BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55840.1 Length=1872 Score E Sequences producing significant alignments: (Bits) Value Ahg486026 jgi|Araly1|486026|fgenesh2_kg.5__2018__AT3G55840.1 2710 0.0 > Ahg486026 jgi|Araly1|486026|fgenesh2_kg.5__2018__AT3G55840.1 Length=1837 Score = 2710 bits (1467), Expect = 0.0 Identities = 1720/1842 (93%), Gaps = 18/1842 (1%) Strand=Plus/Plus Query 44 AAAAAAGATGGCTGATTTGGATTTACAGAGGAAGATGGTATCTCCGAAGCTCCACGTCAC 103 |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1 AAAAAAAATGGCTGATTTGGATTTACAGAGGAATATGGTATCTCCAAAGCTCCACGTCAC 60 Query 104 CATTCCTGAGCCGTGTAAGctctcctccgtctcttctccaatctcctcctcttcttccGC 163 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 TATTCCGGAGCCGTGTAAGCTCTCCTCCGTCTCTTCTCCAATATCCTCCTCTTCTTCCGC 120 Query 164 CGCTTGCTCTGCTTACGAGCTTTACCTCCGTTTGCCTGAACTTAGAAACCTCTGGTCCTC 223 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 121 CGCTTGCTCTGCCTACGAGCTTTACCTCCGTTTGCCGGAACTTAGAAACCTCTGGTTCTC 180 Query 224 TCTCTATTTCCCTCACTGGATCTCCGAGCCCGTTCTCAAACCAGCTCTTCAAGCTCTTGA 283 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 181 TCTCTATTTCCCTCACTGGATCTCCGAGCCGGTTCTCAAACCATCTCTTCAAGCTCTTGA 240 Query 284 GATCACTTTCCGGTTAATCCTCACCGTTGCTTCTGACACACGTCCTTACATCAACCGCCG 343 |||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 241 GATCACTTTCCGATTAATCCTCACCGTTGCTTCTGACAGACGTCCGTACATCAACCGCCG 300 Query 344 CGAATGGATCCGACGGTTGGATTCCCTCACTACCAGCCAGATAAAAATCGTGGCGGCTAT 403 |||||||||||||||||||||||| ||| | || |||||||| ||||||||||||||||| Sbjct 301 CGAATGGATCCGACGGTTGGATTCTCTCTCCACGAGCCAGATCAAAATCGTGGCGGCTAT 360 Query 404 CTGCGGAGATGAAGACAACTACGAAGAGAACGTATCGGCGGCTCCGGTCAGCAATGGCTG 463 ||||| |||||||||| || |||| || |||||||||||||||||||||||||||||||| Sbjct 361 CTGCGAAGATGAAGACTACGACGACGATAACGTATCGGCGGCTCCGGTCAGCAATGGCTG 420 Query 464 GAGCTCGTTGAGTTTGCTTTCGGAGATCGCCACGTGTCGTACATCGGAGAGTGTTGGACA 523 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 421 GAGCTCGTTGAGCTTGCTTTCGGAGATCGCCACGTGTCGTAGATCGGAGAGTGTTGGACA 480 Query 524 GAAGATCTTGTCTACGATCGAGAATGAGATGCGTTGGTGTAAGTATACGCTCGGTTTAGG 583 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GAAGATTTTGTCTACGATCGAGAATGAGATGCGTTGGTGTAAGTATACGCTCGGTTTAGG 540 Query 584 AGAACCAAACCTCGCCGGAAAACCGTATCTTCAATACGACGCCGTTTGTCTCCCGGAGGA 643 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 541 AGAACCAAACCTCGCCGGAAAACCGTATCTTCAATACGACGCCGTTTGTCGCCCGGAGGA 600 Query 644 GCTACATAGCCTCAAGAACAATCCTTACGCAGATCACATCGAGAACCAAGAGAATCAAAT 703 |||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 601 GCTACACAGCCTTAAGAACAATCCTTACTCTGATCACATCGAGAACCAAGAGAATCAAAT 660 Query 704 GCTCTACACTAGTCATCAGATTCTTGAATCGTGGATTTACGTTTCTGTGAATCTTTTATA 763 ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 661 GCTCTACACTATTCATCAGATTCTTGAATCGTGGATTTATGTTTCTGTGAATCTTTTGTA 720 Query 764 TAGAATCGAATCGAGAATCGAAGAGGGAAAATTCGAAAAAGCTTCTTCAGACGTCTACTT 823 | |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 721 TCGAATCGAATCAAGAATCGAAGAGGGAAAATTCGAAAAAGCTTCTTCTGACGTGTACTT 780 Query 824 GTTGGAGAGAATCTGGAAGCTTCTATCAGAGATTGAAGATTTACACATTCTTATGGATCC 883 | | |||||||||||||||||| || | ||||| ||||||||||||||||| |||||||| Sbjct 781 GCTAGAGAGAATCTGGAAGCTTTTAACGGAGATAGAAGATTTACACATTCTGATGGATCC 840 Query 884 TGAAGATTTCTTGAAGGTGAAGAAACAGTTACAAATCAAATCGACGTT-TCCAAACGACG 942 |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 841 TGAAGATTTCTTGAAGGTGAAGAAACAGTTACAAATCAAATCAAC-TTCTCCAAACGACG 899 Query 943 CATTTTGTTTTAGGTCAAAGGG-CTTAGTAGAGATGGCGAAGATGTCCAAAGAGCTGAGA 1001 | |||||||| ||||| ||||| || |||||||||||| |||||||| |||||||||||| Sbjct 900 CGTTTTGTTTCAGGTCCAAGGGGCT-AGTAGAGATGGCCAAGATGTCGAAAGAGCTGAGA 958 Query 1002 CAGAAAGTGCCAGCTGTTCTTGAGGTGGAGGTGGATCCCACCGGAGGTCCGAGGTTGCAA 1061 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 959 CAGAAAGTGCCAGCTGTACTTGAGGTGGAGGTGGATCCCACCGGAGGTCCGAGGTTGCAA 1018 Query 1062 GAGGCGGCGATGAAGCTTTACTCGAGGAAAACAGAGTACGAGAAGATACATTTGCTTCAG 1121 ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1019 GAGGCAGCGATGAAGCTTTACTCAAGGAAGACAGAGTACGAGAAGATACATTTGCTTCAG 1078 Query 1122 GGAATGCAGGCCGTGGAGTCTGCAGCCAAGAGATTCTTCTTCGGATACCAGAAGTTGGTT 1181 ||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||| Sbjct 1079 GGAATGCAGGCAGTCGAGTCGGCAGCGAAGAGATTCTTCTTCGGGTACCAGAAGTTGGTT 1138 Query 1182 GCAGCGATGATTGGGAATGCAGAGGCGAATGCAAATAGAACGGTGGCGAATCACGAGTCC 1241 || || |||||||||||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct 1139 GCGGCCATGATTGGGAATGCGGAGGCGAATGCGAATAGAACCGTGGCGAATCACGAGTCG 1198 Query 1242 TATGATTCACTGACTCAGGTGTTTATGGAGCCACCGTATTACCCGAGCCTAGACGCCGCA 1301 |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1199 TATGATTCTCTGACTCATGTGTTTATGGAGCCACCGTATTACCCGAGCCTAGATGCCGCA 1258 Query 1302 AAGACATTTCTGGGAGAGTTCTGGAGCCAATTGTGATGCAATGGAAGATATTGAC--ACA 1359 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1259 AAGACATTTCTGGGAGAGTTCTGGAGCCAATTGTGATGCAATGGACGATATTGATTGACA 1318 Query 1360 -A-CTACTTAACAAACACTATCAACAGATGTAACACTACTGAAATTTTTGGAAGCATCTA 1417 | | |||||||||||||||||||||||| | |||||||| |||||||||||||||| || Sbjct 1319 CAGCGACTTAACAAACACTATCAACAGATCTTACACTACTTAAATTTTTGGAAGCATGTA 1378 Query 1418 ACGATCAGTGTATGAATATATGTAACTCAtt-ttttttAGCACAAAACAATATTTTCACA 1476 ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| Sbjct 1379 ACGATCAGTGTATGAATATAT--AACTAATTCTTTTTTAGCACAAAACAATATTTTCACA 1436 Query 1477 ACAGCAGATGTTACAAATGGTACAATGAGGGTACAACATACACTAGGCTACTACTATATC 1536 || ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| Sbjct 1437 GCAACAGATGTTACAAAAGGTACAATGAGGGTACATCATGCACTAGGCTACTACTATATC 1496 Query 1537 TCTTTATAAGCTTCTACGAGAAAACCCCATTAGCCACCGATTATAAACTTTTGCTCTCTA 1596 ||||| ||||||||||||||||| |||||| ||||||| |||| ||||||| ||||||| Sbjct 1497 TCTTTGTAAGCTTCTACGAGAAA-CCCCATAAGCCACCAATTACAAACTTTCCCTCTCTA 1555 Query 1597 TCTTC-CTCTTACCGTAAAAGTAAGATCAGTTCTGTTTTT-AAGTCTTACTTGGCGTCAA 1654 ||||| | |||||||||||||||||||||||||| | || || ||||||||||| |||| Sbjct 1556 TCTTCTCGCTTACCGTAAAAGTAAGATCAGTTCTCTGGTTCAACTCTTACTTGGCATCAA 1615 Query 1655 ACCCGTCCATAGCTAGAACGTGAAGAGTAGTA--A-CCAGTGGAAGAGACA-GCGGAAAT 1710 ||| ||| |||||||||||||||||||||||| | ||||||||||||| | |||||||| Sbjct 1616 ACCTGTCAATAGCTAGAACGTGAAGAGTAGTAGTAACCAGTGGAAGAGAAAAGCGGAAAT 1675 Query 1711 GTACTGCCATGCAAAAGCAGCAATCACCAGAACCATAAATTGCGGCTATCCACGGCTTTC 1770 |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1676 GTACCGCCATGTGAAAGCAGCAATCACCAGAACCATAAATTGCGGCTATCCACGGCTTTC 1735 Query 1771 ATGGAAGTGTATACAAGTGGCATTTTCCCAAATTCTGCCACAAACCGGTTTACGCAGTGT 1830 ||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 1736 ATGGAAGAGTATACAAGTGGCATTATCCCAAATTCTGCCACAAACCGATTTACGCAGTGT 1795 Query 1831 GTTCTTTTTTCTGTGTGCCCTCCTATGCTACTAATTCCAGTT 1872 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1796 GTTCTTTTTTCTGTGTGCCCTCCTATGCTACTAATTCCAGTT 1837 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70314592270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5