BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55840.1
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486026 jgi|Araly1|486026|fgenesh2_kg.5__2018__AT3G55840.1 2710 0.0
> Ahg486026 jgi|Araly1|486026|fgenesh2_kg.5__2018__AT3G55840.1
Length=1837
Score = 2710 bits (1467), Expect = 0.0
Identities = 1720/1842 (93%), Gaps = 18/1842 (1%)
Strand=Plus/Plus
Query 44 AAAAAAGATGGCTGATTTGGATTTACAGAGGAAGATGGTATCTCCGAAGCTCCACGTCAC 103
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1 AAAAAAAATGGCTGATTTGGATTTACAGAGGAATATGGTATCTCCAAAGCTCCACGTCAC 60
Query 104 CATTCCTGAGCCGTGTAAGctctcctccgtctcttctccaatctcctcctcttcttccGC 163
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TATTCCGGAGCCGTGTAAGCTCTCCTCCGTCTCTTCTCCAATATCCTCCTCTTCTTCCGC 120
Query 164 CGCTTGCTCTGCTTACGAGCTTTACCTCCGTTTGCCTGAACTTAGAAACCTCTGGTCCTC 223
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 121 CGCTTGCTCTGCCTACGAGCTTTACCTCCGTTTGCCGGAACTTAGAAACCTCTGGTTCTC 180
Query 224 TCTCTATTTCCCTCACTGGATCTCCGAGCCCGTTCTCAAACCAGCTCTTCAAGCTCTTGA 283
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 181 TCTCTATTTCCCTCACTGGATCTCCGAGCCGGTTCTCAAACCATCTCTTCAAGCTCTTGA 240
Query 284 GATCACTTTCCGGTTAATCCTCACCGTTGCTTCTGACACACGTCCTTACATCAACCGCCG 343
|||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 241 GATCACTTTCCGATTAATCCTCACCGTTGCTTCTGACAGACGTCCGTACATCAACCGCCG 300
Query 344 CGAATGGATCCGACGGTTGGATTCCCTCACTACCAGCCAGATAAAAATCGTGGCGGCTAT 403
|||||||||||||||||||||||| ||| | || |||||||| |||||||||||||||||
Sbjct 301 CGAATGGATCCGACGGTTGGATTCTCTCTCCACGAGCCAGATCAAAATCGTGGCGGCTAT 360
Query 404 CTGCGGAGATGAAGACAACTACGAAGAGAACGTATCGGCGGCTCCGGTCAGCAATGGCTG 463
||||| |||||||||| || |||| || ||||||||||||||||||||||||||||||||
Sbjct 361 CTGCGAAGATGAAGACTACGACGACGATAACGTATCGGCGGCTCCGGTCAGCAATGGCTG 420
Query 464 GAGCTCGTTGAGTTTGCTTTCGGAGATCGCCACGTGTCGTACATCGGAGAGTGTTGGACA 523
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 GAGCTCGTTGAGCTTGCTTTCGGAGATCGCCACGTGTCGTAGATCGGAGAGTGTTGGACA 480
Query 524 GAAGATCTTGTCTACGATCGAGAATGAGATGCGTTGGTGTAAGTATACGCTCGGTTTAGG 583
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAGATTTTGTCTACGATCGAGAATGAGATGCGTTGGTGTAAGTATACGCTCGGTTTAGG 540
Query 584 AGAACCAAACCTCGCCGGAAAACCGTATCTTCAATACGACGCCGTTTGTCTCCCGGAGGA 643
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 AGAACCAAACCTCGCCGGAAAACCGTATCTTCAATACGACGCCGTTTGTCGCCCGGAGGA 600
Query 644 GCTACATAGCCTCAAGAACAATCCTTACGCAGATCACATCGAGAACCAAGAGAATCAAAT 703
|||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 601 GCTACACAGCCTTAAGAACAATCCTTACTCTGATCACATCGAGAACCAAGAGAATCAAAT 660
Query 704 GCTCTACACTAGTCATCAGATTCTTGAATCGTGGATTTACGTTTCTGTGAATCTTTTATA 763
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 661 GCTCTACACTATTCATCAGATTCTTGAATCGTGGATTTATGTTTCTGTGAATCTTTTGTA 720
Query 764 TAGAATCGAATCGAGAATCGAAGAGGGAAAATTCGAAAAAGCTTCTTCAGACGTCTACTT 823
| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 721 TCGAATCGAATCAAGAATCGAAGAGGGAAAATTCGAAAAAGCTTCTTCTGACGTGTACTT 780
Query 824 GTTGGAGAGAATCTGGAAGCTTCTATCAGAGATTGAAGATTTACACATTCTTATGGATCC 883
| | |||||||||||||||||| || | ||||| ||||||||||||||||| ||||||||
Sbjct 781 GCTAGAGAGAATCTGGAAGCTTTTAACGGAGATAGAAGATTTACACATTCTGATGGATCC 840
Query 884 TGAAGATTTCTTGAAGGTGAAGAAACAGTTACAAATCAAATCGACGTT-TCCAAACGACG 942
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 841 TGAAGATTTCTTGAAGGTGAAGAAACAGTTACAAATCAAATCAAC-TTCTCCAAACGACG 899
Query 943 CATTTTGTTTTAGGTCAAAGGG-CTTAGTAGAGATGGCGAAGATGTCCAAAGAGCTGAGA 1001
| |||||||| ||||| ||||| || |||||||||||| |||||||| ||||||||||||
Sbjct 900 CGTTTTGTTTCAGGTCCAAGGGGCT-AGTAGAGATGGCCAAGATGTCGAAAGAGCTGAGA 958
Query 1002 CAGAAAGTGCCAGCTGTTCTTGAGGTGGAGGTGGATCCCACCGGAGGTCCGAGGTTGCAA 1061
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CAGAAAGTGCCAGCTGTACTTGAGGTGGAGGTGGATCCCACCGGAGGTCCGAGGTTGCAA 1018
Query 1062 GAGGCGGCGATGAAGCTTTACTCGAGGAAAACAGAGTACGAGAAGATACATTTGCTTCAG 1121
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1019 GAGGCAGCGATGAAGCTTTACTCAAGGAAGACAGAGTACGAGAAGATACATTTGCTTCAG 1078
Query 1122 GGAATGCAGGCCGTGGAGTCTGCAGCCAAGAGATTCTTCTTCGGATACCAGAAGTTGGTT 1181
||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1079 GGAATGCAGGCAGTCGAGTCGGCAGCGAAGAGATTCTTCTTCGGGTACCAGAAGTTGGTT 1138
Query 1182 GCAGCGATGATTGGGAATGCAGAGGCGAATGCAAATAGAACGGTGGCGAATCACGAGTCC 1241
|| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 1139 GCGGCCATGATTGGGAATGCGGAGGCGAATGCGAATAGAACCGTGGCGAATCACGAGTCG 1198
Query 1242 TATGATTCACTGACTCAGGTGTTTATGGAGCCACCGTATTACCCGAGCCTAGACGCCGCA 1301
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1199 TATGATTCTCTGACTCATGTGTTTATGGAGCCACCGTATTACCCGAGCCTAGATGCCGCA 1258
Query 1302 AAGACATTTCTGGGAGAGTTCTGGAGCCAATTGTGATGCAATGGAAGATATTGAC--ACA 1359
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1259 AAGACATTTCTGGGAGAGTTCTGGAGCCAATTGTGATGCAATGGACGATATTGATTGACA 1318
Query 1360 -A-CTACTTAACAAACACTATCAACAGATGTAACACTACTGAAATTTTTGGAAGCATCTA 1417
| | |||||||||||||||||||||||| | |||||||| |||||||||||||||| ||
Sbjct 1319 CAGCGACTTAACAAACACTATCAACAGATCTTACACTACTTAAATTTTTGGAAGCATGTA 1378
Query 1418 ACGATCAGTGTATGAATATATGTAACTCAtt-ttttttAGCACAAAACAATATTTTCACA 1476
||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 1379 ACGATCAGTGTATGAATATAT--AACTAATTCTTTTTTAGCACAAAACAATATTTTCACA 1436
Query 1477 ACAGCAGATGTTACAAATGGTACAATGAGGGTACAACATACACTAGGCTACTACTATATC 1536
|| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1437 GCAACAGATGTTACAAAAGGTACAATGAGGGTACATCATGCACTAGGCTACTACTATATC 1496
Query 1537 TCTTTATAAGCTTCTACGAGAAAACCCCATTAGCCACCGATTATAAACTTTTGCTCTCTA 1596
||||| ||||||||||||||||| |||||| ||||||| |||| ||||||| |||||||
Sbjct 1497 TCTTTGTAAGCTTCTACGAGAAA-CCCCATAAGCCACCAATTACAAACTTTCCCTCTCTA 1555
Query 1597 TCTTC-CTCTTACCGTAAAAGTAAGATCAGTTCTGTTTTT-AAGTCTTACTTGGCGTCAA 1654
||||| | |||||||||||||||||||||||||| | || || ||||||||||| ||||
Sbjct 1556 TCTTCTCGCTTACCGTAAAAGTAAGATCAGTTCTCTGGTTCAACTCTTACTTGGCATCAA 1615
Query 1655 ACCCGTCCATAGCTAGAACGTGAAGAGTAGTA--A-CCAGTGGAAGAGACA-GCGGAAAT 1710
||| ||| |||||||||||||||||||||||| | ||||||||||||| | ||||||||
Sbjct 1616 ACCTGTCAATAGCTAGAACGTGAAGAGTAGTAGTAACCAGTGGAAGAGAAAAGCGGAAAT 1675
Query 1711 GTACTGCCATGCAAAAGCAGCAATCACCAGAACCATAAATTGCGGCTATCCACGGCTTTC 1770
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 GTACCGCCATGTGAAAGCAGCAATCACCAGAACCATAAATTGCGGCTATCCACGGCTTTC 1735
Query 1771 ATGGAAGTGTATACAAGTGGCATTTTCCCAAATTCTGCCACAAACCGGTTTACGCAGTGT 1830
||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1736 ATGGAAGAGTATACAAGTGGCATTATCCCAAATTCTGCCACAAACCGATTTACGCAGTGT 1795
Query 1831 GTTCTTTTTTCTGTGTGCCCTCCTATGCTACTAATTCCAGTT 1872
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 GTTCTTTTTTCTGTGTGCCCTCCTATGCTACTAATTCCAGTT 1837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70314592270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5