BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55850.2 Length=2183 Score E Sequences producing significant alignments: (Bits) Value Ahg486028 jgi|Araly1|486028|fgenesh2_kg.5__2020__AT3G55850.2 2955 0.0 > Ahg486028 jgi|Araly1|486028|fgenesh2_kg.5__2020__AT3G55850.2 Length=2075 Score = 2955 bits (1600), Expect = 0.0 Identities = 1764/1843 (96%), Gaps = 11/1843 (1%) Strand=Plus/Plus Query 325 GTTTCAGCTGCCGTGTTCCTCCTTATCTCCGTCGCGTATCTTCCTTTGCTCAACGACTTA 384 ||||| || ||||| || |||||||||||||||||||||||||||| ||||||||||||| Sbjct 235 GTTTCCGCCGCCGTCTTTCTCCTTATCTCCGTCGCGTATCTTCCTTCGCTCAACGACTTA 294 Query 385 TATTGGTCAACTCTCAAGTCTCTTACACCACCGGCTGGTATCGTGGCGGATTTGTTAGTG 444 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 295 TATTGGTCAACTCTCAAGTCTCTCACACCACCGGTTGGTATCGTGGCGGATTTGTTAGTG 354 Query 445 ACCAATGGAACAATCTTCACCAGCGATAGCTCTTTGCCTTTTGCCGATTCCATGGCGATT 504 | |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| Sbjct 355 AGGAATGGAACAATCTTCACCAGTGATAGCTCTTTGCCATTTGCAGATTCCATGGCGATT 414 Query 505 CGTAATGGCAGGATTCTTAAAGTTGGAAGCTTTGCCACTCTCAAGGGTTTTATAGGAGAT 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 CGTAATGGCAGGATTCTTAAAGTTGGAAGCTTTGCCACTCTCAAGGGTTTTATAGGAGAT 474 Query 565 GGAACTATGGAGGTGAATCTGGAGGGGAAGATTGTAGTGCCTGGACTTATTGATTCACAT 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 GGAACTATGGAGGTGAATCTGGAGGGGAAGATTGTAGTGCCTGGACTTATTGATTCACAT 534 Query 625 GTTCATCTGATTTCTGGGGGATTACAGATGGCCCAAGTTGGACTTCGTGGAGTGAGTCAA 684 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 GTTCATTTGATATCTGGGGGATTACAGATGGCCCAAGTTGGACTTCGTGGAGTGAGTCAA 594 Query 685 AAAGATGAGTTTTGTAAAATGGTGAAGGACGCTGTGCAGAATGCAAAAGAAGGCTCATGG 744 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 595 AAAGATGAGTTTTGTAAAATGGTGAAGGACGCAGTGCAGAATGCAAAAGAAGGCTCATGG 654 Query 745 ATTTTGGGTGGTGGCTGGAACAATGATTTCTGGGGAGGAGAATTGCCCTCTGCATCATGG 804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 ATTTTGGGTGGTGGCTGGAACAATGATTTCTGGGGAGGAGAATTGCCCTCTGCATCATGG 714 Query 805 ATTGATGAAATCTCCCCTCGTAATCCTGTTTGGTTGATTAGGATGGATGGTCATATGGCA 864 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 715 ATTGATGAAATCTCCCCTCATAATCCTGTTTGGTTGATTAGGATGGATGGTCATATGGCA 774 Query 865 TTGGCAAATTCCCTTGCGCTCAAGATTGCTGGTGTTATAAGTTTAACGGAAGATCCAGTT 924 |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| Sbjct 775 TTGGCAAATTCCCTTGCGCTTAGGATTGCTGGTGTTACAAGTTTAACGGAAGATCCAGTT 834 Query 925 GGTGGAACGATAATGAGGATGCCTAGTGGCGAGCCGACAGGACTTTTGATCGATGCTGCT 984 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 835 GGTGGAACGATAATGAGGATGCCTAGTGGCGAGCCGACAGGTCTTTTGATCGATGCTGCT 894 Query 985 ATGGAGCTTGTCACCCCCTGGGTTAAAGAAATCTCAGTGGATGAACGTAGGGAAGCACTA 1044 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 ATGGAGCTTGTCACTCCCTGGGTTAAAGAAATCTCAGTGGATGAACGTAGGGAAGCACTA 954 Query 1045 TTTAGAGCTAGCAAATATGCTTTGACTAGAGGCGTGACAACTGTTATTGATCTTGGAAGA 1104 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 955 TTTAGAGCTAGCAAATATGCTTTAACTAGAGGCGTGACAACTGTTATTGATCTTGGAAGA 1014 Query 1105 TACTTTCCTGGCACCACAGATGAGCTCTCCTGGAAAGACTTTCAAGATGTCTATCTATAT 1164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 TACTTTCCTGGCACCACAGATGAGCTCTCCTGGAAAGACTTTCAAGATGTCTATCTATAT 1074 Query 1165 GCTGATTCCTCGAAGAAGATGATGATACGGACTTGCTTGTTTTTTCCCATCACAACGTGG 1224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1075 GCTGATTCCTCGAAGAAGATGATGATACGGACTTGCTTGTTTTTTCCCATCACAACATGG 1134 Query 1225 TCACGTTTATTGGATCTTAAGCTGCAGAAGGGATCTGTACTGAGTGAATGGTTATATCTC 1284 |||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1135 TCACGTTTATCGGATCTTAAGCTTCAGAAGGGATCTGTACTGAGTGAATGGTTGTATCTC 1194 Query 1285 GGTGGCGTCAAAGCATTTATTGATGGCTCTCTAGGTTCCAACAGTGCACTTTTTTACGAG 1344 |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1195 GGTGGCGTGAAAGCATTTATTGATGGCTCTCTAGGTTCCAGCAGTGCACTTTTTTACGAG 1254 Query 1345 GAATATATTGATACACCTAATAATTATGGGTTAGAAGTGATGGATCCTGAAAAACTTTCC 1404 |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1255 GAATATATTGATTCACCTGATAATTATGGGTTAGAAGTGATGGATCCTGAGAAACTTTCC 1314 Query 1405 AACTTCACAATGGCAGCAGACAAATCAGGGCTTCAGGTTGCTATCCATGCTATAGGCGAC 1464 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1315 AACTTCACAATGGCAGCAGACAAATCAGGGCTTCAGGTTGCTATACATGCTATAGGCGAC 1374 Query 1465 AAAGCAAATGACATGATCCTTGACATGTACGAATCCGTTGCTGCAGCCAATGGAGACCGA 1524 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1375 AAAGCAAATGACATGATCCTTGACATGTACGAATCTGTTGCTGCAGCCAATGGAGACCGG 1434 Query 1525 GATAGAAGATTTAGGATAGAGCATGCCCAACATTTGGCACCAGGATCAGCCAACCGGTTC 1584 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 GATAGAAGATTTAGGATAGAGCATGCCCAACATTTGGCACCAGGATCAGCCAACCGGTTT 1494 Query 1585 GGTCAACTTCACATTGTTGCTTCAGTTCAGCCAGACCATTTGCTTGATGATGCTGATTCT 1644 ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1495 GGTCAACTTCATATTGTAGCTTCAGTTCAGCCAGATCATTTGCTTGATGATGCTGATTCT 1554 Query 1645 GTTGCTAAGAAGCTCGGTTCTGAAAGAGCCGTAAAGGAGTCTTATCTATTCCAATCTCTC 1704 ||||||| |||| |||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 1555 GTTGCTAGGAAGATCGGTTCTGAGAGAGCCGAAAAGGAGTCTTATCTATTCCAATCTCTC 1614 Query 1705 TTAAATGGCAATGCACTCTTGGCACTTGGCTCAGACTGGCCTGTAGCAGACATTAACCCG 1764 ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1615 TTAAACGGCAATGCACTCTTGGCACTTGGTTCAGACTGGCCTGTTGCAGACATTAACCCG 1674 Query 1765 TTGCACAGTATCAGAACCGCGGTTAAAAGAATACCTCCCAAGTGGGATCACGCTTGGATT 1824 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1675 TTGCATAGTATCAGAACCGCGGTTAAACGAATACCTCCCAAGTGGGATCACGCTTGGATT 1734 Query 1825 CCATCTGAACGCATCTCTTTTACGGATGCGCTGATTGCGCAGACGATATCAGCGGCAAGA 1884 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 1735 CCATCTGAACGCATCTCTTTTACCGATGCGCTGATTGCGCAGACGATATCAGCGGCACGA 1794 Query 1885 GCAGCGTTTTTGGATCATCACTTGGGGTCTTTATCTCCAGGAAAACTAGCAGATTTTGTC 1944 | ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1795 GGAGCGTTTCTGGATCATCACTTGGGGTCTTTATCTCCAGGAAAACTCGCAGATTTTGTC 1854 Query 1945 ATATTGTCAACAAATTCTTGGGATGAGTTCTCAAAAGACGTTTCTGCATCAGTGTTAGCA 2004 ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| Sbjct 1855 ATACTGTCAACAAATTCTTGGGATGAGTTCTCAAAAGACGTTTCTGCTTCAGTTTTGGCA 1914 Query 2005 ACGTATGTAGGAGGAAAGCAATTGTATCCATGAATCATGATGATGCAGTCTT-TATCTAA 2063 || ||||||||||||||||||||||||||||||||||| |||||| | | ||| ||| Sbjct 1915 ACCTATGTAGGAGGAAAGCAATTGTATCCATGAATCAT-ATGATGGAATGGAGTATTTAA 1973 Query 2064 TTAAGAAACAAACTTTACACACTTAGAGT-ATCTGATCATTTATCTGTTTGTCTAGGCGT 2122 ||||||||||||||||| ||||| ||| | ||||||| |||||| |||||||||| |||| Sbjct 1974 TTAAGAAACAAACTTTATACACT-AGAATTATCTGATTATTTATTTGTTTGTCTATGCGT 2032 Query 2123 TATCA---AT----GTACATATGTATGACATCTGGCTTATCAA 2158 ||||| || ||||||||||||||||||||||||||||| Sbjct 2033 TATCACTTATCAATGTACATATGTATGACATCTGGCTTATCAA 2075 Score = 211 bits (114), Expect = 2e-53 Identities = 128/135 (95%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1 TGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTC 60 Query 61 CACGCTAAGTGGCATACGCCTATTTTTGGAGGGATCTCACTTCACAGTGGGACCCAACAT 120 |||||||||||||||||||||||||||||||||||||||| | || ||| |||||||||| Sbjct 61 CACGCTAAGTGGCATACGCCTATTTTTGGAGGGATCTCACCTAACCGTGAGACCCAACAT 120 Query 121 TTACACTAGTCTGAA 135 | | |||||||||| Sbjct 121 CTGCCCTAGTCTGAA 135 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82160658465 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5