BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55850.2
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486028 jgi|Araly1|486028|fgenesh2_kg.5__2020__AT3G55850.2 2955 0.0
> Ahg486028 jgi|Araly1|486028|fgenesh2_kg.5__2020__AT3G55850.2
Length=2075
Score = 2955 bits (1600), Expect = 0.0
Identities = 1764/1843 (96%), Gaps = 11/1843 (1%)
Strand=Plus/Plus
Query 325 GTTTCAGCTGCCGTGTTCCTCCTTATCTCCGTCGCGTATCTTCCTTTGCTCAACGACTTA 384
||||| || ||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 235 GTTTCCGCCGCCGTCTTTCTCCTTATCTCCGTCGCGTATCTTCCTTCGCTCAACGACTTA 294
Query 385 TATTGGTCAACTCTCAAGTCTCTTACACCACCGGCTGGTATCGTGGCGGATTTGTTAGTG 444
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 295 TATTGGTCAACTCTCAAGTCTCTCACACCACCGGTTGGTATCGTGGCGGATTTGTTAGTG 354
Query 445 ACCAATGGAACAATCTTCACCAGCGATAGCTCTTTGCCTTTTGCCGATTCCATGGCGATT 504
| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 355 AGGAATGGAACAATCTTCACCAGTGATAGCTCTTTGCCATTTGCAGATTCCATGGCGATT 414
Query 505 CGTAATGGCAGGATTCTTAAAGTTGGAAGCTTTGCCACTCTCAAGGGTTTTATAGGAGAT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CGTAATGGCAGGATTCTTAAAGTTGGAAGCTTTGCCACTCTCAAGGGTTTTATAGGAGAT 474
Query 565 GGAACTATGGAGGTGAATCTGGAGGGGAAGATTGTAGTGCCTGGACTTATTGATTCACAT 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GGAACTATGGAGGTGAATCTGGAGGGGAAGATTGTAGTGCCTGGACTTATTGATTCACAT 534
Query 625 GTTCATCTGATTTCTGGGGGATTACAGATGGCCCAAGTTGGACTTCGTGGAGTGAGTCAA 684
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GTTCATTTGATATCTGGGGGATTACAGATGGCCCAAGTTGGACTTCGTGGAGTGAGTCAA 594
Query 685 AAAGATGAGTTTTGTAAAATGGTGAAGGACGCTGTGCAGAATGCAAAAGAAGGCTCATGG 744
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 595 AAAGATGAGTTTTGTAAAATGGTGAAGGACGCAGTGCAGAATGCAAAAGAAGGCTCATGG 654
Query 745 ATTTTGGGTGGTGGCTGGAACAATGATTTCTGGGGAGGAGAATTGCCCTCTGCATCATGG 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ATTTTGGGTGGTGGCTGGAACAATGATTTCTGGGGAGGAGAATTGCCCTCTGCATCATGG 714
Query 805 ATTGATGAAATCTCCCCTCGTAATCCTGTTTGGTTGATTAGGATGGATGGTCATATGGCA 864
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATTGATGAAATCTCCCCTCATAATCCTGTTTGGTTGATTAGGATGGATGGTCATATGGCA 774
Query 865 TTGGCAAATTCCCTTGCGCTCAAGATTGCTGGTGTTATAAGTTTAACGGAAGATCCAGTT 924
|||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 775 TTGGCAAATTCCCTTGCGCTTAGGATTGCTGGTGTTACAAGTTTAACGGAAGATCCAGTT 834
Query 925 GGTGGAACGATAATGAGGATGCCTAGTGGCGAGCCGACAGGACTTTTGATCGATGCTGCT 984
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 835 GGTGGAACGATAATGAGGATGCCTAGTGGCGAGCCGACAGGTCTTTTGATCGATGCTGCT 894
Query 985 ATGGAGCTTGTCACCCCCTGGGTTAAAGAAATCTCAGTGGATGAACGTAGGGAAGCACTA 1044
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ATGGAGCTTGTCACTCCCTGGGTTAAAGAAATCTCAGTGGATGAACGTAGGGAAGCACTA 954
Query 1045 TTTAGAGCTAGCAAATATGCTTTGACTAGAGGCGTGACAACTGTTATTGATCTTGGAAGA 1104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 955 TTTAGAGCTAGCAAATATGCTTTAACTAGAGGCGTGACAACTGTTATTGATCTTGGAAGA 1014
Query 1105 TACTTTCCTGGCACCACAGATGAGCTCTCCTGGAAAGACTTTCAAGATGTCTATCTATAT 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TACTTTCCTGGCACCACAGATGAGCTCTCCTGGAAAGACTTTCAAGATGTCTATCTATAT 1074
Query 1165 GCTGATTCCTCGAAGAAGATGATGATACGGACTTGCTTGTTTTTTCCCATCACAACGTGG 1224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1075 GCTGATTCCTCGAAGAAGATGATGATACGGACTTGCTTGTTTTTTCCCATCACAACATGG 1134
Query 1225 TCACGTTTATTGGATCTTAAGCTGCAGAAGGGATCTGTACTGAGTGAATGGTTATATCTC 1284
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1135 TCACGTTTATCGGATCTTAAGCTTCAGAAGGGATCTGTACTGAGTGAATGGTTGTATCTC 1194
Query 1285 GGTGGCGTCAAAGCATTTATTGATGGCTCTCTAGGTTCCAACAGTGCACTTTTTTACGAG 1344
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1195 GGTGGCGTGAAAGCATTTATTGATGGCTCTCTAGGTTCCAGCAGTGCACTTTTTTACGAG 1254
Query 1345 GAATATATTGATACACCTAATAATTATGGGTTAGAAGTGATGGATCCTGAAAAACTTTCC 1404
|||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1255 GAATATATTGATTCACCTGATAATTATGGGTTAGAAGTGATGGATCCTGAGAAACTTTCC 1314
Query 1405 AACTTCACAATGGCAGCAGACAAATCAGGGCTTCAGGTTGCTATCCATGCTATAGGCGAC 1464
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1315 AACTTCACAATGGCAGCAGACAAATCAGGGCTTCAGGTTGCTATACATGCTATAGGCGAC 1374
Query 1465 AAAGCAAATGACATGATCCTTGACATGTACGAATCCGTTGCTGCAGCCAATGGAGACCGA 1524
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1375 AAAGCAAATGACATGATCCTTGACATGTACGAATCTGTTGCTGCAGCCAATGGAGACCGG 1434
Query 1525 GATAGAAGATTTAGGATAGAGCATGCCCAACATTTGGCACCAGGATCAGCCAACCGGTTC 1584
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GATAGAAGATTTAGGATAGAGCATGCCCAACATTTGGCACCAGGATCAGCCAACCGGTTT 1494
Query 1585 GGTCAACTTCACATTGTTGCTTCAGTTCAGCCAGACCATTTGCTTGATGATGCTGATTCT 1644
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1495 GGTCAACTTCATATTGTAGCTTCAGTTCAGCCAGATCATTTGCTTGATGATGCTGATTCT 1554
Query 1645 GTTGCTAAGAAGCTCGGTTCTGAAAGAGCCGTAAAGGAGTCTTATCTATTCCAATCTCTC 1704
||||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1555 GTTGCTAGGAAGATCGGTTCTGAGAGAGCCGAAAAGGAGTCTTATCTATTCCAATCTCTC 1614
Query 1705 TTAAATGGCAATGCACTCTTGGCACTTGGCTCAGACTGGCCTGTAGCAGACATTAACCCG 1764
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1615 TTAAACGGCAATGCACTCTTGGCACTTGGTTCAGACTGGCCTGTTGCAGACATTAACCCG 1674
Query 1765 TTGCACAGTATCAGAACCGCGGTTAAAAGAATACCTCCCAAGTGGGATCACGCTTGGATT 1824
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1675 TTGCATAGTATCAGAACCGCGGTTAAACGAATACCTCCCAAGTGGGATCACGCTTGGATT 1734
Query 1825 CCATCTGAACGCATCTCTTTTACGGATGCGCTGATTGCGCAGACGATATCAGCGGCAAGA 1884
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1735 CCATCTGAACGCATCTCTTTTACCGATGCGCTGATTGCGCAGACGATATCAGCGGCACGA 1794
Query 1885 GCAGCGTTTTTGGATCATCACTTGGGGTCTTTATCTCCAGGAAAACTAGCAGATTTTGTC 1944
| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1795 GGAGCGTTTCTGGATCATCACTTGGGGTCTTTATCTCCAGGAAAACTCGCAGATTTTGTC 1854
Query 1945 ATATTGTCAACAAATTCTTGGGATGAGTTCTCAAAAGACGTTTCTGCATCAGTGTTAGCA 2004
||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1855 ATACTGTCAACAAATTCTTGGGATGAGTTCTCAAAAGACGTTTCTGCTTCAGTTTTGGCA 1914
Query 2005 ACGTATGTAGGAGGAAAGCAATTGTATCCATGAATCATGATGATGCAGTCTT-TATCTAA 2063
|| ||||||||||||||||||||||||||||||||||| |||||| | | ||| |||
Sbjct 1915 ACCTATGTAGGAGGAAAGCAATTGTATCCATGAATCAT-ATGATGGAATGGAGTATTTAA 1973
Query 2064 TTAAGAAACAAACTTTACACACTTAGAGT-ATCTGATCATTTATCTGTTTGTCTAGGCGT 2122
||||||||||||||||| ||||| ||| | ||||||| |||||| |||||||||| ||||
Sbjct 1974 TTAAGAAACAAACTTTATACACT-AGAATTATCTGATTATTTATTTGTTTGTCTATGCGT 2032
Query 2123 TATCA---AT----GTACATATGTATGACATCTGGCTTATCAA 2158
||||| || |||||||||||||||||||||||||||||
Sbjct 2033 TATCACTTATCAATGTACATATGTATGACATCTGGCTTATCAA 2075
Score = 211 bits (114), Expect = 2e-53
Identities = 128/135 (95%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 1 TGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTC 60
Query 61 CACGCTAAGTGGCATACGCCTATTTTTGGAGGGATCTCACTTCACAGTGGGACCCAACAT 120
|||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||
Sbjct 61 CACGCTAAGTGGCATACGCCTATTTTTGGAGGGATCTCACCTAACCGTGAGACCCAACAT 120
Query 121 TTACACTAGTCTGAA 135
| | ||||||||||
Sbjct 121 CTGCCCTAGTCTGAA 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82160658465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5