BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55860.1 Length=1366 Score E Sequences producing significant alignments: (Bits) Value Ahg324085 jgi|Araly1|324085|fgenesh1_pm.C_scaffold_5001629 233 2e-60 Ahg486028 jgi|Araly1|486028|fgenesh2_kg.5__2020__AT3G55850.2 182 8e-45 Ahg348672 jgi|Araly1|348672|fgenesh1_pg.C_scaffold_5002064 93.5 4e-18 > Ahg324085 jgi|Araly1|324085|fgenesh1_pm.C_scaffold_5001629 Length=408 Score = 233 bits (126), Expect = 2e-60 Identities = 166/185 (90%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 930 ATGACCGTATCTGAGATTGAGACTCTACAACGAATAATTTCTCCTT-TTGCTGAGTTTTA 988 |||||| ||||||||||||||||||||||| || |||||| ||| || ||||| |||| Sbjct 223 ATGACCATATCTGAGATTGAGACTCTACAAAGACCAATTTC-GCTTCTTACTGAGGTTTA 281 Query 989 CACGAACATGGCAAGGGA-GTTGCATCCAGAGTTGTTTTCAGATGATTCAAATACATGGC 1047 |||||||||||||| || |||||||||||||||||||||||| ||| ||||| || ||| Sbjct 282 CACGAACATGGCAA-TGAGGTTGCATCCAGAGTTGTTTTCAGAAGATACAAATCCAAGGC 340 Query 1048 GGTGGTTGTTGTCCCAAGCCCAACCGAGGAAATACAACAGAACAACCAACTTCAAAATGA 1107 ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| Sbjct 341 GGTGGTTGTTGTCCCAAGCCCAACCGAGGAAATGCAACAGAATAACCAAATTCAAAATGA 400 Query 1108 ACCGG 1112 ||||| Sbjct 401 ACCGG 405 > Ahg486028 jgi|Araly1|486028|fgenesh2_kg.5__2020__AT3G55850.2 Length=2075 Score = 182 bits (98), Expect = 8e-45 Identities = 110/116 (95%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1 GTGGTGAGCACAAAGCGAACTACTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTCC 60 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2 GTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTCC 61 Query 61 ACGCCAAGTGGCATACGCCTATTTTTGGAGGGCTCTCACGTAAATGTGAGACCCAA 116 |||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||| Sbjct 62 ACGCTAAGTGGCATACGCCTATTTTTGGAGGGATCTCACCTAACCGTGAGACCCAA 117 > Ahg348672 jgi|Araly1|348672|fgenesh1_pg.C_scaffold_5002064 Length=447 Score = 93.5 bits (50), Expect = 4e-18 Identities = 63/69 (91%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 1044 TGGCGGTGGTTGTTGT-CCCAAGCCCAACCGAGGAAATACAACAGAACAACCAACTTCAA 1102 ||||||||||| | | |||||||||||||||||| |||| ||||||||||||||||||| Sbjct 359 TGGCGGTGGTT-CTCTCCCCAAGCCCAACCGAGGAGATACTACAGAACAACCAACTTCAA 417 Query 1103 AATGAACCG 1111 ||||||||| Sbjct 418 AATGAACCG 426 Score = 89.8 bits (48), Expect = 5e-17 Identities = 57/61 (93%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 986 TTACACGAACATGGCAAGGGA-GTTGCATCCAGAGTTGTTTTCAGATGATTCAAATACAT 1044 |||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||| Sbjct 258 TTACACTAACATGGCAA-GGACGTTGCATCCAGAGTTGTTTTCAGATGATACAAATACAT 316 Query 1045 G 1045 | Sbjct 317 G 317 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51122831697 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5