BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G55860.1

Length=1366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg324085 jgi|Araly1|324085|fgenesh1_pm.C_scaffold_5001629           233    2e-60
  Ahg486028 jgi|Araly1|486028|fgenesh2_kg.5__2020__AT3G55850.2         182    8e-45
  Ahg348672 jgi|Araly1|348672|fgenesh1_pg.C_scaffold_5002064          93.5    4e-18


> Ahg324085 jgi|Araly1|324085|fgenesh1_pm.C_scaffold_5001629
Length=408

 Score =  233 bits (126),  Expect = 2e-60
 Identities = 166/185 (90%), Gaps = 4/185 (2%)
 Strand=Plus/Plus

Query  930   ATGACCGTATCTGAGATTGAGACTCTACAACGAATAATTTCTCCTT-TTGCTGAGTTTTA  988
             |||||| ||||||||||||||||||||||| ||  ||||||  ||| || ||||| ||||
Sbjct  223   ATGACCATATCTGAGATTGAGACTCTACAAAGACCAATTTC-GCTTCTTACTGAGGTTTA  281

Query  989   CACGAACATGGCAAGGGA-GTTGCATCCAGAGTTGTTTTCAGATGATTCAAATACATGGC  1047
             ||||||||||||||  || |||||||||||||||||||||||| ||| ||||| || |||
Sbjct  282   CACGAACATGGCAA-TGAGGTTGCATCCAGAGTTGTTTTCAGAAGATACAAATCCAAGGC  340

Query  1048  GGTGGTTGTTGTCCCAAGCCCAACCGAGGAAATACAACAGAACAACCAACTTCAAAATGA  1107
             ||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct  341   GGTGGTTGTTGTCCCAAGCCCAACCGAGGAAATGCAACAGAATAACCAAATTCAAAATGA  400

Query  1108  ACCGG  1112
             |||||
Sbjct  401   ACCGG  405


> Ahg486028 jgi|Araly1|486028|fgenesh2_kg.5__2020__AT3G55850.2
Length=2075

 Score =  182 bits (98),  Expect = 8e-45
 Identities = 110/116 (95%), Gaps = 0/116 (0%)
 Strand=Plus/Plus

Query  1    GTGGTGAGCACAAAGCGAACTACTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTCC  60
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  2    GTGGTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCTCC  61

Query  61   ACGCCAAGTGGCATACGCCTATTTTTGGAGGGCTCTCACGTAAATGTGAGACCCAA  116
            |||| ||||||||||||||||||||||||||| |||||| |||  |||||||||||
Sbjct  62   ACGCTAAGTGGCATACGCCTATTTTTGGAGGGATCTCACCTAACCGTGAGACCCAA  117


> Ahg348672 jgi|Araly1|348672|fgenesh1_pg.C_scaffold_5002064
Length=447

 Score = 93.5 bits (50),  Expect = 4e-18
 Identities = 63/69 (91%), Gaps = 2/69 (3%)
 Strand=Plus/Plus

Query  1044  TGGCGGTGGTTGTTGT-CCCAAGCCCAACCGAGGAAATACAACAGAACAACCAACTTCAA  1102
             |||||||||||  | | |||||||||||||||||| |||| |||||||||||||||||||
Sbjct  359   TGGCGGTGGTT-CTCTCCCCAAGCCCAACCGAGGAGATACTACAGAACAACCAACTTCAA  417

Query  1103  AATGAACCG  1111
             |||||||||
Sbjct  418   AATGAACCG  426


 Score = 89.8 bits (48),  Expect = 5e-17
 Identities = 57/61 (93%), Gaps = 2/61 (3%)
 Strand=Plus/Plus

Query  986   TTACACGAACATGGCAAGGGA-GTTGCATCCAGAGTTGTTTTCAGATGATTCAAATACAT  1044
             |||||| |||||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct  258   TTACACTAACATGGCAA-GGACGTTGCATCCAGAGTTGTTTTCAGATGATACAAATACAT  316

Query  1045  G  1045
             |
Sbjct  317   G  317



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51122831697


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5