BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55870.1
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348673 jgi|Araly1|348673|fgenesh1_pg.C_scaffold_5002065 2388 0.0
> Ahg348673 jgi|Araly1|348673|fgenesh1_pg.C_scaffold_5002065
Length=1563
Score = 2388 bits (1293), Expect = 0.0
Identities = 1491/1581 (94%), Gaps = 35/1581 (2%)
Strand=Plus/Plus
Query 259 AAGAAGGAGAATCTTGTTCCGCTTCGTCACACCATTTTCTCCGACCATCTCACTCCTGTT 318
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAGAAGGAGAATCTTGTTCCTCTTCGTCACACCATTTTCTCCGACCATCTCACTCCTGTT 63
Query 319 CTTGCTTACCGTTGTCTTGTCAAAGAAGATGATCAAGAGGCTCCAAG-TTTCCTTTTCGA 377
|| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 64 CTCGCTTACCGTTGTCTTGTCAAAGAAGATGATCAAGAGGCTCCAAGCTTT-CTTTTCGA 122
Query 378 ATCTGTTGAGCCAGGACATCACTCTTCCAC---T----G-T-T--TGTCGTTGGAGCGCA 426
|||||||||||||||||||||||||||||| | | | | |||||||||||||||
Sbjct 123 ATCTGTTGAGCCAGGACATCACTCTTCCACTGTTGGAAGATATAGTGTCGTTGGAGCGCA 182
Query 427 TCCGAAAATGGAAATTGTGGCAAAGGAGAATAAAGTTACAGTCATGGATCATGTGAAAGG 486
||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 183 TCCGAAAATGGAAATTGTGGCTAAGGAGAACAAAGTGACAGTCATGGATCATGTTAAAGG 242
Query 487 CACTAAGACTACAGAGGAAGTTGAAGATCCAATGATGATTCCTAGAAGAATCTCAGAGAC 546
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 243 CACTAAGACTACAGAGGAAGTTGAGGATCCAATGATGATTCCTAGAAGAATCTCAGAGAC 302
Query 547 TTGGAAACCACAATTGATCGATGATCTTCCTGATGTTTTTTGTGGTGGATGGGTTGGTTA 606
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TTGGAAACCTCAATTGATCGATGATCTTCCTGATGTTTTTTGTGGTGGATGGGTTGGTTA 362
Query 607 CTTTTCTTATGATACTGTTCC-CTATGCCGAAAAGCGAAAGCTACCTCTCTCAAAGGCTC 665
||||||||||||||||| ||| |||||| ||||| |||||||||||| |||| |||||||
Sbjct 363 CTTTTCTTATGATACTG-TCCGCTATGCTGAAAAACGAAAGCTACCTTTCTCCAAGGCTC 421
Query 666 CGGTTGATGACCGAAATTTACCAGATATGCATCTTGGTCTTTATGATGATGTGGTTGTGT 725
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 422 CGGTTGATGACCGGAATTTGCCAGACATGCATCTTGGTCTTTATGATGATGTGATTGTGT 481
Query 726 TTGATCATGTCGAAAAGAAAATACATATAATTCATTGGGTGAGGTTATCAGAAAACTCAT 785
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 482 TTGATCATGTCGAAAAGAAAATCCATATAATTCATTGGGTGAGGTTATCAGGAAACTCAT 541
Query 786 CATTTGATGATGTTTATGCTAATGCTGTGAAACACTTGGAAGAACTTGTTTCGAGGATCA 845
|||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||
Sbjct 542 CATTTGATGATGTTTATGGTAATGGTATGAAACACTTGGAAGAGCTTGTTTCGAGGATCA 601
Query 846 AATGCATGAATCCCCCCAAGCTACCTTATGGATCAGTGGACTTGCACACAAATCAATTTG 905
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 602 AATGCATTAATCCCCCCAAGCTACCTTATGGATCAGTGGACTTACACACAAATCAATTTG 661
Query 906 GCACTCCTTTGGAAAAATCAAGCATGACAAGTGATGCATATAAGAATGCTGTACTTCAAG 965
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 662 GCACTCCTTTGGAGAAATCTAGCATGACAAGTGATGCGTATAAGAATGCTGTACTTCAGG 721
Query 966 CCAAAGAACACATACTGGCTGGAGATATCTTTCAGATTGTTTTAAGTCAAAGATTTGAGC 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CCAAAGAACACATACTGGCTGGAGATATCTTTCAGATTGTTTTAAGTCAAAGATTTGAGC 781
Query 1026 GCCACACTTTTGCCCATCCGTTTGAAGTTTATCGAGCTTTGAGAATTGTGAACCCAAGTC 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GCCACACTTTTGCCCATCCGTTTGAAGTTTATCGAGCTTTGAGAATTGTGAACCCAAGTC 841
Query 1086 CTTCTATGTGTTACTTGCAAGCAAGAGGTTGTATTCTAGTAGCGTCAAGTCCTGAGATTC 1145
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 842 CGTCTATGTGTTACTTGCAAGCAAGAGGTTGTATTCTAGTAGCTTCAAGTCCTGAAATTC 901
Query 1146 TCACTAGAGTGAAGAAAAACAAGATCGTGAATAGACCACTAGCAGGAACTGCAAGACGAG 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 902 TCACTAGAGTGAAGAAAAACAAGATCGTGAATAGACCACTAGCAGGAACTGCAAGGCGAG 961
Query 1206 GAAAGAGTTTCGAGGAGGATCAAATGTTGGAGGAGGCACTTTTAAAAGATGAAAAACAGT 1265
| ||||||||||| || |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 962 GCAAGAGTTTCGAAGAAGATCAAATGTTGGAGGAGACACTTTTAAAAGACGAAAAACAGT 1021
Query 1266 GTGCAGAACACATCATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGGTGTCCAAGA 1325
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GTGCTGAACACATTATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGGTGTCCAAGA 1081
Query 1326 ACGGCTCAGTGAAAGTAGAAAGGCTCATGAATATAGAGCGTTATTCTCATGTCATGCATA 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 ACGGCTCAGTGAAAGTAGAAAGGCTCATGAATATAGAGCGTTATTCTCATGTCATGCATA 1141
Query 1386 TTAGCTCAACGGTGATTGGAGAGTTGCAAGAGAATCTGACTTGCTGGGACACGCTTCGTG 1445
||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1142 TTAGCTCAACGGTGACTGGAGAGTTGCAAGAGAATCTGACTTGCTGGGACACTCTCCGTG 1201
Query 1446 CTGCTTTACCCGTTGGAACCGTTAGCGGAGCTCCAAAGGTGAAGGCTATGGAGTTGATCG 1505
| |||||||| |||||||| | | | | |||||||||||||| ||||
Sbjct 1202 CGGCTTTACCAGTTGGAAC--T--G------T-----G---AAGGCTATGGAGTTAATCG 1243
Query 1506 ATGAGCTAGAGGTGACTAGAAGAGGTCCATATAGTGGTGGATTCGGTAGTGTCTCATTCA 1565
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1244 ATGAGCTAGAGGTGACTAGAAGAGGTCCGTACAGTGGTGGATTCGGTAGTGTCTCATTCA 1303
Query 1566 CTGGAGACATGGACATAGCTTTGGCTCTTAGGACCATTGTGTTCCCAACACAAGCTCGTT 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 CTGGAGACATGGACATAGCTTTGGCTCTTAGGACCATTGTGTTCCCAACACAAGCTCGTT 1363
Query 1626 ACGACACAATGTACTCATACAAAGACAAAGACACGCCACGCCGTGAGTGGATAGCCTATC 1685
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1364 ACGACACAATGTACTCATACAAAGACAAAGACACGCCTCGCCGTGAGTGGATAGCTTATC 1423
Query 1686 TACAAGCAGGTGCAGGCATTGTAGCTGATAGTGACCCAGAGGATGAGCACCGTGAGTGTC 1745
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1424 TGCAAGCAGGTGCAGGCATTGTAGCCGATAGTGACCCAGAGGATGAGCACCGTGAGTGCC 1483
Query 1746 AGAACAAAGCTGCTGGG-CTAGCACGTGCCATTGACTTGGCTGAGTCTGCATTCGTTGAT 1804
||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1484 AGAACAAAGCTGC-GGGACTCGCACGTGCCATTGACTTGGCTGAGTCTGCATTCGTTGAT 1542
Query 1805 AAAAGTGATACAACAATCTAG 1825
|||| ||||||||| ||||||
Sbjct 1543 AAAATTGATACAACCATCTAG 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73780804565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5