BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55880.2
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486031 jgi|Araly1|486031|fgenesh2_kg.5__2023__AT3G55880.2 1550 0.0
> Ahg486031 jgi|Araly1|486031|fgenesh2_kg.5__2023__AT3G55880.2
Length=1137
Score = 1550 bits (839), Expect = 0.0
Identities = 1074/1178 (91%), Gaps = 54/1178 (5%)
Strand=Plus/Plus
Query 2 AAAATAAGTCTCTACCAAAAAACCTCTCTCTCCAGAAACCAAATCACACTTACATCATAA 61
|||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAAATAAGTCTCCGCAAAAAAACTTCTCTCTCCAGAAACCAAATCACACTTACATCACAA 60
Query 62 ATCCTCTGTACATAACC---CaaaaaaaaCCCTAGAAACGAAGAAAGATCAAGATGGGTT 118
||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct 61 ATCCTCTGTACATAACCAAAAAAAAAAAACCCTAGAAAAGAAGAAAAATCAAGATGGGTC 120
Query 119 TGATTAGCAAAGAAGAGATAAGCAAAACAAGAAGATATTCATCTTCTCTTTGGAGAGGTA 178
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 121 TGATCAGCAAAGAAGAGATTAGCAAAACAAGAAGATATTCATCTTCTCTTTGGAGAGGAA 180
Query 179 TCAAAACGATCTTTGTTCTCTTCACTATGTTTCTCTCTTTCATCATCTTTTCTGCTCCGA 238
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 181 TCAAAACGATCTTTGTTCTCTTCACTATGTTTCTCTCTTTTATCATCTTCTCTGCTCCGA 240
Query 239 TCTTCCTCGCCGTCGCCGACGCCGtcctcccctccgcaatcctctcatcctcctcac-cc 297
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 241 TCTTCCTCGCCGTCGCCGACGCCGTCCTCCCCTCCGCAATCCTCTCCTCCTCCTC-CTCC 299
Query 298 tccctcaaccgcctatctcctTC-TAGTTTTCCGGCGACGATTTATTCTTACCTCAGTAA 356
|||||||||||||| ||||| || |||||| |||||||||||||||||||| ||||| ||
Sbjct 300 TCCCTCAACCGCCTTTCTCC-TCATAGTTTCCCGGCGACGATTTATTCTTATCTCAGCAA 358
Query 357 CTACGATTTCCGTTACTCTCTCATCGACATACCTCTCATCTCCATAATTAGATCTGCCAT 416
|||||||||| | |||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 359 CTACGATTTCAGATACTCTCTCATCGATATACCTCTCATCTCCATCACTAGATCTGCCAT 418
Query 417 TATACTATGCGTTTACGGGCTTTGTGACGGACCAAAGTTATCAAGGGGACCATATCTGAC 476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 TATACTATGCGTTTACGGGCTTTGTGACGGGCCAAAGTTATCAAGGGGACCATATCTGAC 478
Query 477 AATAACGATGATATGCTCGATATCTTCACTGATATACGTATCGTTCAAGGCAGCAATTGT 536
|||||||||| ||||||||||||||||| | |||||||||||||| |||||||| ||||
Sbjct 479 AATAACGATGGTATGCTCGATATCTTCATTAATATACGTATCGTTTAAGGCAGCGGTTGT 538
Query 537 ATTCGGAGAGCCAGTGATCGGAGGATATTTCCGAACAGAGGAAATGGCTCTCTTTCTATG 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 GTTCGGAGAGCCAGTGATCGGAGGATATTTCCGAACAGAGGAAATGGCTCTCTTTGTATG 598
Query 597 TTCTTGGATCTTAGCCATCGGTCACATCGTTGTGGCGTACCGTACAAGTTGTAGAGAGAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTCTTGGATCTTAGCCATCGGTCACATCGTTGTGGCGTACCGTACAAGTTGTAGAGAGAG 658
Query 657 ACGAAAGCTCCTAGTCTTCAAAATCGACATCGAATCCGTTTCAGCTTGTAAAAATGTGTT 716
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAGAAAGCTCCTAGTCTTCAAAATCGACATCGAATCCGTTTCAGCTTGTAAAAATGTGTT 718
Query 717 TCCCAGATATCAAAAAATCCTCCAACAAGAGAGACTCAAATAGCTAGCTATATTCGAAGT 776
|||| |||| |||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 719 TCCCCGATACCAAAAAATCCTCCAACAAGAGAGACTCAAATAGCTA---ATAT---A--T 770
Query 777 CAATCGTCACATGTACATATATACTTACAGTACAAGCTACATGTATATAAATATACGTAT 836
| | | | ||| ||| | | || | | | | |||||||||||||||||||
Sbjct 771 -A--C-T----T--ACA-ATA--C--A-AG--CTA-C-A--TGTATATAAATATACGTAT 808
Query 837 CTATGCAACATC-TACTGG-GTTT-TGGTCTCCTTTCATG-TT-CGAGAAAAGTCCAAAG 891
| |||||| | || || |||| | || | ||| || || | ||||| ||||||||
Sbjct 809 CAATGCAAG-TGATAATGTTGTTTATTGTGTG-TTT--TGGTTAC-AGAAAGGTCCAAAG 863
Query 892 GATATAATCTGTAAAGGAGGAAGGAACAGATAACGAATGGGGCTTAATATATATAACCTA 951
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 864 GATATAATCTGTAAAGGAGGAAGGAACAGATAACGAATGGGGCTTAATATATA-A-CCTA 921
Query 952 TGCTTTTCCATGTGAGACTACAAAAGACAACTCCAATGAATTGGCAGTTGTTACTATACT 1011
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 922 TGCTTTTCCATGTGAGACTACACAAGACAACTCCAATGAATTGGCAGTTGTTACTATATT 981
Query 1012 ATAGATTTTAAATT-AGGTATAGACACA-AAGAAAAGGAAGAACATTATACTAGTTCTTC 1069
|||||||||||||| ||||||||||||| || ||||| |||||||||||| |||||||||
Sbjct 982 ATAGATTTTAAATTTAGGTATAGACACACAA-AAAAG-AAGAACATTATATTAGTTCTTC 1039
Query 1070 TTACAAATGATCCACCGTTACACTTTTGTCCTTTTTGTTTGTTTGTATAAA-CCATATTT 1128
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1040 TTATAAATGATCCACCGTTACACTTTTGTCCTTTTTGTTTGTTTGTATAAAACCATATTT 1099
Query 1129 TCATCAATGAGATAAGAAGCCGAAGGCATCTTTCTTCC 1166
||||||||||||||||||||||||||||||||||||||
Sbjct 1100 TCATCAATGAGATAAGAAGCCGAAGGCATCTTTCTTCC 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43536371214
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5