BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G55890.1

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938536 jgi|Araly1|938536|scaffold_502727.1                        625    1e-178


> Ahg938536 jgi|Araly1|938536|scaffold_502727.1
Length=409

 Score =  625 bits (338),  Expect = 1e-178
 Identities = 388/411 (94%), Gaps = 7/411 (2%)
 Strand=Plus/Plus

Query  73   GAGA-TTTTTGGA-TCAAAAGATGGGTAGGGTTTTTATGGTTGATCTGGAAGGGAACATC  130
            |||| ||||| || || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1    GAGATTTTTTTGATTC-AAAGATGGGTAGGGTGTTTATGGTTGATCTGGAAGGGAACATC  59

Query  131  TACATCTGCAAACTCTGTAAGACCCATCTTTCTACAGACCAAGACATCATGTCCAAGTCT  190
            ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct  60   TACATCTGCAAACTCTGTAAGACCCATCTCTCCACAGACCAAGACATCATCTCCAAGTCT  119

Query  191  TTTCAATGCAAGAACGGAAGAGCTTATCTTTTCAACAACGTTGTAAACGTATCTGTTGGA  250
            |||||||||||| | ||| | |||||||| ||||| ||||||||||||||||| ||||||
Sbjct  120  TTTCAATGCAAGCATGGAGGGGCTTATCTCTTCAATAACGTTGTAAACGTATCGGTTGGA  179

Query  251  GAGAAAGAAGACAGAATGATGATAACTGGACTACACAACGTAGTTGACATTTTCTGTGTT  310
            | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  180  GTGAAAGAAGACAGAATGATGATAACTGGACTACACACCGTAGTTGACATTTTCTGTGTT  239

Query  311  GGTTGTGGATCAAACGTTGGCTGGAAATACGAGTTTGCACATGAAAAGAGCCAGAAGTAT  370
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  240  GGTTGTGGATCAAACGTTGGCTGGAAATACGAGTTTGCACATGATAAGAGCCAGAAGTAC  299

Query  371  AAGGAAGGAAAATCTGTTCTTGAATTATACAAGATTTCGGGTCCTCATGATAGCAACGAC  430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  AAGGAAGGAAAATCTGTTCTTGAATTATACAAGATTTCGGGTCCTCATGATAGCAACGAC  359

Query  431  TTGGTTAGTGATGGAGATGATGCTTGATTGAGGCTTTTTCCTTGTCTAGTT  481
            |||||||||||||||||||||||||||  | | ||||||||||||||||||
Sbjct  360  TTGGTTAGTGATGGAGATGATGCTTGA--G-G-CTTTTTCCTTGTCTAGTT  406



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21634218963


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5