BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55910.1
Length=488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898532 jgi|Araly1|898532|Al_scaffold_0005_2498 298 3e-80
> Ahg898532 jgi|Araly1|898532|Al_scaffold_0005_2498
Length=282
Score = 298 bits (161), Expect = 3e-80
Identities = 243/283 (86%), Gaps = 4/283 (1%)
Strand=Plus/Plus
Query 2 ATGAAGAAGGCGCTCACCACAAGACATCCTCCAATAGATGTTTATTGTATCTGTAGGGAA 61
||||||||||||||||| ||||||| ||||||||||||| |||||| |||| |||| |||
Sbjct 1 ATGAAGAAGGCGCTCACTACAAGACGTCCTCCAATAGATATTTATTTTATCCGTAGCGAA 60
Query 62 GTGACAGAGGTAATGGAGAAATTGCATGCCGCGGATGCTGAAACCATCCCTCTTGCCAGC 121
|||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |
Sbjct 61 GTGACAGAGGTAATGGAGAAATTGCATGCCTCCGATGCTGAAACCATCCCTCGTGCCACC 120
Query 122 AATATACAAATGGTCAA-C-ATGGTGAATAACTACGTCATTATGTCCTACGGGCTTCTTC 179
|||| |||||||||| | || ||||| ||||||||| ||||| || ||| ||||
Sbjct 121 CGTATAGAAATGGTCAACCAAT--TGAATTGCTACGTCATAATGTCATATTGGCGTCTTT 178
Query 180 ACGATGATTATGAATACGGAGCCATAACTGAGAGTTGCCGAAAGGATGTGCTGCTCTTAT 239
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 179 GCGATGATTATGAATACGGACCCATAATTGAGAGTTGCCGAAAGGATGTGCTGCTCTTAT 238
Query 240 TGAGGGAGTTATTTCCGAGGAAAATATATTTGTGGGAAAATTA 282
||| ||| ||| |||| || |||| || | |||||||||
Sbjct 239 TGAATGAGATATATCCGCCGATAATAGATACGCCGGAAAATTA 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17704193296
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5