BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55920.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486034 jgi|Araly1|486034|fgenesh2_kg.5__2026__AT3G55920.1 1190 0.0
> Ahg486034 jgi|Araly1|486034|fgenesh2_kg.5__2026__AT3G55920.1
Length=733
Score = 1190 bits (644), Expect = 0.0
Identities = 712/743 (96%), Gaps = 12/743 (2%)
Strand=Plus/Plus
Query 29 GGAGTAATGGCAATTACGGCGACTAGATTGGTCTCACTGACTCTCTTATGGATTGTCGTC 88
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 GGAGTAATGGCGATTACGGCGACTAGATTGGTCTCTCTGACTCTCTTATGGATTGTCGTC 60
Query 89 CTCTTCGTCACACTTGCTCTCATTCAGATCAAATTGACTGATGTTGCAGATCCTAGTGTC 148
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTCTTCGTCACACTTGCTCTCATTCAGATCAAATTGACTGATGTTGCGGATCCTAGTGTC 120
Query 149 AATGAGAAGATTCTTGATGCTAAGCTCAATCAGGTGGGAGAGGATTTAGAAGGAGTTACA 208
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 AATGAGAATATTGTTGATGCTAAGCTCAATCAGGTGGGAGAGGATTTAGAAGGAGTAACC 180
Query 209 CACAAAGTTTACTTTGACATTCAGATCAATGGTTCACCAGCAGGGCGCATTCTCATCGGC 268
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CACAAAGTTTACTTTGACATTCAGATCAATGGTTCACCAGCAGGACGCATTCTCATCGGC 240
Query 269 CTTTTTGGAAATATAGTTCCTAAAACTGCAGAGAACTTTCG-GTCACTTTGCACGGGAGA 327
|||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 241 CTTTTTGGGAAGATAGTTCCTAAAACTGCAGAGAACTTTCGAG-CACTTTGCACGGGAGA 299
Query 328 GAAAGGAGTTGGAAACATGGGGAAACCTCTTTATTTCAAAGGAAGTAGCTTCCATAGGAT 387
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 GAAAGGAGTTGGAAACATGGGGAAACCTCTTTATTTCAAAGGAAGCAGCTTCCATAGGAT 359
Query 388 CATTCCTGGCTTCATGATTCAGGGTGGAGATTTTACACGAGGCGATGGACGAGGTGGAGA 447
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 CATTCCTGGCTTCATGATTCAGGGTGGAGATTTTACACGAGGCGATGGGCGAGGTGGAGA 419
Query 448 GTCGATATATGGAGATAAATTTGCAGATGAGAACTTTAAACTCAAACACACTGGGCCAGG 507
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTCGATATATGGTGATAAATTTGCAGATGAGAACTTTAAACTCAAACACACTGGGCCAGG 479
Query 508 ATTTTTATCAATGGCAAACTCGGGACCAGACTCCAACGGTTCACAGTTCTTCATCACAAC 567
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 480 ATTTTTATCAATGGCAAACTCGGGACCAGATTCCAATGGTTCACAGTTCTTCATCACAAC 539
Query 568 AGTCACCACGAGTTGGTTGGACGGACATCACGTTGTGTTTGGGAAGGTATTGTCTGGCAT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGTCACCACGAGTTGGTTGGACGGACATCACGTTGTGTTTGGGAAGGTATTGTCTGGCAT 599
Query 628 GGAAGTAGTGCGCAAGATCGAAGCCCAGGGACAAGACAGTGGAGTGCCCAAAGCTA-ATG 686
|||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||
Sbjct 600 GGAAGTAGTGCGCAAGATCGAAGCGCAGGGACAAGACAGTGGAGTGCCCAAAGG-ACATG 658
Query 687 TTATTATTTTTGCTAGTGGAGAAGTTTCTTTGTAATATCGTCTTCAAGTTTTTTCTTCAT 746
||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 659 TTATTGTTTTTGCTAGTGGAGAAGTTTCTTTGTAATATCGT-TT----TTT---CTTCAT 710
Query 747 CCGAATGAACAAGAGACCAAGAT 769
|||||||||||||||||| ||||
Sbjct 711 CCGAATGAACAAGAGACCGAGAT 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5