BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55930.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938540 jgi|Araly1|938540|scaffold_502731.1 809 0.0
Ahg473006 jgi|Araly1|473006|fgenesh2_kg.1__2960__AT1G28060.1 765 0.0
> Ahg938540 jgi|Araly1|938540|scaffold_502731.1
Length=637
Score = 809 bits (438), Expect = 0.0
Identities = 567/624 (91%), Gaps = 29/624 (5%)
Strand=Plus/Plus
Query 713 CACAAAAATCAAAGGTGAAAATGAGCAACCTAATGAAGGTTCGTGCGTCTGAAGCAACGC 772
|||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 1 CACAAAGATCAAAGGTGAAAATGGGCAACCTAATGAAGGTTCTTGCGTCTGAAGCAACCC 60
Query 773 AAAACCCAACCAAGCTTGAAAAAGAGATCCGCACAGAAGCTGCTGAGCGTGAACAAGCTC 832
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 AAAACCCAACCAAGCTTGAAAAAGAGATCCGCACAGCAGCTGCTGAGCGTGAACAAGCTC 120
Query 833 ACATGGATAGGAACGTAGCGAGGAAGCTAACTCCTGCAGAGAAACGTGAGAAGAAAGAAA 892
| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 121 ATATGGAAAGGAACGTAGCGAGGAAGCGAACTCCTAAAGAGAAACGTGAGAAGAAAGAAA 180
Query 893 GGAAGCTTTTTGGTGATCCAACGACAGTTGTTGAGACGATTGTGTCGGTGTACAAGATCA 952
||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GGAAGGTCTTTGATGATCCAACGACAGTTG---AGACGATTGTGTCGGTGTACAAGATCG 237
Query 953 ACAAGAAGCTATCGGATCCGAAAACAAGATTCAAAGTG-AGGATGAATGCAAAACAGAAC 1011
|||||||||||||| |||| |||||||||||||||||| || | ||||||||||||||||
Sbjct 238 ACAAGAAGCTATCGCATCCCAAAACAAGATTCAAAGTGGAG-AGGAATGCAAAACAGAAC 296
Query 1012 ATATTAACAGGGTTTAGTGTGATGATGGATGGA-ATGAGTGTTGTTGTGGTTGAGGGTAA 1070
| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 297 AAATTAACAGGGTTTTGTGTGATGATGGATA-ATATGAGTGTTGTTGTGGTTGAGGGTAA 355
Query 1071 GAGAAAAGCAATAAATAGGTACGAGAAGCTGATGCTGAAGCGTATAAACTGGgaa--g-- 1126
||| ||||||||||| || |||||||||||||||||||||||||||||||||||| |
Sbjct 356 GAGCAAAGCAATAAAGAGATACGAGAAGCTGATGCTGAAGCGTATAAACTGGGAAAAGGC 415
Query 1127 aa-gcaga-g-aaga--aggaaga---tgaagaaga-gaa-----TGGTGGAAACAAGTG 1172
|| | ||| | |||| ||||||| ||||||||| ||| |||||||||||||||
Sbjct 416 AAAGAAGAAGGAAGACGAGGAAGAAGATGAAGAAGAAGAAGAGAATGGTGGAAACAAGTG 475
Query 1173 TTGTTTGGTTTGGCAAGGAAGTGTTGAGAAACCGAGTTTTCATAGGTTTCATGTACAAGA 1232
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTGGTTGGTTTGGCAAGGAAGTGTTGAGAAACCGAGTTTTCATAGGTTTCATGTACAAGA 535
Query 1233 GTGCTTGACCAAATCCGATGCCAAGAAAGTTTTCA-ATGATGCTGGTGTTGCTCACTA-T 1290
||||||||||||||| | ||||||||||||||||| | |||||||||||||||||||| |
Sbjct 536 GTGCTTGACCAAATCTGCTGCCAAGAAAGTTTTCACA-GATGCTGGTGTTGCTCACTACT 594
Query 1291 TGGGATCTTGCTCTCAATTACTAA 1314
||| |||||||||||||| |||||
Sbjct 595 TGG-ATCTTGCTCTCAATAACTAA 617
> Ahg473006 jgi|Araly1|473006|fgenesh2_kg.1__2960__AT1G28060.1
Length=2479
Score = 765 bits (414), Expect = 0.0
Identities = 701/835 (84%), Gaps = 37/835 (4%)
Strand=Plus/Plus
Query 502 ATGGACACCATTACTGA-GAACCATCTGAATAT-GAAAGTTTTTAATTGTCATATTGAGC 559
|||| |||||| ||||| | ||||||||| || |||| ||| | | | |||||||
Sbjct 1558 ATGG-CACCATAACTGATG-GCCATCTGAAGATAGAAA-AACTTACTCATTACATTGAGC 1614
Query 560 ATCCATTTCCCATAGAGCCACCTGCAGAGGCTGCGTCTCCACCTCCCCAACCTCTTAAAA 619
|||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 1615 ATCCGCGTCCCATAGAGCCACCTGCAGAGGCAGCGCCTCCACCACCCCAACCTCTTAAAC 1674
Query 620 TGACAAAGGAGGAACGGAAGAAACTGCGAACTCTA-AGGCGTGTGGCAAAAGAAATGGAG 678
|||||||| |||||| ||||||||||||||| | | |||||| | |||||||||| ||||
Sbjct 1675 TGACAAAGAAGGAACAGAAGAAACTGCGAAC-CCAGAGGCGTCTAGCAAAAGAAAAGGAG 1733
Query 679 AAACGGGAGATGATTAGTCAAGGAAGGGTTGAACCACAAAAATCAAAGGTGAAAATGAGC 738
|||| ||||||||| || ||||| | | ||||||| ||| |||||||||| |||||
Sbjct 1734 AAACAGGAGATGATCAGACAAGGGTTGCTGGAACCACCAAAGGCAAAGGTGAAGATGAGT 1793
Query 739 AACCTAATGAAGGTTCGTGCGTCTGAAGCAACGCAAAACCCAACCAAGCTTGAAAAAGAG 798
||| |||||||||||| || ||||||||| || ||| |||||||||||||||||||||||
Sbjct 1794 AACTTAATGAAGGTTCTTGGGTCTGAAGCGACCCAAGACCCAACCAAGCTTGAAAAAGAG 1853
Query 799 ATCCGCACAGAAGCTGCTGAGCGTGAACAAGCTCACATGGATAGGAACGTAGCGAGGAAG 858
|||||||| | |||||| ||||||||||| ||||| | ||| ||||| | || ||||
Sbjct 1854 ATCCGCACCGCAGCTGCGGAGCGTGAACAGGCTCATACGGACAGGAATGCCGCCCGGAAA 1913
Query 859 CTAACTCCTGCAGAGAAACGTGAGAAGAAAGAAAGGAAGCTTTTTGGTGATCCAACGACA 918
||||| |||||||||||||||||||||||||| ||||||||||| | ||||||||| ||
Sbjct 1914 CTAACCCCTGCAGAGAAACGTGAGAAGAAAGAGAGGAAGCTTTTCGATGATCCAACAAC- 1972
Query 919 GTTGTTGAGACGATTGTGTCGGTGTACAAGATCAACAAGAAGCTATCGGATCCGAAAACA 978
| |||||||| ||||| ||||| ||||||||||| || | ||||||| |||| ||||||
Sbjct 1973 G--GTTGAGACAATTGTCTCGGTATACAAGATCAA-AA-A-GCTATCGCATCCTAAAACA 2027
Query 979 AGATTCAAAGTG-AGGATGAATGCAAAACAGAACATATTAACAGGGTTTAGTGTGATGAT 1037
|||||||||||| || |||||||||| | |||||| ||||||||||| |||||||||||
Sbjct 2028 AGATTCAAAGTGGAG-ATGAATGCAAGAGAGAACAGATTAACAGGGTGTAGTGTGATGAC 2086
Query 1038 GGATGGAATGAGTGTTGTTGTGGTTGAGGGTAAGAGAAAAGCAATAAATAGGTACGAGAA 1097
||| ||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| |||
Sbjct 2087 GGAGGGAATGAGTGTGGTTGTGGTTGAGGGCAAGAGCAAAGCGATAAAGAGATACGGGAA 2146
Query 1098 GCTGATGCTGAAGCGTATAAACTGGgaagaagcagagaagaagga--aga-tgaaga--a 1152
||||||||||||||| ||||||||| |||| |||||||||||||| ||| |||||| |
Sbjct 2147 GCTGATGCTGAAGCGAATAAACTGGCAAGAGGCAGAGAAGAAGGATGAGAATGAAGATGA 2206
Query 1153 g-a-gaaT--G--GTG---G----AAACAAGTGTTGTTTGGTTTGGCAAGGAAGTGTTGA 1199
| | ||| | ||| | |||||| ||||| |||||||||||||||||| |||
Sbjct 2207 GGAAGAAGAAGAAGTGAATGGCGGAAACAAATGTTGGTTGGTTTGGCAAGGAAGTATTGG 2266
Query 1200 GAAACCGAGTTTTCATAGGTTTCATGTACAAGAGTGCTTGACCAAATCCGA-TGCCAAGA 1258
||||||||| |||||||||||||||||||| || ||| |||| ||||| | ||||||||
Sbjct 2267 GAAACCGAGCTTTCATAGGTTTCATGTACATGATTGCGTGACGGAATCC-ACTGCCAAGA 2325
Query 1259 AAGTTTTCAATG-ATGCTGGTGTTGCTCACTATTGGGATCTTGCTCTCAATTACT 1312
||||||||| || |||||||||||| |||||| |||||||| ||| |||||||||
Sbjct 2326 AAGTTTTCA-TGGATGCTGGTGTTGTTCACTACTGGGATCTCGCTGTCAATTACT 2379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5