BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55940.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486035 jgi|Araly1|486035|fgenesh2_kg.5__2027__AT3G55940.1 2878 0.0
Ahg903709 jgi|Araly1|903709|Al_scaffold_0003_837 747 0.0
> Ahg486035 jgi|Araly1|486035|fgenesh2_kg.5__2027__AT3G55940.1
Length=1758
Score = 2878 bits (1558), Expect = 0.0
Identities = 1693/1759 (96%), Gaps = 5/1759 (0%)
Strand=Plus/Plus
Query 1 ATGTCGAAGCAAACATACAAAGTCTGTTTCTGTTTCCGTCGGAGGTACCGACACACTGTG 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGTCGAAGCAAACATACAAAGTCTGTTTCTGTTTCCGTCGGAGGTATCGACACACTGTG 60
Query 61 TCCGTAGCTCCTG-CTGAGATCAAAACACTTTTCGACAATTACTCCGACAAAGGTCTCAT 119
||||| ||||| | |||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 61 TCCGTTGCTCC-GCCTGAGATCAAGACACTTTTCGACAAATATTCCGACAAAGGTCTCAT 119
Query 120 GACTACCGATCTCCTCCTCAGATTCCTAATCGATGTTCAGAAACAAGACAAAGCCACGAA 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GACAACCGATCTCCTCCTCAGATTCCTAATCGATGTTCAGAAACAAGACAAAGCCACGAA 179
Query 180 AGAAGAAGCTCAAGATATCGTCAATGCTTCTTCTTCTCTTCTTCATCGTAATGGTCTCCA 239
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 AGAAGAAGCTCAAGAAATCGTCAATGCTTCATCTTCTCTTCTTCATCGTAATGGTCTCCA 239
Query 240 CCTTGATGCTTTCTTCAAATACCTTTTCGCTGTTACCAACTCTCCTCTTTCTTCTCTTGA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 CCTTGATGCTTTCTTCAAATACCTTTTCGCTGTTACCAACTCTCCTCTTTCTTCTCAGGA 299
Query 300 GGTGCATCAAGATATGGATGCTCCATTATCACATTATTTCATATATACAGGACATAATTC 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 GGTGCATCAAGATATGGATGCTCCATTATCACATTATTTCATATTTACAGGACATAATTC 359
Query 360 GTATTTAACAGGTAATCAACTAAGTAGTGATTGCAGTGAATTGCCTATCATTGAGGCATT 419
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 360 GTATTTAACTGGTAATCAACTGAGTAGTGATTGCAGTGAATTGCCTATCATTGAAGCATT 419
Query 420 GAAAAAAGGTGTTAGAGTTATTGAATTAGATATTTGGCCTAACTCTGATGAAGATGGTAT 479
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 420 GAAAAAAGGTGTTAGAGTTATTGAGTTAGATATTTGGCCAAACTCTGATGAAGATGGTAT 479
Query 480 CGATGTTCTTCATGGAAGGACTCTTACATCACCTGTGGAGCTGATAAAATGTCTAAGAGC 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 CGATGTTCTTCATGGAAGGACTCTTACATCACCTGTGGAGCTGATCAAATGTCTAAGAGC 539
Query 540 TATTAGAGAACATGCTTTTGATGTATCTGATTATCCAGTTGTTGTTACTCTTGAAGATCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TATTAGAGAACATGCTTTTGATGTATCTGATTATCCAGTTGTTGTTACTCTTGAAGATCA 599
Query 600 TCTTACTCCTAAACTCCAAGCTAAAGTTGCTGAGATGGTTACAGATATATTTGGAGAAAT 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTTACTCCAAAACTCCAAGCTAAAGTTGCTGAGATGGTTACAGATATATTTGGAGAAAT 659
Query 660 GTTGTTTACTCCTCCTTCAGGGGAATGTTTGAAGGAGTTTCCATCGCCGGCGTTTTTGAA 719
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 GTTGTATACTCCTCCTTCAGGGGAATGTTTGAAGGAGTTTCCATCGCCCGCGTTTTTGAA 719
Query 720 AAAGCGTATTATGATCTCAACTAAACCTCCTAAAGAGTATAAGGCAGCAACAGATGATGA 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAATCGTATTATGATCTCAACTAAACCTCCTAAAGAGTATAAGGCAGCAACAGATGATGA 779
Query 780 TTTGGTGAAAAAAGGAAGGGATTTGGGTGATAAAGAAGTTTGGGGAAGAGAAGTTCCAAG 839
||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 TTTGGTGAAAAAAGGTAGGAATTTGGGTGATGAAGAAGTTTGGGGAAGAGAAGTTCCAAG 839
Query 840 CTTTATTCGAAGGGACAGAAGTGTTGACAAGAATGATTCAAACGGAgatgatgatgatga 899
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 840 CTTTATTCGAAGGGACAGAAGTGTTGACAAGAATGATTCAAATGGAGATGATGACGATGA 899
Query 900 ---tgatgacgatgacgatgatgatgatgatggtgatgatAAGATTAAGAAGAATGCACC 956
|||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 CGATGATGATGATGATGATGATGATGATGATGGTGATGATAAAATTAAGAAGAATGCACC 959
Query 957 ACCGGAATATAAGCATCTGATTGCAATCGAGGCTGGGAAACCGAAAGGCGGAATAACTGA 1016
|||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 960 ACCGGAATATAAGCATTTGATTGCAATCGAAGCCGGGAAACCGAAAGGCGGGATAACTGA 1019
Query 1017 ATGTTTGAAGGTGGATCCTGATAAAGTAAGACGGCTTAGCTTAAGTGAAGAACAACTTGA 1076
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1020 ATGTTTGAAGGTGGATCCTGATAAAGTAAGACGGCTTAGCTTGAGTGAAGAACAACTTGA 1079
Query 1077 AAAGGCCTCAGAAAAATATGCTAAACAGATTGTGAGGTTCACTCAGAGGAATTTGCTACG 1136
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1080 AAAGGCCTCAGAAAAATATGCGAAACAGATTGTGAGGTTTACTCAGAGGAACTTGCTTCG 1139
Query 1137 GGTTTATCCGAAAGGAACTAGAATTACTTCATCAAACTATAACCCTCTGATCGCTTGGAG 1196
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1140 GGTTTACCCGAAAGGAACTAGAATTACTTCATCAAACTATAACCCTCTGATTGCTTGGAG 1199
Query 1197 CCATGGAGCTCAAATGGTGGCTTTCAATATGCAGGGACTTGGACGATCATTGTGGGTAAT 1256
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1200 CCATGGAGCTCAAATGGTGGCTTTCAATATGCAGGGACTTGGAAGATCATTGTGGGTAAT 1259
Query 1257 GCAAGGAATGTTTAGAGGCAATGGAGGATGTGGCTACATTAAGAAACCTGATCTTTTGCT 1316
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1260 GCAAGGAATGTTTAGAGCCAATGGAGGATGTGGCTACATCAAGAAACCTGATCTTTTGCT 1319
Query 1317 GAAATCCAACGCTGTATTTGACCCGGAAGCTACATTACCTGTAAAAACAACACTAAGGGT 1376
|||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1320 AAAATCCGATGCTGTATTTGACCCAGAAGCTACATTACCTGTAAAAACAACACTAAGGGT 1379
Query 1377 AACTATATACATGGGAGAAGGATGGTACTACGATTTCCCGCATACGCACTTTGATCGATA 1436
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1380 AACTATATACATGGGAGAAGGATGGTACTACGATTTCCCGCACACACACTTTGATCGATA 1439
Query 1437 TTCTCCACCTGATTTCTATACAAGGGTCGGGATTGCTGGAGTTCCCGCGGATACAGTAAT 1496
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1440 TTCTCCACCTGATTTCTATACAAGGGTCGGGATCGCTGGAGTTCCCGCGGATACAATAAT 1499
Query 1497 GAAGAAGACGAAAACATTAGAGGATAATTGGATACCAGCTTGGGACGAGGTTTTTGAGTT 1556
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GAAGAAGACGAAATCATTAGAGGATAATTGGATACCAGCTTGGGACGAGGTTTTTGAGTT 1559
Query 1557 CCCATTAACAGTTCCAGAGCTTGCTCTTCTACGTATCGAGGTACATGAGTATGACATGTC 1616
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1560 CCCATTAACAGTTCCAGAGCTTGCTCTTCTACGTATTGAGGTACATGAATATGACATGTC 1619
Query 1617 TGAGAAAGACGATTTTGGAGGCCAAATTTGCTTGCCGGTTTGGGAGCTGAGGCAAGGAAT 1676
|||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1620 GGAGAAAGATGATTTTGGAGGCCAAACTTGCTTGCCGGTTTGGGAGCTAAGGCAAGGAAT 1679
Query 1677 ACGTGCCGTTCCTCTCCGTAACCAGGATGGTGTCAAGTGTAGATCCGTGAAGCTTCTTGT 1736
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1680 ACGTGCCGTTCCTCTGCGTAACCAGGATGGTGTGAAGTGTAGATCCGTGAAGCTTCTTTT 1739
Query 1737 GCGGTTGGAGTTTGTGTGA 1755
|||||||||||||||||||
Sbjct 1740 GCGGTTGGAGTTTGTGTGA 1758
> Ahg903709 jgi|Araly1|903709|Al_scaffold_0003_837
Length=1695
Score = 747 bits (404), Expect = 0.0
Identities = 698/836 (83%), Gaps = 35/836 (4%)
Strand=Plus/Plus
Query 942 TAAGAAGAATGCACCACCGGAATATAAGCATCTGATTGCAATCGAGGCTGGGAAACCGAA 1001
|||||| ||||||||||| | ||||| ||| ||||||||||| | ||||||||||| ||
Sbjct 873 TAAGAATAATGCACCACCCCAGTATAAACATTTGATTGCAATCCATGCTGGGAAACCAAA 932
Query 1002 AGGCGGAATAACTGAATGTTTGAAGGTGGATCCTGATAAAGTAAGACGGCTTAGCTTAAG 1061
||||||||| ||||| ||||| ||||| ||||||| || || ||||| |||||||| ||
Sbjct 933 AGGCGGAATTACTGAGTGTTTAAAGGTAGATCCTGGCAAGGTTAGACGCCTTAGCTTGAG 992
Query 1062 TGAAGAACAACTTGAAAAGGCCTCAGAAAAATATGCTAAA-CAGATTGTGAGGTTCACTC 1120
|||||||| ||||||||||| ||||||||||||| ||| |||||||||||||| ||||
Sbjct 993 CGAAGAACAGCTTGAAAAGGCAGCAGAAAAATATGC-AAAGCAGATTGTGAGGTTTACTC 1051
Query 1121 AG-AGGAATTTGCT-ACGGGTTTATCCGAAAGGAACTAGAATTACTTCATCAAACTATAA 1178
|| | |||||||| | || |||| || |||||||||||| ||||||||||||| || ||
Sbjct 1052 AGCA-CAATTTGCTGA-GGATTTACCCAAAAGGAACTAGAGTTACTTCATCAAATTACAA 1109
Query 1179 CCC-TCT-GATCGCTTGGAGCCATGGAGCTCAAATGGTGGCTTTCAATATGCAGGGACT- 1235
||| | | | | || |||||||| || ||||||||||||||||||||||||||||| |
Sbjct 1110 CCCGT-TGGTTGGC-TGGAGCCACGGTGCTCAAATGGTGGCTTTCAATATGCAGGGG-TA 1166
Query 1236 TGGACGATCATTGTGGGTAATGCAAGGAATGTTTAGAGGCAATGGAGGATGTGGCTACAT 1295
|||| ||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1167 TGGAAGATCATTATGGCTAATGCAAGGAATGTTTAGAGCCAATGGCGGATGTGGCTACAT 1226
Query 1296 TAAGAAACCTGATCTTTTGCTGAAA--TCCAACGC-T-GT-A--T-TT-GACCCGGAAGC 1346
|||||||||||| || |||||||| | || | || | | || ||||| |||
Sbjct 1227 CAAGAAACCTGATATTCTGCTGAAAAGTGGTTCGGATAGTGACATCTTTGACCCAAAAGT 1286
Query 1347 TACAT-TACCTGTAAAAACAACACTAAGGGTAACTATATACATGGGAGAAGGATGGTACT 1405
||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1287 TAC-TCTACCTGTAAAAACAACACTTAGGGTAACTATATACATGGGAGAAGGCTGGTACT 1345
Query 1406 ACGATTTCCCGC-ATACGCACTTTGATC-GATATTCTCCACCTGATTTCTATACAAGGGT 1463
||||||| || | || ||||| |||| | ||||| || ||||| ||||||||||||||
Sbjct 1346 TTGATTTCC-GCCACACCCACTTCGATCAG-TATTCACCGCCTGACTTCTATACAAGGGT 1403
Query 1464 CGGGATTGCTGGAGTTCCCGCGGATACAGTAATGAAGAAGACGAAAACATTAGAGGATAA 1523
||||| ||||||||||| | ||||||| |||||||||||||||||||| | ||||||||
Sbjct 1404 TGGGATAGCTGGAGTTCCAGGGGATACAATAATGAAGAAGACGAAAACACTGGAGGATAA 1463
Query 1524 TTGGATACCAGCTTGGGACGAGGTTTTTGAGTTCCCATTAACAGTTCCAGAGCTTGCTCT 1583
|||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 1464 TTGGATACCAGCTTGGGATGAGGTGTTTGAGTTCCCGTTAACTGTTCCAGAGCTGGCTCT 1523
Query 1584 TCTACGTATC-GAGGTACATGAGTATGACATGTCTGAGAAAGACGATTTTGGAGGCCAAA 1642
|| || || || || ||||||||||||||||| |||||||| ||||||||||| || |
Sbjct 1524 ACTGCG-ATTAGAAGTGCATGAGTATGACATGTCAGAGAAAGATGATTTTGGAGGACAGA 1582
Query 1643 TTTGCTTGCCGGTTTGGGAGCTGAG-GCAAGGAATACGTGCCGTTCCTCTCCGTAACCAG 1701
|||||||||||||||||||| || | |||||||| | || ||||| | | || || |
Sbjct 1583 CATGCTTGCCGGTTTGGGAGCTAAGCG-AAGGAATAAGAGCATTTCCTTTACATAGCC-G 1640
Query 1702 GAT-GGTGTCAAGTGTAGATCCGTGAAGCTTCTTGTGC-GGTTGGAGTTTGTGTGA 1755
|| || | |||| | ||||||||||||||| ||| ||| |||||||||||||
Sbjct 1641 GAAAGGGGAGAAGTACAAATCCGTGAAGCTTCTCGTGAAGGT-GGAGTTTGTGTGA 1695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5