BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55950.1
Length=2705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938542 jgi|Araly1|938542|scaffold_502733.1 3640 0.0
> Ahg938542 jgi|Araly1|938542|scaffold_502733.1
Length=2453
Score = 3640 bits (1971), Expect = 0.0
Identities = 2323/2489 (93%), Gaps = 39/2489 (2%)
Strand=Plus/Plus
Query 29 GTCAACTTCAACCTCTGTAGATGAAGAGGTTTATCAACTCAACCGTGACGTTTTCCGTCA 88
||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1 GTCAAATTCAACCTCTGTAGATGAAGAGGTCTACCAACTCAACCGTGACGTTTTCCGTCA 60
Query 89 CCGTCACCATCGCCGTTATCA-TCTTCTTCCTCTTGTCTCCCGTCACCTCCTTAGGTTCA 147
|||||||| |||||||||| | |||||||||| |||||||||||||||||||||||||||
Sbjct 61 CCGTCACCGTCGCCGTTAT-ATTCTTCTTCCTTTTGTCTCCCGTCACCTCCTTAGGTTCA 119
Query 148 GGCTCAACTTACGCAGTCGTATACGGCTCCGACACCGTCTGCGCATTGATCTCCGGTCAA 207
||||||||| |||| ||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 120 GGCTCAACTCACGCCGTCGTCTACGGCTCCGACACCGTCTGCGCATTAATCTCCGGCCAA 179
Query 208 CCCACACAACGTATCCTCTGTTACGACACGCGTCTTAATATCAACGTCACTCTAAACCCC 267
||||||| |||||||||||||||||||| || | || || |||||| ||||||||||||
Sbjct 180 TCCACACAGCGTATCCTCTGTTACGACACCCGCCGTAGTACCAACGTTACTCTAAACCCC 239
Query 268 GGCGTCTCATTCTCCTCAATAGCCGCCGGAGATAATTTCCTCTGCGGTATACGCTCCGGT 327
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 240 GGCGTCTCATTCTCCTCAATCGCCGCCGGAAATAATTTCCTCTGCGGTATACGCTCCGGT 299
Query 328 GGTTACAGCCTTCTCTGTTGGGATAACATCGGAAGCTACTCTCCAAACCGGAAACGAATC 387
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 300 GGTTACAGCCTTCTCTGTTGGGATAACATCGGAAGCTACTCTCCTAACCGTAAACGAATC 359
Query 388 TACCAAAACGACAACGTTTTACTCGAGACTCTCTCCGTCGGGGATAAACAAATCTGCGCA 447
||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 360 TACCAAAGCGACACCGTTTTACTCGAGAATCTCTCCGTCGGCGATAAACAAATCTGCGCC 419
Query 448 ACCGTTAACGGTACAAATTCCTTAAAATGCTGGAGAGGTTCCGTTTCCGATCAATCAAAA 507
||||||||||| |||||||| ||||||||||||||| | | |||||||||||||||
Sbjct 420 ACCGTTAACGGCACAAATTCGTTAAAATGCTGGAGA-G----G-TTCCGATCAATCAAAC 473
Query 508 CCTCCGAACGAGAGATTCCGA-TCAATTTCATCCGGCGTTGGTTTCTCCTGCGGCGTTTC 566
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 474 CCTCCGAACGAGAGATTCC-AGTCAATTTCATCCGGCGTTGGTTTCTCCTGCGGCGTTTC 532
Query 567 GATTCGAAATAACCGAATCCTTTGCTGGGGAACCGATCCGGTTAAATCGAATCAGATCCA 626
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GATTCGAAATAACCAAATCCTTTGCTGGGGAACCGATCCGGTTAAATCGAATCAGATCCA 592
Query 627 AACCGGATTCGGAAACACGCCGATGGTGACCATCTCCGCAGGTAAATCACACGCTTGTGG 686
||||||||||||||||||| ||||||| ||||| || |||||| ||||||| ||||||||
Sbjct 593 AACCGGATTCGGAAACACGACGATGGTTACCATATCTGCAGGTGAATCACATGCTTGTGG 652
Query 687 ATTAAACACTACTGGGAATTTGATTTGCATCGGAAACAACGATTCTGGTCAGCTCAATGT 746
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 653 ATTAAACACTACTGGGAATTTGGTTTGCATCGGAAACAACGATTCTGGGCAGCTCAATG- 711
Query 747 TATTGCTCCAGATCAACCTAACCTTTACTCATCAtctctctctctcGGATCAAATTTCAC 806
|| || ||||||||||||||| ||| | |||||||| ||||||||||||||||||||
Sbjct 712 --TTCCTTCAGATCAACCTAACCATTA--C-TCATCTCTATCTCTCGGATCAAATTTCAC 766
Query 807 CTGCGCGATGCGAATCTCGAATAATTCTGTGGTTTGTTGGGGCGGAGGAGCAGAGAGATT 866
|||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 767 TTGCGCGATGCGAATCTCGAACAGTTCGGTGGTTTGTTGGGGCGGAGGAGCAGAGAGATT 826
Query 867 CAACAATGTCACGGATTCGATCTCTTTCGAATCGATTTCCTCGGGTCCGGGTCTAATTTG 926
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 827 CAACAATGTCACGGATTCGATCTCATTCGAATCGATTTCTTCCGGTCCGGGTCTAATTTG 886
Query 927 CGGGTTGATTTCAAGTAATCTCTCAATCATGTGTTGGAATCCTACAAATTTCTCCAGAAT 986
|||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 887 CGGGTTAATTTCAAGTAATCTCTCTATTATGTGTTGGAATCCTTCAAATTTCTCCAGAAT 946
Query 987 CTTCCTCCCTTTCCCAGAAGTTTTACCAGGTCCTTGCGTTGAATCATCATCATCCTCTCT 1046
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |
Sbjct 947 CTTCCTCCCTTTCCCAGAAGTTTTACCAGGTCCTTGCGTTG-A--ATCATCA---TCTGT 1000
Query 1047 TTGCTCTTGTGGTGTTTATCCACAATCTGATAAGCTCTGTTCTGGTACTGGCTCGATTTG 1106
||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 1001 TTGCTCTTGTGGTATTTATCCACAATCTGATAAGCTCTGTTCTGGTTCTGGTTCGATCTG 1060
Query 1107 TAAATCATGTCC-GATTCAATTTCCAGCGAGTCCTCCGAGTCAATTTCCTCTTccaccac 1165
||||||||| || |||||||||||| |||||||||||||||||| ||
Sbjct 1061 TAAATCATG-CCTGATTCAATTTCCGGCGAGTCCTCCGAGTCAA-------TT------- 1105
Query 1166 caccaccaccaccaccGCCATCACCGTCAACTTCATCTCCACCGTCGAAAGCTTTAACAA 1225
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 1106 -ACCACTTCCACCACCGCCATCACCGCCAACTTCGTCTCCACCGTCGAAAGCTTTAACCA 1164
Query 1226 GAGGATTATTAGCGTTTGCGATCGTTGGATCAGTTGGAGCATTTGCAGGGATCTGTAGTG 1285
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1165 GAGGATTATTAGCGTTTGCGATCGTTGGATCAGTTGGAGCGTTTGCAGGGATTTGTAGTG 1224
Query 1286 TGGTTTACTGTTTATGGACTGGAGTTTGCTTGGGGAAGAAGAAAGTTCATAACTCGGTTC 1345
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1225 GGGTTTACTGTTTATGGACTGGAGTTTGCTTGGGAAAGAAGAAAGTTCATAACTCGGTTC 1284
Query 1346 AACCGACGATAACTCGCGGTGGTTCTAATAGCCGGTCTAACAGTTCGAATAGCCGGTCGT 1405
||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 1285 AACCGACTATAACTCGCGGCGGCTCTAATAGCCGGTCTAACAGCTCGAATAGCCGGTCGT 1344
Query 1406 TATCTATAAGACGTCAAGGATCGAGAATGCTATCAATGAGGAGGCAGAGAAGTGGAACAT 1465
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1345 TAACCATAAGACGTCAAGGATCGAGAATGCTATCAATGAGGAGACAGAGAAGTGGAACAT 1404
Query 1466 CGTCGATGAAGCACGCCGATAAAGCGGAAGAGTTTTCGTTCTCCGAGCTTGCTTCGGCTA 1525
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 CGTCGATGAAACACGCCGATAAAGCGGAAGAGTTTTCGTTCTCCGAGCTTGCTTCGGCTA 1464
Query 1526 CCGGAAACTTCTCTCTAGAGAACAAAATCGGTTCGGGGAGCTTTGGTGTTGTTTACAGAG 1585
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1465 CAGGAAACTTTTCTCTAGAGAACAAAATCGGCTCGGGGAGCTTTGGTGTTGTTTACAGAG 1524
Query 1586 GTAAACTCAATGACGGGAGAGAAGTAGCGATCAAACGCGGGGAAGTAAACGCGAAGATGA 1645
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 GCAAACTCAACGACGGGAGAGAAGTAGCGATCAAACGCGGGGAAGTAAACGCGAAGATGA 1584
Query 1646 AGAAGTTTCAAGAGAAAGAAACCGCGTTTGATTCGGAAATCGCGTTTTTATCGAGGCTTC 1705
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1585 AGAAGTTTCAAGAGAAAGAAACCGCGTTTGATTCAGAAATCGCGTTTCTATCGAGGCTTC 1644
Query 1706 ATCATAAGCATTTGGTGAGACTAGTTGGTTACTGCGAAGAAAGAGAAGAGAAGCTTCTCG 1765
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1645 ATCATAAGCATTTAGTGAGACTAGTTGGTTACTGCGAAGAAAGAGAAGAGAAACTTCTCG 1704
Query 1766 TTTACGATTACATGAAGAATGGTGCGCTTTACGATCATCTACACGACAAGAACAACGTCG 1825
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1705 TTTACGATTACATGAAGAATGGTGCGCTCTACGATCATCTACACGACAAGAACAACGTCG 1764
Query 1826 AAAAACATAGTAGCTTGATCAATTCTTGGAAAATGCGGATCAAAATCGCGTTAGATGCGG 1885
||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1765 AAAAACACAGCAGTTTGATCAATTCTTGGAAAATGCGGATCAAAATCGCGTTAGATGCAG 1824
Query 1886 CTAGAGGAATCGAGTATCTACATAACTACGCAGTGCCACCGATTATTCATAGAGATATTA 1945
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1825 CTAGAGGAATCGAGTATCTACACAATTACGCGGTGCCACCGATTATTCATAGAGATATTA 1884
Query 1946 AGTCGTCTAACATCTTGCTTGACTCTAATTGGGTCGCTAGAGTTTCGGATTTCGGGTTAT 2005
|||| ||||||||||| || ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1885 AGTCATCTAACATCTTACTAGACTCGAATTGGGTCGCTAGAGTTTCAGATTTCGGGTTAT 1944
Query 2006 CATTAATGGGTCCGGTGCTAGGGAAAGATCATAATCCTTATCAACGTCCAACGAAAGCTG 2065
| ||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1945 CGTTAATGGGTCCAGAGTTAGGGAAAGATCATAATCCTTATCAACGTCCAATGAAAGCTG 2004
Query 2066 CGGGGACGGTCGGATATATTGATCCAGAGTATTATAGTCTTAATGTTTTAACGGATAAGA 2125
|||| ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 2005 CGGGAACGGTTGGATATATCGATCCAGAGTATTACAGTCTCAATGTTTTAACGGATAAGA 2064
Query 2126 GCGATGTGTATGGACTAGGAGTGGTGTTGTTAGAATTGTTGACCGGGAAAAGAGCGATAT 2185
|||||||||||||||| ||||||||||||||||||||| |||| || |||||||| ||||
Sbjct 2065 GCGATGTGTATGGACTCGGAGTGGTGTTGTTAGAATTGCTGACAGGAAAAAGAGCTATAT 2124
Query 2186 TTAGGAACAATGGTGATGTGGAGGAGGAGGAAGGGTGTGTTCCGGTGCATTTGGTGGATT 2245
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2125 TTAAGAACAATGGTGATGTGGAGGAGGAGGAAGGGAGTGTTCCGGTGCATTTGGTGGATT 2184
Query 2246 ACTCGGTTCCGGCGATAACGGCTGATGAGTTGAGTACAATTTTGGATCCGAGAGTTGGAT 2305
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||
Sbjct 2185 ACTCGGTGCCGGCGATATCGGCTGATGAGTTGGGTACAATTTTGGATCCGAGAGTGGGAT 2244
Query 2306 CACCGGAGCTAGGTGAAGGAGATGCGGTGGAGCTGGTGGCTTATACGGCTATGCATTGTG 2365
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2245 CACCTGAGCTAGGGGAAGGAGATGCGGTGGAGCTGGTGGCTTATACGGCGATGCATTGTG 2304
Query 2366 TGAATGCGGAAGGGAGAAACAGGCCGACAATGACGGATATAGTAGGGAATTTGGAGAGAG 2425
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2305 TGAATGCGGAAGGGAGAAATAGGCCGACGATGACGGATATAGTAGGGAATTTGGAGAGAG 2364
Query 2426 CATTGGATTTGTGTGGGGATAGTCATGGGAGTATCTCTAGTGGCATTTGTTCTATTGTCT 2485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2365 CATTGGATTTGTGTGGGGATAGTCATGGGAGTATCTCTAGTGGCATTTGTTCTATTGTCT 2424
Query 2486 CTGATTGAGAGATTAAATTCAAACAAATT 2514
||||||||||||||| ||||||| |||||
Sbjct 2425 CTGATTGAGAGATTATATTCAAAAAAATT 2453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102043766355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5