BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55960.1
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938543 jgi|Araly1|938543|scaffold_502734.1 1502 0.0
Ahg335759 jgi|Araly1|335759|fgenesh1_pg.C_scaffold_1002324 255 5e-67
> Ahg938543 jgi|Araly1|938543|scaffold_502734.1
Length=955
Score = 1502 bits (813), Expect = 0.0
Identities = 912/959 (95%), Gaps = 9/959 (1%)
Strand=Plus/Plus
Query 122 ttcttctCCGAGACTCTCTTATGGCCGAGTTGACTCAGGCCGATGTTGTATACTCTCCTC 181
||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 3 TTCTTCTCC--GACTCTCTCATGGCCGAGTTGACTCAGGCCGATGTTGTTTACTCTCCTC 60
Query 182 GTTCGTTTCAAGTGTGGAAGACTTTGGTGAACTGGCTCGCTTTTTTCTATCAGATCTTTC 241
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 GTTCCTTTCAAGTGTGGAAGACTTTGGTGAACTGGCTCGCTTTTTTCTATCAGATCTTCC 120
Query 242 TTCAGATCCTTCGTGCCGTTGGTTATCATCCTCTTCTCTCTTCTTCTGCTAAAGCCTCCG 301
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 121 TTCAGATCCTTCGTGCCGTTGGTTACCACCCTCTTCTCTCTTCTTCTGCTAAAGCCTCCG 180
Query 302 CTGATGGTTTTAAACCTTTGCCGGCTATTGAGTTGCTTGATAGGGCTTCCGAATCTCCCA 361
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGATGGTTTCAAACCTTTGCCTGCTATTGAGTTGCTTGATAGGGCTTCCGAATCTCCCA 240
Query 362 CCACCGTTGAAATCGCAGCCACGACGACTTCTGATTCCTGCAGCGATGGTG-C-ACGCAG 419
||||||| || |||||| ||||||||||||| |||| | ||||||| || | ||||||
Sbjct 241 CCACCGTCGATATCGCATCCACGACGACTTCGGATT-C--CAGCGAT--TGCCAACGCAG 295
Query 420 CCGTTTTCAGAGGCTTAAGGTAGTTCTAGACTTGGATGAGACGTTAGTTTGTGCATATGA 479
||| ||||| || || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CCGCTTTCACAGACTCAAAGTAGTTCTAGACTTGGATGAGACGTTAGTTTGTGCATATGA 355
Query 480 GACGTCGAGTTTACCCGCTGCTTTACGCAATCAAGCAATTGAAGCCGGATTAAAGTGGTT 539
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 356 GACGTCGAGTTTACCCGCTGCTTTACGCAATCAAGCTATTGAAGCTGGATTAAAGTGGTT 415
Query 540 TGAGCTGGAGTGCTTATCAACAGACAAGGAATATGATGGGAAGCCTAAGATCAATTATGT 599
|||||||||||||||||||||||||||||| | ||||||||| |||||| ||||||||||
Sbjct 416 TGAGCTGGAGTGCTTATCAACAGACAAGGAGTGTGATGGGAAACCTAAGGTCAATTATGT 475
Query 600 CACGGTGTTTGAGCGTCCTGGATTGCACGAGTTCCTAGAGCAACTCAGCGAGTTTGCAGA 659
|||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 476 CACGGTGTTTGAACGTCCTGGATTGCATGAGTTTTTAGAGAAACTCAGCGAGTTTGCAGA 535
Query 660 TCTTATTCTGTTTACAGCTGGTCTTGAAGGATATGCGAGGCCGCTTGTGGATAGGATAGA 719
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 536 TCTTGTTCTGTTTACAGCTGGTCTTGAAGGATATGCGAGACCGCTTGTGGATAGGATAGA 595
Query 720 TACCAGGAAAGTGCTCACCAACCGACTTTATCGACCCTCAACAGTCAGCACGCAATACCG 779
||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||
Sbjct 596 TACCAGGAAAGTGCTCAGCAACCGACTTTATCGACCTTCAACAGTCAGCACGCAGTACCG 655
Query 780 AGATCACGTGAAGGATCTGTTAAGCACATCAAAGAATATGTGTAGGACAGTAATTGTTGA 839
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGATCACGTGAAGGATCTATTAAGCACATCAAAGAATATGTGTAGGACAGTAATTGTTGA 715
Query 840 CAACAATCCTTTCAGCTTTTTGTTGCAACCATCAAATGGAATTCCATGTATTGCATTTTC 899
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 716 CAACAATCCTTTCAGCTTTTTATTGCAACCATCAAATGGAATTCCATGTATTGCATTTTC 775
Query 900 CGCAGGGCAGCCAAATGATACTCAGCTCTTGGATGTTATTCTACCGCTTCTGAAGCAACT 959
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 776 CGCAGGGCAGCCAAATGATACTCAGCTCTTGGACGTTATTCTACCGCTTCTGAAGCAACT 835
Query 960 GTCAGAGGAAGACGATGTACGACCGACACTTTATGATCGGTTCCGCATGCCTGAATGGTT 1019
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GTCAGAGGAAGACGACGTACGACCGACACTTTATGATCGGTTCCGCATGCCTGAATGGTT 895
Query 1020 TGAGAAGCAAGGCATACCACCTTCGTGCTGGAAGCCTTAACCGGTTAAGCGGAACGTAA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 896 TGAGAAGCAAGGCATACCACCTTCGTGCTGGAAGCCTTAACCGGTTAAGCGGAAAGTAA 954
> Ahg335759 jgi|Araly1|335759|fgenesh1_pg.C_scaffold_1002324
Length=552
Score = 255 bits (138), Expect = 5e-67
Identities = 188/210 (90%), Gaps = 12/210 (6%)
Strand=Plus/Plus
Query 142 ATGGCCGAGTTGACTCAGGCCGATGTTGTATACTCTCCTCGTTCGTTTCAAGTGTGGAAG 201
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCCGAGTTGACTCATGCCGATGTTGTTTACTCTCCTCGTTCGTTTCAAGTATGGAAG 60
Query 202 ACTTTGGTGAACTGGCTCGCTTTTTTCTATCAGATCTTTCTTCAGATCCTTCGTGCCGTT 261
||| ||||||||||||| |||||||||||||||| || | | || |||| |||
Sbjct 61 ACTCTGGTGAACTGGCTTGCTTTTTTCTATCAGA----TC--C---T--TT-GTGCAGTT 108
Query 262 GGTTATCATCCTCTTCTCTCTTCTTCTGCTAAAGCCTCCGCTGATGGTTTTAAACCTTTG 321
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 109 GGTTACCATCCTCTTCTCTCTTCTTCTGCTAAAGCCTCCGCTGATGGGTTCAAACCTTTG 168
Query 322 CCGGCTATTGAGTTGCTTGATAGGGCTTCC 351
|| |||||||||||||||||||||||||||
Sbjct 169 CCTGCTATTGAGTTGCTTGATAGGGCTTCC 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52297906385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5