BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55970.1
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938544 jgi|Araly1|938544|scaffold_502735.1 1836 0.0
Ahg487361 jgi|Araly1|487361|fgenesh2_kg.6__495__AT5G05600.1 257 1e-67
> Ahg938544 jgi|Araly1|938544|scaffold_502735.1
Length=1132
Score = 1836 bits (994), Expect = 0.0
Identities = 1086/1131 (96%), Gaps = 3/1131 (0%)
Strand=Plus/Plus
Query 40 CTTTTAAAAGTAACCAACGCCATGAATATCTTCCAAGACTGGCCTGAGCCTATAGTCCGT 99
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTTT-AAAGTAACCAAAGCCATGAATATCTTCCAAGACTGGCCTGAGCCTATAGTCCGT 59
Query 100 GTCCAATCCTTATCTGAAAGCAACCTCGGAGCCATACCAAATCGCTACGTCAAGCCTCTA 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTCCAATCCTTATCTGAAAGCAACCTCGGAGCCATACCAAATCGCTACGTCAAGCCTCTA 119
Query 160 TCTCAGCGTCCAAACATAACCCCTCACAACAAACACAACCCTCAGACCACCACCATCCCC 219
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 120 TCTCAGCGTCCAAACATAACCACTCACAACAAACACAACCCTCACACCACCACCATCCCC 179
Query 220 ATCATTGACTTAGGTCGCCTATACACGGACGACCTAACTCTACAAGCCAAAACGCTTGAT 279
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 ATCATTGACTTAGGTCGCCTATACACAGACGACCTAACTCTACAAGCCAAAACGCTTGAT 239
Query 280 GAAATCTCAAAGGCTTGTAGAGAATTGGGATTTTTCCAAGTGGTGAACCACGGGATGAGT 339
|| |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 240 GAGATCTCAAAGGCTTGTAGAGAATGGGGATTTTTCCAAGTTGTGAACCATGGGATGAGT 299
Query 340 CCTCAGCTCATGGACCAAGCTAAAGCAACATGGAGAGAATTCTTTAATCTCCCCATGGAA 399
||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 300 CCTCAACTCATGGACCAAGCTAAAGCAACATGGAGAGAATTCTTTCATCTTCCCATGGAT 359
Query 400 CTCAAAAATATGCATGCTAATTCGCCGAAAACTTACGAGGGATATGGAAGCCGACTAGGC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCAAAAATATGCATGCTAATTCGCCGAAAACTTACGAGGGATATGGAAGCCGACTAGGC 419
Query 460 GTAGAAAAGGGTGCTATTCTTGATTGGAGCGACTACTATTATCTCCATTACCAGCCTTCG 519
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 420 GTAGAAAAGGGTGCTATTCTTGATTGGAGCGACTACTATTATCTTCATTACCAACCTTCG 479
Query 520 TCTTTGAAGGATTACACCAAGTGGCCTTCCTTGCCTCTTCATTGCCGAGAAATATTGGAG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTTTGAAGGATTACACCAAGTGGCCTTCCTTGCCTCTTCATTGCCGAGAAATATTGGAG 539
Query 580 GATTATTGCAAGGAAATGGTGAAACTATGCGAGAACTTGATGAAAAT-CTTATCCAAAAA 638
||||||||||||||||||||||||||||||||||| || ||||| || || ||| |||||
Sbjct 540 GATTATTGCAAGGAAATGGTGAAACTATGCGAGAAGTTAATGAAGATACT-ATCGAAAAA 598
Query 639 CTTGGGATTACAAGAAGACAGACTTCAAAATGCATTTGGTGGTAAAGAGGAATCAGGTGG 698
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 599 CTTGGGATTACAAGAAGACAGACTTCAAAATGCGTTTGGTGGTAAAGAGGAATCAGGAGG 658
Query 699 ATGTTTAAGGGTTAATTATTACCCAAAATGCCCTCAACCGGAGCTGACTCTCGGTATCTC 758
||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 659 TTGTTTAAGGGTTAATTATTACCCAAAATGCCCTCAGCCGGAGCTGACTCTTGGCATCTC 718
Query 759 TCCGCACTCTGATCCCGGCGGTTTGACCATTCTCTTGCCGGACGAACAAGTCGCCAGTCT 818
||||||||| |||||||| || || |||||||||||||||||||||||||||||| ||||
Sbjct 719 TCCGCACTCCGATCCCGGTGGATTAACCATTCTCTTGCCGGACGAACAAGTCGCCGGTCT 778
Query 819 TCAGGTCCGTGGATCCGACGACGCTTGGATCACAGTCGAACCAGCTCCTCATGCTTTCAT 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCAGGTCCGTGGATCCGACGACGCTTGGATCACAGTCGAACCAGCTCCTCATGCTTTCAT 838
Query 879 CGTTAACATGGGTGACCAAATTCAGATGCTGAGCAATTCAATATACAAAAGCGTAGAACA 938
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGTTAACATTGGTGACCAAATTCAGATGCTGAGCAATTCAATATACAAAAGCGTAGAACA 898
Query 939 CAGAGTGATCGTGAACCCTGAAAATGAGAGGTTGTCATTGGCATTTTTCTACAACCCAAA 998
|||||||||||||| ||||| |||||||||| | || |||||||| ||||||||||||||
Sbjct 899 CAGAGTGATCGTGAGCCCTGCAAATGAGAGGCTATCTTTGGCATTCTTCTACAACCCAAA 958
Query 999 GGGCAATGTTCCTATCGAGCCATTGAAGGAGCTAGTGACCGTAGATTCACCTGCTCTCTA 1058
|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 GGGCAATGTTCCGATTGAGCCATTGAAGGAGATAGTGACCGTAGATTCACCTGCTCTCTA 1018
Query 1059 CTCCTCCACCACATACGATCGTTACCGTCAATTCATTCGTACGCAAGGCCCACGTAGCAA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTCCTCCACCACATACGATCGTTACCGTCAATTCATTCGTACGCAAGGCCCACGTAGCAA 1078
Query 1119 ATGTCATATTGACGAACTTAAATCCCCTCGATAGTGCGTACATTTGATTTG 1169
||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1079 ATGTCATATCGACGAACTTAAATCCCCTCGATAGTGCGTACTTTTTATTTG 1129
> Ahg487361 jgi|Araly1|487361|fgenesh2_kg.6__495__AT5G05600.1
Length=1381
Score = 257 bits (139), Expect = 1e-67
Identities = 461/609 (76%), Gaps = 52/609 (9%)
Strand=Plus/Plus
Query 429 AACTTACGAGGGATATGGAAGCCGACTAGGCGTAGA-AAAGGGTGCTATTCTTGATTGGA 487
||| ||||| || ||||||||| | |||| || || ||| || || | |||||||||||
Sbjct 549 AACCTACGAAGGCTATGGAAGCAGGTTAGGTGTTGAGAAA-GGAGCAAGTCTTGATTGGA 607
Query 488 GCGACTACTA-TTATCTCCAT-TACCAGCCTTCGTC-TTTGAAGGA-TTACACCAAGTGG 543
| || || || || ||| ||| | | || || || |||||| || || || |||||||
Sbjct 608 GTGATTATTACTT-TCTTCATCT-TCTTCC-TCATCATTTGAAAGACTT-CAACAAGTGG 663
Query 544 CCTTCCTTGCCT--CTTCATTGCCGAGAAAT-ATTGGAGGATTATTGC-AAGGAAATGGT 599
||||| || ||| | || | ||||| | | | || || || || || || | ||
Sbjct 664 CCTTCTTTTCCTCCCACCA-T-AAGAGAAGTGA-TCGATGAATACGGCGAA-GAGCTAGT 719
Query 600 GAAACT-A-TGCGAGAACTTGATGAAAATCTTATCCAAAAACTTGGGATTACAAGAAGA- 656
||| || | || ||||| | |||| | ||||| | |||||||||| || |||| ||
Sbjct 720 GAAGCTGAGTGGGAGAA--TCATGAGGGTATTATCGACAAACTTGGGACTAAAAGAGGAT 777
Query 657 CAGACTTCAA-AATGCATTTGGTGGT-AAAGAGGAATCAGGTGG-ATGTTTAAGGGTTAA 713
|| ||||| || |||||||| ||| ||| | || ||| || ||||||||||||||
Sbjct 778 AAG-TTTCAAGAA-GCATTTGGAGGTGAAA-A--CAT-AGG-GGCCTGTTTAAGGGTTAA 830
Query 714 TTATTACCCAAAATGCCCTCAACCGGAGCTGACTCTCGGTATCTCTCCGCACTCTGATCC 773
|||||||||||||||||||| |||||| ||| |||| ||| ||||||| ||||| |||||
Sbjct 831 TTATTACCCAAAATGCCCTCGACCGGAACTGGCTCTTGGTCTCTCTCCACACTCCGATCC 890
Query 774 CGGCGGTTTGACCATTCTCTTGCCGGACGAACAAGTCGCCAGTCTTCAGGTCCGTG--GA 831
|||||| ||||||||||||| |||||||| |||||| | |||| ||||| ||| ||
Sbjct 891 TGGCGGTATGACCATTCTCTTACCGGACGATCAAGTCTTCGGTCTCCAGGTTCGTAAAGA 950
Query 832 TCCGACGACGCTTGGATCACAGTCGAA-CCAGC-TCCTCATGCTTTCATCGTTAACATGG 889
| ||| ||| | ||||||| ||| || || | ||| |||||||||||||| || || |
Sbjct 951 T--GAC-ACG-T-GGATCACCGTC-AAGCCT-CATCCCCATGCTTTCATCGTCAATATTG 1003
Query 890 GTGACCAAATTCAGATGCTGAGCAATTCAATATACAAAAGCGTAGAACACAGAGTGATCG 949
|||| ||||| ||||| || ||||| |||| |||||| || || || || |||||||| |
Sbjct 1004 GTGATCAAATACAGATACTAAGCAACTCAACATACAAGAGTGTGGAGCATAGAGTGATAG 1063
Query 950 TGAACCCTGA-AAATGAGAG-GTTGTCA-TTGGCATTTTTCTACAACCC-AAAGGGCAAT 1005
||||| | || ||| ||||| ||| ||| ||| | || ||||||||||| ||| | | ||
Sbjct 1064 TGAACTCGGACAAA-GAGAGAGTT-TCACTTGCC-TTCTTCTACAACCCTAAAAG-CGAT 1119
Query 1006 GTTCCTATC 1014
|||| |||
Sbjct 1120 ATTCCGATC 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51840823445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5