BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55980.1
Length=2153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486038 jgi|Araly1|486038|fgenesh2_kg.5__2030__AT3G55980.1 3068 0.0
> Ahg486038 jgi|Araly1|486038|fgenesh2_kg.5__2030__AT3G55980.1
Length=2000
Score = 3068 bits (1661), Expect = 0.0
Identities = 1896/2006 (95%), Gaps = 29/2006 (1%)
Strand=Plus/Plus
Query 27 CACCTTTTAAAGAAT-C-CTCCTCAC-ACTCCATTCTTC-TTAAAAAACCCACCACAACA 82
||||||||||||||| | |||||||| |||||||||||| |||||||| || ||| ||||
Sbjct 1 CACCTTTTAAAGAATCCTCTCCTCACAACTCCATTCTTCTTTAAAAAAACC-CCA-AACA 58
Query 83 CAATTCCCACTTGTTTCTTCATCATCACCTACTTCAATCAAAAAACATTCCAACTTTCTT 142
|| ||||||||||||||||| ||||| | ||| | | |||||||||||||
Sbjct 59 CATTTCCCACTTGTTTCTTC--CATCA---A----AAT-----AGC-TTCCAACTTTCTT 103
Query 143 CTCAATTTCATTCCAGGATAGTATTATGTGCAGTGGACCAAAGAGCAATCTCTGCTCTTC 202
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 104 CTCAATTTCATTTCAGGATAATATTATGTGCAGTGGACCAAAGAGCAATCTCTGCTCTTC 163
Query 203 AAGAACCTTAACAGAAATCGAATCAAGGCAAAAGGAAGAAGAAACAATGCTTCTCCTCGA 262
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 164 AAGAACCTTAACAGAAATCGAATCAAGGCAAAAGGAAGAAGAAACAATGGTTCTCCTCGA 223
Query 263 ATTCGCTGCTTGTGATGATCTTGACTCGTTCAAGAGAGAGGTTGAAGAGAAAGGGCTTGA 322
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 224 ATTCGCCGCTTGTGATGATCTTGACTCGTTCAAGAGAGAGGTTGAAGAGAAGGGGCTTGA 283
Query 323 TTTGGATGAGTCAGGGTTATGGTATTGCAGACGTGTCGGTTCTAAGAAGATGGGTCTTGA 382
| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 284 TCTGGATGAGCCAGGGTTATGGTATTGCAGACGGGTCGGGTCTAAGAAGATGGGTTTTGA 343
Query 383 AGAAAGAACACCTTTAATGGTTGCAGCTATGTATGGAAGCATAAAGGTTTTGACTTTCAT 442
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AGAAAGAACACCTCTAATGGTTGCAGCTATGTATGGAAGCATAAAGGTTTTGACTTTCAT 403
Query 443 CGTTTCCACTGGAAAATCTGATGTGAACAGAGCTTGTGGTGAAGAGAGAGTTACTCCGCT 502
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 404 CATTTCCACTGGAAAATCTGATGTGAACAGAGCTTGTGGTGAAGAGAGAGTCACTGCGCT 463
Query 503 TCACTGTGCTGTTGCTGGCTGTTCTGTGAATATGATTGAAGTCATCAATGTCTTGCTTGA 562
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 464 TCACTGTGCTGTTGCTGGTTGTTCTGTGAATATGATTGAAGTCATCACTGTCTTGCTTGA 523
Query 563 TGCTTCTGCTTTGGTTAACTCTGTTGATGCTAATGGGAATCAACCTTTGGATGTGTTTGT 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TGCTTCTGCTTTGGTTAACTCTGTTGATGCTAATGGGAATCAACCTTTGGATGTGTTTGT 583
Query 623 TCGAGTTTCGAGGTTTGTGGCTAGTCCGAGGAGGAAAGCGGTTGAGTTGTTGCTGAGAGG 682
||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 584 TCGGGTTTCGAGATTCGTGGCTAGTCCGAGGAGGAAGGCGGTTGAGTTGTTGCTGAGAGG 643
Query 683 AGGAGGTGTTGGAGGATTGATCGATGAGGCGGTTGAAGAAGAGATCAAGATTGTCTCTAA 742
||| |||||| | |||||| |||| |||||||||||||||||||||||||| || |||||
Sbjct 644 AGGCGGTGTTAGCGGATTGGTCGACGAGGCGGTTGAAGAAGAGATCAAGATCGTGTCTAA 703
Query 743 GTATCCAGCTGATGCTTCTTTACCGGATATAAACGAAGGGGTTTATGGAAGTGATGAGTT 802
|||||| || |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 704 GTATCCGGCCGATGCTTCTTTACCGGATATTAATGAAGGGGTTTATGGAAGTGATGAGTT 763
Query 803 TAGGATGTATAGCTTTAAGGTTAAGCCATGTTCTAGGGCTTATTCTCATGATTGGACCGA 862
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 764 TAGGATGTATAGCTTTAAGGTTAAGCCATGTTCGAGGGCTTATTCGCACGATTGGACCGA 823
Query 863 GTGTGCTTTTGTTCATCCGGGAGAAAATGCGAGGAGGAGAGATCCGAGGAAGTATCCTTA 922
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 824 GTGTGCTTTTGTTCATCCGGGAGAGAACGCGAGGAGGAGAGATCCGAGGAAGTATCCTTA 883
Query 923 CACTTGTGTCCCCTGTCCCGAGTTCCGTAAAGGATCATGCCCGAAAGGAGATTCTTGCGA 982
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 884 CACTTGTGTCCCCTGTCCCGAGTTCCGTAAAGGGTCATGCCCGAAAGGAGATTCTTGCGA 943
Query 983 GTATGCTCACGGGGTTTTCGAGTCGTGGCTTCACCCCGCGCAGTATAAAACCCGGCTTTG 1042
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 944 GTATGCTCACGGGGTTTTCGAGTCGTGGCTTCACCCGGCGCAGTATAAAACCCGGCTTTG 1003
Query 1043 TAAAGATGAAACGGGTTGTGCAAGGAAAGTTTGTTTCTTTGCTCATAAACGCGAAGAGAT 1102
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1004 TAAAGATGAGACGGGTTGTGCAAGGAAAGTTTGTTTCTTTGCGCATAAACGTGAAGAGAT 1063
Query 1103 GAGACCTGTTAATGCTTCAACTGGCTCTGCCGTGGCTCAGTCTCCGTTTAGCAGCTTGGA 1162
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1064 GAGACCTGTTAATGCATCAACTGGCTCTGCCGTGGCTCAGTCTCCGTTTAGCAGCTTAGA 1123
Query 1163 GATGATGCCAGGGTTGTCTCCTCTTGCTTATTCTTCAGGAGTTTCGACTCCTCCGGTTTC 1222
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1124 GATGATGCCCGGGTTGTCTCCTCTTGCATATTCTTCAGGAGTTTCGACTCCTCCGGTTTC 1183
Query 1223 TCCAATGGCTAATGGTGTTCCTTCCTCTCCAAGAAACGGCGGATCATGGCAGAACAGAGT 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TCCAATGGCTAATGGTGTTCCTTCCTCTCCAAGAAACGGCGGATCATGGCAGAACAGAGT 1243
Query 1283 CAATACCCTTACTCCACCGGCTTTGCAGCTCAATGGTGGAAGCAGATTGAAGTCCACACT 1342
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1244 CAATACCCTTACTCCCCCGGCTTTGCAGCTCAATGGTGGAAGCAGATTGAAGTCGACATT 1303
Query 1343 GAGCGCTAGAGATATCGATATGGAGATGGAGATGGAATTGAGACTCCGCGGTTTTGGCAA 1402
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1304 GAGTGCTAGAGATATCGATATGGAGATGGAGATGGAACTGAGACTCCGCGGTTTTGGCAA 1363
Query 1403 CAATGTGGAAGAGACGTTCGGGTCTTATGTTTCCTCTCCAAGTAGGAATTCTCAAATGGG 1462
|||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||||
Sbjct 1364 CAATGTCGAAGAGACGTTCGGATCTTATGTTTCCTCTCCAGGTAGGAATTCTCAGATGGG 1423
Query 1463 TCAAAACATGAACCAACATTATCCATCTTCCCCGGTGAGACAACCGCCATCTCAACACGG 1522
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 1424 TCAAAACATGAACCAACATTATCCGTCTTCCCCGGTGAGGCAACCGCCATCTCACCACGG 1483
Query 1523 GTTCGAATCTTCAGCAGCTGCAGCGGTTGCAGTGATGAAAGCGAGATCAACCGCCTTTGC 1582
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 1484 GTTCGAATCTTCAGCAGCTGCAGCGGTTGCAGTGATGAAAGCAAGATCATCCGCTTTTGC 1543
Query 1583 GAAACGTAGCTTGAGCTTCAAACCAGCTACTCAAGCAGCACCACAGTCGAATCTCTCGGA 1642
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1544 GAAACGTAGCTTGAGTTTCAAACCGGCTACTCAAGCAGCACCGCAGTCGAATCTCTCGGA 1603
Query 1643 TTGGGGATCTCCAAACGGGAAGCTGGAATGGGGAATGAAAGGAGAAGAGCTGAATAAGAT 1702
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1604 TTGGGGATCTCCAAACGGGAAGCTCGAATGGGGAATGAAAGGAGAAGAGCTGAATAAGAT 1663
Query 1703 GAGAAGAAGTGTTTCCTTTGGAATCCATGGAAACAACAACAATAACGCAGCTAGAGACTA 1762
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1664 GAGAAGAAGCGTTTCCTTTGGAATCCATGGAAACAACAACAATAACGCAGCTAGAGATTA 1723
Query 1763 CAGGGACGAGCCAGATGTGTCATGGGTTAACTCTTTAGTTAAAGACAGTACTGTGGTGTC 1822
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1724 CAGGGACGAGCCAGATGTGTCATGGGTTAACTCTTTGGTTAAAGACAGT---GTGGTGTC 1780
Query 1823 TGAGAGAAGCTTTGGAATGAATGAGAGGGTTCGGATAATGTCGTGGGCTGAGCAAATGTA 1882
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1781 TGAGAGAAGCTTTGGAATGAACGAGAGGGTTCGGATAATGTCGTGGGCTGAGCAAATGTA 1840
Query 1883 CAGAGAGAAGGAGCAGACTGTGGTGTAAACACACACAAAGATGGTTTCTTATATATATTG 1942
||||||||||||||||||||||| |||||||||| ||| ||||||| | ||| || | |
Sbjct 1841 CAGAGAGAAGGAGCAGACTGTGGCATAAACACACAAAAATATGGTTT-T-ATAGAT-T-G 1896
Query 1943 CTTTTGGGCCATCTCTGCAAATTTGATTCTTTAATTTTTGTGACTTTCTTTAGTTGTTA- 2001
|||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1897 CTTTTGTGCCATCTCCGCAAATTTAATTCTTTAATTTTTGTCACTTTCTTTAGTTGTTAG 1956
Query 2002 CTGTTATTAGTAGTATATGGTTTGTT 2027
| ||||||||||||||||||||||||
Sbjct 1957 CGGTTATTAGTAGTATATGGTTTGTT 1982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81017951115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5