BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55990.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938546 jgi|Araly1|938546|scaffold_502737.1 2488 0.0
Ahg483061 jgi|Araly1|483061|fgenesh2_kg.4__2121__AT2G40150.1 819 0.0
> Ahg938546 jgi|Araly1|938546|scaffold_502737.1
Length=1506
Score = 2488 bits (1347), Expect = 0.0
Identities = 1459/1512 (96%), Gaps = 11/1512 (1%)
Strand=Plus/Plus
Query 76 TATATTaaaaaaaCAAACAGATGCAACCTTGGAGAAGAAAATTTCCATTGTTCGAAACAG 135
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATATTAAAAAAAAAAACAGATGCAACCTTGGAGAAGAAAATTTCCATTGTTCGAAACAG 60
Query 136 GAGTTACAATGAAACAGAGGAAGAACAGTAATCTCTCAATCTTCGTCGT-AGTCTTCTCT 194
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 61 GAGTGACAATGAAACAGAGGAAGAACAGTAATCTCTCAATCTTCGTCGTCA-TCTTCTCT 119
Query 195 GTTTTCCTCTTCGGGATCTTCATGTACAATGAAGACGTCAAGTCCATCGCAGAGTTTCCT 254
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 120 GTTTTCCTCTTTGGGATCTTCATGTACAATGAAGACGTCAAATCCATTGCAGAGTTTCCT 179
Query 255 TTCTCCACCTCAAAACCTCACGACGTCCACGACGAAG-CGACACCGATCACAGAGATC-A 312
|||||||||||||||||| ||||||||||||||| || |||||||||| ||||||| | |
Sbjct 180 TTCTCCACCTCAAAACCTAACGACGTCCACGACG-AGACGACACCGATTACAGAGA-CTA 237
Query 313 CAACACTACCGGTTCAAGAGTCGATCAAGAACTCAGACCCAATTCAGGAATC-GATCAAA 371
||||||||||||||||||| | ||||||||||||||||||||||||||||| | | |||
Sbjct 238 CAACACTACCGGTTCAAGAACCTATCAAGAACTCAGACCCAATTCAGGAATCTG-TTAAA 296
Query 372 AACGCAGACTCAGTTCAAGATTCAGTTAAAGACGTAGCAGAACCAGTTCAA-GAGGAGGT 430
| | |||||| || |||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 297 ATCCCAGACTTAGATCAAGATTCAGTTAAAGACGCAGCAGAACCAGTT-AAGGAGGAGGT 355
Query 431 ATCGAAAACAGAGGAAGTTAAAAAGATTGAGCTTTTCGCTGCGACGGAGGATGAAGAAGA 490
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 356 ATCGAAAACAGAGGAAGTGAAAAAGATTGAGCTTTTCGCTGCCACGGAGGATGAAGAAGA 415
Query 491 CGTGGAATTGCCGCCGGAGGAATGCGATTTGTTCACCGGAGAATGGGTTTTTGATAACGA 550
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 416 CGTGGAATTGCCGCCGGAGGAGTGTGATTTGTTCACCGGAGAATGGGTTTTTGATAACGA 475
Query 551 GACGCATCCATTGTATAAAGAGGATCAATGTGAGTTCTTGACGGCGCAAGTCACTTGCAT 610
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 476 GACGCATCCGTTGTATAAAGAGGATCAGTGTGAGTTCTTGACGGCGCAAGTGACTTGCAT 535
Query 611 GAGAAATGGAAGAAGAGATTCTCTGTATCAGAACTGGAGATGGCAACCTAGAGATTGTTC 670
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 536 GAGAAATGGAAGAAGAGATTCTCTGTATCAGAACTGGAGATGGCAACCAAGAGATTGTTC 595
Query 671 TTTACCAAAGTTCAAAGCGAAATTGCTGTTGGAGAAGCTAAGGAACAAGAGAATGATGTT 730
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 596 TTTACCAAAGTTCAAAGCGAAATTGCTGTTGGAGAAGCTAAGGAACAAGCGAATGATGTT 655
Query 731 CGTTGGAGATTCCCTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAGT 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CGTTGGAGATTCCCTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAGT 715
Query 791 GGTTCCTCCCGGTCGAAAAAGCTTGAACAAAACCGGTTCTCTCTCCGTCTTCCGAGTCGA 850
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 716 GGTTCCTCCCGGTCGAAAAAGCTTGAACAAAACCGGTTCTCTTTCCGTTTTCCGAGTTGA 775
Query 851 GGATTATAATGCGACGGTGGAGTTTTATTGGGCACCATTTTTGGTGGAATCGAATTCAGA 910
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 776 GGATTATAATGCGACGGTGGAGTTTTATTGGGCACCATTTTTGGTGGAATCAAATTCAGA 835
Query 911 TGATCCAAATATGCATAGTATACTTAACCGTATAATAATGCCTGAGTCCATTGAAAAGCA 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TGATCCAAATATGCATAGTATACTTAACCGTATAATAATGCCTGAGTCCATTGAAAAGCA 895
Query 971 TGGAGTCAACTGGAAAGGCGTTGACTTTCTTGTTTTCAACACTTACATTTGGTGGATGAA 1030
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 896 TGGAGTCAACTGGAAAGACGTTGACTTCCTTGTTTTCAACACTTACATTTGGTGGATGAA 955
Query 1031 CACATTCGCTATGAAAGTCCTACGAGGATCGTTCGATAAAGGAGACACCGAGTATGAGGA 1090
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 956 CACATTCGCTATGAAAGTCCTACGCGGATCGTTCGATAAAGGGGACACCGAGTATGAGGA 1015
Query 1091 GATCGAACGGCCAGTAGCGTATAGGAGAGTGATGAGGACTTGGGGAGATTGGGTGGAACG 1150
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GATCGAACGGCCAGTAGCTTATAGGAGAGTGATGAGGACTTGGGGAGATTGGGTGGAACG 1075
Query 1151 AAATATTGATCCTCTACGTACCACTGTCTTCTTTGCTAGCATGTCTCCTCTTCACATCAA 1210
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1076 AAATATTGATCCTCTGCGTACCACTGTTTTCTTTGCTAGCATGTCTCCTCTTCACATCAA 1135
Query 1211 GAGCTTGGATTGGGAGAATCCAGATGGGATCAAGTGTGCATTAGAGACGACACCAATCCT 1270
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1136 GAGCTTGGATTGGGAGAATCCAGATGGGATAAAGTGTGCATTAGAGACGACACCAATCCT 1195
Query 1271 AAACATGTCAATGCCATTCAGCGTAGGAACAGACTACAGACTGTTTTCAGTAGCGGAAAA 1330
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1196 AAACATGTCAATGCCATTCAGCGTAGGAACAGACTACAGGCTGTTTTCAGTAGCGGAAAA 1255
Query 1331 CGTCACGCATTCTCTTAATGTTCCGGTTTACTTTCTCAACATTACCAAACTCTCCGAATA 1390
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CGTCACGCATTCTCTTAAAGTTCCGGTTTACTTTCTCAACATTACCAAACTCTCCGAATA 1315
Query 1391 CCGGAAAGATGCTCACACTTCGGTTCACACAATCCGACAAGGCAAAATGCTGACGCCGGA 1450
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1316 CCGGAAAGATGCTCACACTTCGGTTCACACAATCCGGCAAGGCAAAATGCTGACGCCGGA 1375
Query 1451 GCAACAAGCCGATCCCAACACTTACGCCGATTGTATCCATTGGTGTCTTCCCGGTTTACC 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GCAACAAGCCGATCCCAACACTTACGCCGATTGTATCCATTGGTGTCTTCCCGGTTTACC 1435
Query 1511 TGACACGTGGAATGAGTTCCTTTACACACGTATCATTTCCCGTTCGTGACCTACAAAATA 1570
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 1436 TGACACGTGGAATGAGTTCCTTTACACACGTATCATTTCTCGTTCGTGACCTAAAAAA-A 1494
Query 1571 TTTGAAATATCT 1582
||||||||||||
Sbjct 1495 TTTGAAATATCT 1506
> Ahg483061 jgi|Araly1|483061|fgenesh2_kg.4__2121__AT2G40150.1
Length=1769
Score = 819 bits (443), Expect = 0.0
Identities = 891/1100 (81%), Gaps = 60/1100 (5%)
Strand=Plus/Plus
Query 492 GTGGAATTGCCGCCGGAGGAATGCGATTTGTTCACCGGAGAATGGGTTTTTGATAACGAG 551
||||| |||||||||||||| || ||| | |||||||| |||||||||| || ||| ||
Sbjct 591 GTGGAGTTGCCGCCGGAGGAGTGTGATCTCTTCACCGGTCAATGGGTTTTCGACAACAAG 650
Query 552 ACGCATCCATTGTATAAAGAGGATCAATGTGAGTTCTTGACGGCGCAAGTCACTTGCATG 611
|| |||||||||||||||| || | |||||||||||||||| |||||| |||||| |
Sbjct 651 ACATATCCATTGTATAAAGAAGAAGAGTGTGAGTTCTTGACGGAGCAAGTGACTTGCTTA 710
Query 612 AGAAATGGAA-GAAGAGATTCTCTGTATCAGAACTGGAGATGGCAACCTAGAGATTGTTC 670
||||| |||| ||| ||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 711 AGAAACGGAAGGAA-AGATTCTCTGTTTCAGAATTGGAGATGGCAACCTAGAGACTGTTC 769
Query 671 TTTACCAAAGTTCAAAGCGAAATTGCTGTTGGAGAAGCTAAGGAACAAGAGAATGATGTT 730
||||||||| |||||||||| || || | |||||||| |||||||||||| |||||||
Sbjct 770 TTTACCAAAATTCAAAGCGAGGGTGTTGCTAGAGAAGCTGAGGAACAAGAGATTGATGTT 829
Query 731 CGTTGGAGATTCCCTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAGT 790
||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGTTGGTGACTCGTTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAGC 889
Query 791 GGTTCCTCCCGGTCGAAAAAGCTTGAACAAAACCGGTTCTCTCTCCGTCTTCCGAGT-CG 849
| ||||||||||| |||| ||||| ||| | |||||||||||| | || ||| | | |
Sbjct 890 GATTCCTCCCGGTAGAAAGAGCTTAAACCAGACCGGTTCTCTCACTGTTTTCAAAATTC- 948
Query 850 AGGATTATAATGCGACGGTGGAGTTTTATTGGGCACCATTTTTGGTGGAATCGAATTCAG 909
|||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 949 AGGACTATAACGCGACGGTGGAGTTTTATTGGGCGCCATTTTTGGTAGAATCAAATTCAG 1008
Query 910 ATGATCC-A-AATATGCATAGTATACTTAACCGTATAATAATGCCTGAGTCCATTGA-AA 966
| ||||| | || | ||| |||||| | |||||||||||||||| ||||| || || ||
Sbjct 1009 ACGATCCGAGAA-A-GCACAGTATAATCGACCGTATAATAATGCCAGAGTCTATCGAGAA 1066
Query 967 AGCATGGAGTCAACTGGAAAGGCGTTGACTTTCTTGTTTTCAACACTTACATTTGGTGGA 1026
| |||||||||||||||| ||| |||||||||||||| ||||| | |||||| |||||||
Sbjct 1067 A-CATGGAGTCAACTGGATAGGTGTTGACTTTCTTGTCTTCAATAGTTACATCTGGTGGA 1125
Query 1027 TGAACACAT-TCGCTATGAAAGTCCTACGAGGATCGTTCGATAAAGGAGACACCGAGTAT 1085
||||||| | || | || ||||| ||||| |||||||||||| | || ||||| ||||||
Sbjct 1126 TGAACAC-TGTCTCCATCAAAGTTCTACGTGGATCGTTCGATGATGGGGACACAGAGTAT 1184
Query 1086 GAGGAGATCGAACGGCCAGTAGCGTAT-AGGAG-AGTGATGAGGAC-TTGGGGAGATTGG 1142
|| |||||| |||||||| | ||||| || || | || ||||||| ||||| |||||||
Sbjct 1185 GATGAGATCAAACGGCCAATGGCGTACGAG-AGGA-TGTTGAGGACATTGGG-AGATTGG 1241
Query 1143 GTGGAACGA-AATATTGATCCTCTACGTACCACTGTCTTCTT--TGCTAGCATGTCTCCT 1199
||| ||| | || |||||||||||| |||| ||||| ||||| || ||||||||||||
Sbjct 1242 GTG-AACCATAACATTGATCCTCTAAGTACAACTGTTTTCTTCATG--AGCATGTCTCCT 1298
Query 1200 CTTCACATCAAGAGCTTGGATTGGGAGAATCCAGATGGG-ATCAA-GTGTGCATTAGAGA 1257
||||||||||||||||| |||||||| |||||||| ||| || || |||||| |||||||
Sbjct 1299 CTTCACATCAAGAGCTTAGATTGGGATAATCCAGA-GGGTAT-AATGTGTGCTTTAGAGA 1356
Query 1258 CGACACCAATCCTAAACATGTC----AA--TG----C---C-AT----T-----CAGCG- 1293
| ||||||||| |||||||||| || || | | || | | |||
Sbjct 1357 CAACACCAATCTTAAACATGTCTTTCAACGTGGGGACGAACTATAGGCTGTTTTCCGCGG 1416
Query 1294 TAGGAACAGACTACAGACTGTTTTCAGTAGCGGAAAACGTCACGCATTCTCTTAATGTTC 1353
| ||||| ||||| || |||||||| || | ||||||||| ||||| ||||| || ||||
Sbjct 1417 TGGGAACGGACTATAGGCTGTTTTCGGTGGTGGAAAACGTTACGCAGTCTCTCAAAGTTC 1476
Query 1354 CGGTTTACTTTC-TCAACATTACCAAACTCTCCGAATACCGGAAAGATGCTCACACTTCG 1412
| || | |||| ||||||| || | | || || || || |||||||| || |||||
Sbjct 1477 CTATTCA-TTTCCTCAACATCACTGCATTGTCTGAGTATCGTAAAGATGCACATACTTCA 1535
Query 1413 GTTCACACAATCC-GACAAGGCAAAATGCTGACGCCGGAGCAACAAGCCGATCCCAACAC 1471
||| |||| ||| | ||||||||| ||||||| | |||||||||||| ||||| ||
Sbjct 1536 GTTTACACGATCAAG-CAAGGCAAATTGCTGACTCGGGAGCAACAAGCTGATCCGGCCAA 1594
Query 1472 TTACGCCGATTGTATCCATTGGTGTCTTCCC-GGT-TTACCTGACACGTGGAATGAGTTC 1529
|| || ||||| || || ||||| ||| || || || ||||| || |||||||||||
Sbjct 1595 TTTTGCTGATTGCATACACTGGTG-CTTACCAGGCCTT-CCTGATACTTGGAATGAGTTT 1652
Query 1530 CTTTACACACGTATCATTTC 1549
|| || |||| ||| |||||
Sbjct 1653 CTCTATACACATATTATTTC 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5