BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56000.1
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938547 jgi|Araly1|938547|scaffold_502738.1 2440 0.0
> Ahg938547 jgi|Araly1|938547|scaffold_502738.1
Length=1628
Score = 2440 bits (1321), Expect = 0.0
Identities = 1515/1609 (94%), Gaps = 11/1609 (1%)
Strand=Plus/Plus
Query 91 GTGGGGTCAAAAGTTATCTGTAATGGCGACATTGTCTGATGGATTATTTGATGACAT-GA 149
||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1 GTGGGGTCAAAAG-TATCTGTAATGGCGACATTGTCTGATGGATTATTCAACGACATGGA 59
Query 150 GCGTGTTGGGAGTGATCGGATATGTACTTGAGCAAACCAGGTTCATCTTTCTCGTGCCGA 209
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 60 -TGTGTTGGGAGTGATCGGATATGTACTGGAGCAAACCAGGTTCATCTTCCTCGTACCGA 118
Query 210 TTCTGAAACGTCTTGTGAATCTCTGTCAGGTTGTTTCGGTGTTGTTGTTCGTAGATGCAG 269
|||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 119 TTCTGAAACGTCTTGTGAATCTATGTCAGGTTATTTCGGTGTTGTTGTTCATAGATGCAG 178
Query 270 CTTATATGGCTATAGTTGTAGCCATTGTCAAATTACTTGGACGAACACCACAGAAAGTTC 329
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 179 CTTATATGGCTATAGTTGTAGCCATTGTCAAATTACGTGGACGAACACCAGAGAAAGTTC 238
Query 330 TCAAATGGGAAAGCTTCAAGAGCGATGATATCGAGCTAGCTCCCTCCAGCAATCATCCCA 389
|||||||||||||||| |||| |||||||||||||| ||||| ||||| |||||||| |
Sbjct 239 TCAAATGGGAAAGCTTTAAGAATGATGATATCGAGCTTGCTCCTTCCAGTAATCATCCAA 298
Query 390 TGGTTCTCATTCAAATCCCAATCT-TCAACGAGAAAGAGGTATGCCAACTTTCTATAGGA 448
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 299 TGGTTCTCATTCAAATCCCAATCTAT-AACGAGAAAGAGGTATGCCAACTTTCTATAGGA 357
Query 449 GCAGCTTGTAAGCTATCATGGCCACTGGATCGGATGATCATTCAAGTGCTTGACGATTCA 508
|| | ||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 358 GCGGTTTGCAAGCTATCATGGCCACTGGATCGGATGATCATTCAAGTTCTCGACGATTCG 417
Query 509 ACCGAAGAAGAAAGTCAGAAACTGGTGAGATTGGAGTGTAAGAAATGGGAGAGCGAAGGT 568
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 418 ACCGAAGAAGAAAGTCAGAAACTAGTTAGATTGGAGTGTAAGAAATGGGAGAGCGAAGGT 477
Query 569 ATAACCATAAAGTCGGAAGTTAGAGGCGGTTTTAGAGAGGGTTTCAAAGCAGGAGCTCTC 628
||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||
Sbjct 478 ATAACCATAAAGTCGGAGGTTAGAGGCGG---TAGAGACGGTTTCAAAGCAGGAGCTCTC 534
Query 629 ACTGCAGGAATGAAGCATAGTTACGTGGATGAATACAAGTGCGAGTTTGTTGTTATATTT 688
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 535 ACTGCAGGAATGAAGCATGGTTATGTGGATGAATACAAGTGCGAGTTTGTTGTTATATTT 594
Query 689 GATGCTGATTTTCAGCCTGAACCTGATTTTCTTGAACGTACTGTTCCTTTCCTTGTCCAT 748
||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 595 GATGCTGATTTTCAGCCTGAACCAGATTTTCTTGAACGTACTATTCCTTTTCTTGTCCAC 654
Query 749 AACCCTGAGATAGCTCTTGTACAAGCCGGCTGGAAATATGGGAATGCTGATGAGTGTTGT 808
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 655 AACCCTGAGATAGCTCTTGTACAAGCCGGTTGGAAATACGGGAATGCCGATGAGTGTTGT 714
Query 809 ATGACAAGAATACAAGAGATGTCTCTTAACTACCATTTTGCAGTGGAGCAAAAGTCTGGA 868
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 715 ATGACAAGAATACAAGAGATGTCTCTTAATTACCATTTTGCAGTGGAGCAAAAGTCTGGA 774
Query 869 TCCTCCATACTTGGTTTCTTTGGATTCAATGGTACTGCTGGTGTGTGGAGAATTAAAGCT 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCCTCCATACTTGGTTTCTTTGGATTCAATGGTACTGCTGGTGTGTGGAGAATTAAAGCT 834
Query 929 TTGAATGAGGCTGAAGGATGGAAAGACCGCACGATAGTCGAGGACATGGATTTAGCTGTT 988
|||||||||| | ||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 835 CTGAATGAGGCCGGAGGATGGAAGGACCGCACAATTGTCGAGGACATGGATTTAGCAGTT 894
Query 989 AGAGCTTATCTACGCGGCTCGAAGTTTGTGTATGTCGACGATGTTAAGGTGAAAAACGAG 1048
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AGAGCTTATTTACGCGGCTCGAAGTTTGTGTATGTCGACGATGTTAAGGTGAAAAACGAG 954
Query 1049 CTTCCGAGCTCATTTCAAGCATACCGGTTTCAGCAACATCGTTGGTCTTGCGGTCCAGCG 1108
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 955 CTTCCAAGCTCATTTCAAGCATACCGGTATCAGCAACATCGTTGGTCTTGCGGTCCAGCG 1014
Query 1109 AACCTTTTCAAGAAAATTGCAATGGAGATCATCAAAAACCAGAATGTGTCTTTATGGAAG 1168
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1015 AACCTCTTCAAGAAAATTGCAATGGAGATCATTAAAAACCAGAATGTGTCTTTATGGAAG 1074
Query 1169 AAGGTGTATTTGATATACAACTTCTTCTTTTTGAGGAAGATTGTTGTACACATCTTCACA 1228
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AAGGCGTATTTGATATACAACTTCTTCTTTTTGAGGAAGATTGTTGTACACATCTTCACA 1134
Query 1229 TTCGTTTTCTACTGCGTGATTTTGCCAGCTACCGTTATATTCCCGGAGATCGAAGTCCCT 1288
||||| ||||||||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1135 TTCGTCTTCTACTGCCTGCTTTTGCCTGCTACCGTTATATTCCCGGAGATCGAAGTCCCT 1194
Query 1289 AAATGGACAACTATCTACATTCCAGCTACCATCACTATCCTAAACGCTATTGCAACACCT 1348
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1195 AAATGGACAACTATCTACATTCCTGCTACCATCACTATCTTAAACGCTATTGCAACACCT 1254
Query 1349 AAATCATTTTACCTCATACTCTATTGGATCTTATTTGAAAACGTAATGGCGATGCATAGG 1408
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1255 AAATCATTTTATCTCATACTATATTGGATCTTATTTGAGAACGTAATGGCGATGCATAGG 1314
Query 1409 AGTATAGGAACTCTCATTGGATTGCTAGAGACTAGTAGAGTTAAAGAATGGATTGTTACA 1468
|||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1315 AGTAAAGGAACTCTTATTGGACTGCTAGAGACTAGTAGAGTTAAAGAATGGGTTGTTACA 1374
Query 1469 CAAAAACTAGGAGAGAGTAACAATCTCAGGGAAAACCTCATTTTTCCTGATCACTATAGC 1528
|||||||||||||||||||| | ||||||| | |||||||| | ||| |||||||||
Sbjct 1375 CAAAAACTAGGAGAGAGTAATACTCTCAGGCAGAACCTCATCTCCCCT---CACTATAGC 1431
Query 1529 TTCCCCGAGAGACTTCGATGGCGAGAGATAATGGTTGGAATGTATCTCTTCATATGTGGA 1588
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1432 TTCCCTGAAAGACTTCGATGGCGAGAGATAATGGTCGGAATGTATCTCTTCATATGTGGA 1491
Query 1589 TACTATGATTTTGTGTTTGGGAGGACATACCTTTACGTGTATCTTTTCTTGCAGTCCATT 1648
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1492 TACTATGACTTTGTGTTCGGGAGGACATACCTTTATGTGTATCTTTTCTTGCAGTCTATT 1551
Query 1649 GCCTTCTTTGTTGTTGGAGTTGGCTACGTTGGAATGCCGGTTCCAAGTA 1697
|||||||| |||||||||||||||||| |||||||| ||||||| ||||
Sbjct 1552 GCCTTCTTCGTTGTTGGAGTTGGCTACATTGGAATGTCGGTTCCTAGTA 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70009870310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5