BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56010.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938548 jgi|Araly1|938548|scaffold_502739.1 926 0.0
> Ahg938548 jgi|Araly1|938548|scaffold_502739.1
Length=637
Score = 926 bits (501), Expect = 0.0
Identities = 583/621 (94%), Gaps = 11/621 (2%)
Strand=Plus/Plus
Query 82 ATTCACAATGTCCGTCGTTCTCAACGCCGGCT-TCAGTTCTCCGCTTCAAAACAGATCAC 140
|||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct 14 ATTCACAATGTCCGTCGTTCTCAACGCCGGCTAT-AGTTCTCCGCTTCACAACAGATCCC 72
Query 141 ATCATGTTATACAGTTAAAGCCTTCGCCTTTTGCGTCATACATATCTCTAAACAGTTCAA 200
| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 73 AACCTGTTATACCGTTAAAGACTTCGCCTTTTGCGTCATACATATCTCTAAACAGTTCAA 132
Query 201 GAAGGTCACTGTTATGCAAAAGAAGATTGGTTGTATCTTGTTTGGATACAAATGACAATT 260
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 133 GAAGGTCACTGTTAAGCAAAAGAAGATTGGTTGTATCATGTTTGGATACAAATGACAATT 192
Query 261 CTGTCACAACTACATCCGTAGATTCTTCTTCTTCTTCAGATTCTAATAAACCAGTAAGTG 320
|||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 193 CTGTCACAACTACATCCGTAGA---------TTCTTCAGATTCTAATAAACCAGCAAGTG 243
Query 321 AATCAGTTGAATCAAGCAATGGCACTGCCAAAAAAGCACCATTGACAGCACGAGAGAGAC 380
|||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 244 AATCAGTTGAATCAGGCAATGGCTCTGCAAAAAAAGCACCATTGACAGCACGAGAGAGAC 303
Query 381 TAAGAGCGGCTCGTGTTCTTAGCCGATACACTGAAGCAACACCGAAACCGTCAAAACCTA 440
||||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||| |
Sbjct 304 TAAGAGCGGCTCGTGTTCTTAGCCGGTACACGGAAGCAACGCCGAAACCGTTAAAACCCA 363
Query 441 AAATGGGGAGCCAACTTCTTGATGTGCTCAAGGAAAGTGATAAGAAATCAAAGAGGAAAC 500
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AAATGGGAAGCCAACTTCTTGATGTGCTCAAGGAAAGTGATAAGAAATCAAAGAGGAAAC 423
Query 501 CGGGTCTACCCGAAGCACCAACTAACATGCTTGATGATAGCAGGAGAGGGATGCCAAAGA 560
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 424 CGGGTCTACCCGAAGCACCAACCAACATGCTTGATGATAGCAGGAGAGGGATGCCGAAGA 483
Query 561 GCGGTCTTACGTTTGATTTACCGGGAGGCTCGGATATTCTCATCATTGCTTTCTCCTTTG 620
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 484 GCGGCCTTACGTTTGATTTACCGGGAGGCTCAGATATTCTCATCATTGCTTTCTCCTTTG 543
Query 621 TGTTCATAAGCACAGTCATGTTTGCTACTACTTTTCTTGTTTGGAAACTCGGTGCGATAC 680
||||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 544 TGTTCATAAGCACTGTGATGTTTGCTACTACTTTTCTTGTCTGGAAACTCGGAGCAATAC 603
Query 681 ACTTCAACGAATAGTAAAGTT 701
|||||||||||||||||||||
Sbjct 604 ACTTCAACGAATAGTAAAGTT 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5