BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56030.1 Length=1284 Score E Sequences producing significant alignments: (Bits) Value Ahg486042 jgi|Araly1|486042|fgenesh2_kg.5__2034__AT3G56030.1 1646 0.0 > Ahg486042 jgi|Araly1|486042|fgenesh2_kg.5__2034__AT3G56030.1 Length=1165 Score = 1646 bits (891), Expect = 0.0 Identities = 1084/1176 (92%), Gaps = 17/1176 (1%) Strand=Plus/Plus Query 52 GACGATGTCTCTTCTCCGACGATTCGTTAAAGAAGCGAACAATTCCAGATTTCTGCTTCA 111 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct 1 GACGATGTCTCTTCTCCGGCGATTCGTTAAAGAAGCGAACAATTCCAGATTCCTCCTTCA 60 Query 112 ATCAATCTCGGGACGTTCATTCTCCACCGTAAATCCCAATCCAACTGCTTCACCTGGTCG 171 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATCGATCTCGAGACGTTCATTCTCCACCGTAAATCCCAATCCAACTGCTTCACCTGGTCG 120 Query 172 TCGTACTTGCGTCGAATTCGATAACCTCATCTTCAAAGCCGGAAGCTCCGGCGATTTCGA 231 |||||||||||||||||||||| ||||||||| | ||||||||| ||||||||| ||||| Sbjct 121 TCGTACTTGCGTCGAATTCGATCACCTCATCTACGAAGCCGGAAACTCCGGCGACTTCGA 180 Query 232 AGCCGTACGTCGTCTCCTCAACAGCCGCGTCGTAAACGCGTGTTTCAACACGACAGCTAC 291 ||||||||||||||| |||||||||||||| || |||||||||||||||||||| || || Sbjct 181 AGCCGTACGTCGTCTTCTCAACAGCCGCGTTGTTAACGCGTGTTTCAACACGACCGCAAC 240 Query 292 TTTCAAATTCCTAACAAACACAGACTCTTACTCCTCCTCCTTAGAAGATCTCCGCCGTAT 351 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 241 ATTCAAATTCCTAACAAACACAGACTCTTACTCTTCCTCCTTAGAAGATCTCCGCCGCAT 300 Query 352 TTTGCCTCAGACCGACGCCGGCTACACTCGGAAACACTCCTACGAAACTCTCATCGCTCG 411 ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 301 TTTACCTCAGACCGACGCCGGATACACTCGGAAACACGCCTACGAAACTCTCATCGCTCG 360 Query 412 TCTCTGCAAACTCGGCCGGATCGACGACGCTCTGGTCTTGATCAACGATATGGCGATCGG 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 361 TCTCTGCAAACTCGGCCGGATCGACGACGCTCTGGTCTTGATCAACGATATGGCAATCGG 420 Query 472 AGAATTCGGACTCTCAACCTGCGTATTTCATCCGATCTTAAACACGCTCACGAAGAAGAA 531 | |||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||| Sbjct 421 AAAATTCGAACTCTCAACCTCCATATTTCACCCGATCTTAAACACGCTCACGAAGAAGAA 480 Query 532 CAGAAT-CGAAGAAGCTTGGCGCGTGGTGGAATTGATGAGATCTCACGCGATTCCGGTGG 590 || | | |||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 481 CA-AGTTCGAAGAAGCTTGGCGCGTGGCGGAATTGATGAGATCTCACGCGATTCCGATGG 539 Query 591 ACGTGACTTCATACAATTATTTTTTAACTTCGCATTGTTACGACGGTGACGTGGCGGAGG 650 ||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||| Sbjct 540 ACGTGACGTCATATAACTACTTTTTAACTTCGCATTGTTACGACGGTGACGTGGCGGAGG 599 Query 651 CGAGCAGGGTGTTGAGGAAGATGGAGGAAGAGGAGGAAGGAGTTATGTCGCCAGACACGC 710 |||||| |||||||||||||||||| | ||||||| | |||||||||||| ||||||| Sbjct 600 CGAGCAAGGTGTTGAGGAAGATGGA--A-GAGGAGG--G-AGTTATGTCGCCGGACACGC 653 Query 711 GTACTTACGACGCGCTTGTGTTAGGCGCGTGTAAGTCAGGGAGA-GTTGAAGCGGCGATG 769 |||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| Sbjct 654 GTACTTACGACGCGCTTGTGTTAGGCGCGTGTAAATCAGGGA-ATGTTGAAGCGGCGATG 712 Query 770 GCGATTCTGAGGAGGATGGAGGAAGAAGGGTTATCGGTATTGTACGCCACGCATGCGCAC 829 | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 713 GTGATTCTGAGGAGGATGGAGGAAGAAGGGTTATCGGTATTGTACGCCACTCATGCGTAC 772 Query 830 GTTATAGGAGAAATGGTGGAGAGTGGCTATTATGCGCTAAGTGTGGAGTTTGTGATGGCG 889 ||||| ||||| || |||||||||||||||||||||| |||||| |||||||||||| Sbjct 773 GTTATTGGAGAGTTGCTGGAGAGTGGCTATTATGCGCTGTCTGTGGAATTTGTGATGGCG 832 Query 890 TACGCGGGGAAAGATAAGAGATTAGATGAAGAGAATTTGGGAAGTTTGGCTAGTAAGCTT 949 ||||| || |||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 833 TACGCCGGAAAAGATAAGAAATTAGATGAAGAGAATTTGGGAAGTTTAGCTAGTAAGCTT 892 Query 950 ATCAAGAGGAAGAGGTTTAAAGAAGCTAAGATGGTTTTGAAGGAGATGAGTGTTAGAGGA 1009 || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 893 ATTAAGAGGAAGAGGTTTAAAGATGCTAAGTTGGTTTTGAAGGAGATGAGTGTTAGAGGA 952 Query 1010 TTGAGAATGGGTGATGCTTTGCGTGAATTTCATGAGAAAAATGTGTTACAATCATGATTT 1069 ||||||||||| ||||||| ||||||||||||| | ||||||||| ||||||||||| Sbjct 953 TTGAGAATGGGAAATGCTTTATGTGAATTTCATGATACCAATGTGTTAAAATCATGATTT 1012 Query 1070 TGATTCTAAGAATGAGA-TCACCATTGTTACA--GACATAAAAATGAACTTTGAAGGAGG 1126 |||| ||||||| |||| |||||||||||||| || |||||||| |||||||||||||| Sbjct 1013 TGATCCTAAGAAGGAGAATCACCATTGTTACAAAGAGATAAAAATCAACTTTGAAGGAGG 1072 Query 1127 TAAGTGTAAA-CAGTTAGCTTCTCTGCGtttttttttttCACATGCAGAGtttttttGTT 1185 | |||||||| ||||||||||||||||| ||||||| ||||||||| |||| || ||| Sbjct 1073 TTAGTGTAAAACAGTTAGCTTCTCTGCGATTTTTTT---CACATGCAGTGTTTGTTGGTT 1129 Query 1186 TCCATTAAGAATGTTTTGACTTGTGGCTTCAAGTTC 1221 |||| ||||||||| |||||| |||||||||||||| Sbjct 1130 TCCAATAAGAATGTATTGACTCGTGGCTTCAAGTTC 1165 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47996752503 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5