BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56030.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486042 jgi|Araly1|486042|fgenesh2_kg.5__2034__AT3G56030.1 1646 0.0
> Ahg486042 jgi|Araly1|486042|fgenesh2_kg.5__2034__AT3G56030.1
Length=1165
Score = 1646 bits (891), Expect = 0.0
Identities = 1084/1176 (92%), Gaps = 17/1176 (1%)
Strand=Plus/Plus
Query 52 GACGATGTCTCTTCTCCGACGATTCGTTAAAGAAGCGAACAATTCCAGATTTCTGCTTCA 111
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 1 GACGATGTCTCTTCTCCGGCGATTCGTTAAAGAAGCGAACAATTCCAGATTCCTCCTTCA 60
Query 112 ATCAATCTCGGGACGTTCATTCTCCACCGTAAATCCCAATCCAACTGCTTCACCTGGTCG 171
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCGATCTCGAGACGTTCATTCTCCACCGTAAATCCCAATCCAACTGCTTCACCTGGTCG 120
Query 172 TCGTACTTGCGTCGAATTCGATAACCTCATCTTCAAAGCCGGAAGCTCCGGCGATTTCGA 231
|||||||||||||||||||||| ||||||||| | ||||||||| ||||||||| |||||
Sbjct 121 TCGTACTTGCGTCGAATTCGATCACCTCATCTACGAAGCCGGAAACTCCGGCGACTTCGA 180
Query 232 AGCCGTACGTCGTCTCCTCAACAGCCGCGTCGTAAACGCGTGTTTCAACACGACAGCTAC 291
||||||||||||||| |||||||||||||| || |||||||||||||||||||| || ||
Sbjct 181 AGCCGTACGTCGTCTTCTCAACAGCCGCGTTGTTAACGCGTGTTTCAACACGACCGCAAC 240
Query 292 TTTCAAATTCCTAACAAACACAGACTCTTACTCCTCCTCCTTAGAAGATCTCCGCCGTAT 351
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 241 ATTCAAATTCCTAACAAACACAGACTCTTACTCTTCCTCCTTAGAAGATCTCCGCCGCAT 300
Query 352 TTTGCCTCAGACCGACGCCGGCTACACTCGGAAACACTCCTACGAAACTCTCATCGCTCG 411
||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 301 TTTACCTCAGACCGACGCCGGATACACTCGGAAACACGCCTACGAAACTCTCATCGCTCG 360
Query 412 TCTCTGCAAACTCGGCCGGATCGACGACGCTCTGGTCTTGATCAACGATATGGCGATCGG 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 TCTCTGCAAACTCGGCCGGATCGACGACGCTCTGGTCTTGATCAACGATATGGCAATCGG 420
Query 472 AGAATTCGGACTCTCAACCTGCGTATTTCATCCGATCTTAAACACGCTCACGAAGAAGAA 531
| |||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 421 AAAATTCGAACTCTCAACCTCCATATTTCACCCGATCTTAAACACGCTCACGAAGAAGAA 480
Query 532 CAGAAT-CGAAGAAGCTTGGCGCGTGGTGGAATTGATGAGATCTCACGCGATTCCGGTGG 590
|| | | |||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 481 CA-AGTTCGAAGAAGCTTGGCGCGTGGCGGAATTGATGAGATCTCACGCGATTCCGATGG 539
Query 591 ACGTGACTTCATACAATTATTTTTTAACTTCGCATTGTTACGACGGTGACGTGGCGGAGG 650
||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACGTGACGTCATATAACTACTTTTTAACTTCGCATTGTTACGACGGTGACGTGGCGGAGG 599
Query 651 CGAGCAGGGTGTTGAGGAAGATGGAGGAAGAGGAGGAAGGAGTTATGTCGCCAGACACGC 710
|||||| |||||||||||||||||| | ||||||| | |||||||||||| |||||||
Sbjct 600 CGAGCAAGGTGTTGAGGAAGATGGA--A-GAGGAGG--G-AGTTATGTCGCCGGACACGC 653
Query 711 GTACTTACGACGCGCTTGTGTTAGGCGCGTGTAAGTCAGGGAGA-GTTGAAGCGGCGATG 769
|||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||
Sbjct 654 GTACTTACGACGCGCTTGTGTTAGGCGCGTGTAAATCAGGGA-ATGTTGAAGCGGCGATG 712
Query 770 GCGATTCTGAGGAGGATGGAGGAAGAAGGGTTATCGGTATTGTACGCCACGCATGCGCAC 829
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 713 GTGATTCTGAGGAGGATGGAGGAAGAAGGGTTATCGGTATTGTACGCCACTCATGCGTAC 772
Query 830 GTTATAGGAGAAATGGTGGAGAGTGGCTATTATGCGCTAAGTGTGGAGTTTGTGATGGCG 889
||||| ||||| || |||||||||||||||||||||| |||||| ||||||||||||
Sbjct 773 GTTATTGGAGAGTTGCTGGAGAGTGGCTATTATGCGCTGTCTGTGGAATTTGTGATGGCG 832
Query 890 TACGCGGGGAAAGATAAGAGATTAGATGAAGAGAATTTGGGAAGTTTGGCTAGTAAGCTT 949
||||| || |||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 833 TACGCCGGAAAAGATAAGAAATTAGATGAAGAGAATTTGGGAAGTTTAGCTAGTAAGCTT 892
Query 950 ATCAAGAGGAAGAGGTTTAAAGAAGCTAAGATGGTTTTGAAGGAGATGAGTGTTAGAGGA 1009
|| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 893 ATTAAGAGGAAGAGGTTTAAAGATGCTAAGTTGGTTTTGAAGGAGATGAGTGTTAGAGGA 952
Query 1010 TTGAGAATGGGTGATGCTTTGCGTGAATTTCATGAGAAAAATGTGTTACAATCATGATTT 1069
||||||||||| ||||||| ||||||||||||| | ||||||||| |||||||||||
Sbjct 953 TTGAGAATGGGAAATGCTTTATGTGAATTTCATGATACCAATGTGTTAAAATCATGATTT 1012
Query 1070 TGATTCTAAGAATGAGA-TCACCATTGTTACA--GACATAAAAATGAACTTTGAAGGAGG 1126
|||| ||||||| |||| |||||||||||||| || |||||||| ||||||||||||||
Sbjct 1013 TGATCCTAAGAAGGAGAATCACCATTGTTACAAAGAGATAAAAATCAACTTTGAAGGAGG 1072
Query 1127 TAAGTGTAAA-CAGTTAGCTTCTCTGCGtttttttttttCACATGCAGAGtttttttGTT 1185
| |||||||| ||||||||||||||||| ||||||| ||||||||| |||| || |||
Sbjct 1073 TTAGTGTAAAACAGTTAGCTTCTCTGCGATTTTTTT---CACATGCAGTGTTTGTTGGTT 1129
Query 1186 TCCATTAAGAATGTTTTGACTTGTGGCTTCAAGTTC 1221
|||| ||||||||| |||||| ||||||||||||||
Sbjct 1130 TCCAATAAGAATGTATTGACTCGTGGCTTCAAGTTC 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5