BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56050.1
Length=2104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486045 jgi|Araly1|486045|fgenesh2_kg.5__2037__AT3G56050.2 2739 0.0
Ahg321719 jgi|Araly1|321719|fgenesh1_pm.C_scaffold_4001776 785 0.0
Ahg934822 jgi|Araly1|934822|scaffold_402810.1 656 0.0
> Ahg486045 jgi|Araly1|486045|fgenesh2_kg.5__2037__AT3G56050.2
Length=1900
Score = 2739 bits (1483), Expect = 0.0
Identities = 1715/1826 (94%), Gaps = 20/1826 (1%)
Strand=Plus/Plus
Query 163 AGATCGAGACTTGGATTTATCAGCTTCTCCGTGCTCCTTTAGCTTCTGCTCGGTTTTGtt 222
|||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||
Sbjct 39 AGATCGAGACTTGGATTTCTCAGCTTTTTCGTGCTGCTTTAGCTTCTGCTCGGTTTTG-- 96
Query 223 ttttttAGTCTGACGATGAGTAACAACTGGAAATCCGTTCGATTAAGGCTTCAAAATCGT 282
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 97 -TTTTTAGTCTGACGATGAGTAACAACTGGAAATTCGTTCGATTAAGGCTTCAAAACCGT 155
Query 283 ACTCTCGTGTTTCTTCTGGTGATTTTGAGCTTCGGTTCTTGCTATTCGTTGAAATCTCAA 342
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 156 ACTCTCGTGTTTCTTCTGGTGATTTTGAGCTTCGGTTCTTGCTATTCGTTTAAATCTCAA 215
Query 343 GGTGATGGTTTTCTGGAATCCGTGACGAAAGATCTATGGTCAGATATAGATGCTGAGGAT 402
|||| | |||||||||||| |||||||| ||||||| |||||||| |||| | ||||||
Sbjct 216 GGTGGTCGTTTTCTGGAATTTGTGACGAAGGATCTATCGTCAGATACAGATTCCGAGGAT 275
Query 403 TTGAGAGCAGTTGGTTTTCACAGGAAATTACTTGGCCGTTTTCGTAACCCGTACACCCAT 462
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 276 TTGAGAGCGGTTGGTTTTCACAGGAAATTACTTGGCCGTTTTCGTAACCCATATACCCAT 335
Query 463 TTGAATGCGTTCAGGGACCGCCCTGTGGCAAGAGCTACACCTCCGTCATCTTCGGTTTCT 522
|||| | ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 336 TTGACTACGTTCAGAGACCGGCCTGTGGCAAGAGCTACACCTCCGTCTTCTTCGGTTTCT 395
Query 523 ACGAGACCTGATGCCAAAAGATCCTCT-ACATTGCC-TCCGCCACAAAAAAGTCCTCCTG 580
|||||||| ||||||||| | ||| | |||||||| ||| |||||||||||||| ||||
Sbjct 396 CCGAGACCTAATGCCAAAAAAACCT-TAACATTGCCTTCC-CCACAAAAAAGTCCACCTG 453
Query 581 CGCAACATGTTTCTGCTCCACCTCCT-TTTGTGCACCATGTGACTTTACCTAGTCTAACA 639
||| |||||||||||||||||||||| ||| |||||| ||||| ||| |||||||||| |
Sbjct 454 CGCGACATGTTTCTGCTCCACCTCCTCTTT-TGCACCCTGTGAATTTTCCTAGTCTAAGA 512
Query 640 AGCAGCTCCAAAACTTCTTCAAACAGCACAATTCCTATAGTGGCTGGCTGCATA-GCGGG 698
|| |||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 513 AGAAGCTCCAAAACTTCTTCAAACAGCACAATTCCTATAGTGGCTGGCTGCGTAGGC-GG 571
Query 699 TGCTGTGTTTATCCTCCTTTTAGCTACTGGTGT-TTTCTTTTTTAAAAGTAAGGCTGGGA 757
||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |
Sbjct 572 TGCTGTGTTTATCCTCCTTTTAGCTACTGGTGTCTTT-TTTTTCAAAAGTAAGGCTGGAA 630
Query 758 AATCTGTGAATCCCTGGCGTACAGGTCTTAGTGGACAACTTCAGAAAGTGTTCATAACTG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AATCTGTGAATCCCTGGCGTACAGGTCTTAGTGGACAACTTCAGAAAGTGTTCATAACTG 690
Query 818 GTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTGCCTGTGAAGATTTTAGTAATGTCA 877
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 691 GTGTCCCCAAACTCAAAAGATCTGAGATTGAAGCTGCCTGTGAAGACTTCAGTAATGTTA 750
Query 878 TTGGGTCTTGCCCCATTGGTACATTGTTCAAAGGGACGCTATCAAGTGGGGTGGAGATAG 937
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TTGGGTCTTGTCCCATTGGTACATTGTTCAAAGGGACGCTATCAAGTGGGGTGGAGATAG 810
Query 938 CTGTGGCTTCTGTTGCTACTGCGTCTGCCAAAGAATGGACAAATAATATAGAAATGCAGT 997
|||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 811 CTGTGGCTTCTGTTGCCACTGCCTCTGCCAAGGAATGGACAAATAACATAGAAATGCAGT 870
Query 998 TCAGAAAGAAGATCGAAATGTTATCCAAGATAAACCACAAGAATTTTGTCAACCTTCTTG 1057
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 871 TCAGAAAGAAGATTGAGATGTTATCCAAGATAAACCACAAAAATTTTGTCAACCTTCTTG 930
Query 1058 GTTACTGTGAAGAAGAAGAACCTTTCACTAGGATCTTGGTCTTTGAATATGCATCAAACG 1117
|||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |
Sbjct 931 GTTACTGTGAAGAAGATGAGCCTTTCACTAGGATCTTGGTGTTTGAATATGCATCAAATG 990
Query 1118 GAACAGTCTTTGAACATTTACACTATAAAGAATCAGAACACTTGGACTGGGTAATGCGGC 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 GAACAGTCTTTGAACATTTACACTATAAAGAATCAGAACACTTGGACTGGGTAATGCGGC 1050
Query 1178 TAAGAATAGCAATGGGCATAGCTTATTGCCTTGACCATATGCACGGACTCAAGCCACCTA 1237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TAAGAATAGCAATGGGCATAGCTTATTGCCTTGACCATATGCACGGACTCAAGCCACCTC 1110
Query 1238 TAGTCCACAGCAATCTTCTCTCATCATCAGTTCAACTCACAGAGGACTACGCAGTCAAAA 1297
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1111 TAGTCCACAGCAATCTTCTTTCATCATCAGTTCAACTTACAGAGGACTACGCTGTCAAAA 1170
Query 1298 TTGCGGATTTCAATTTTGGATATTTAAAAGGCCCATCCGAGACAGAAAGCAGCACCAATG 1357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1171 TTGCGGATTTCAATTTTGGATATCTAAAAGGCCCATCCGAGACAGAAAGCAGCACCAATG 1230
Query 1358 CACTCATAGATACAAACATCTCAGAAACAACACAAGAAGACAATGTTCACAGCTTCGGGT 1417
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1231 CACTCATAGATACAAACATCTCAGAAACAACACAGGAAGAGAATGTTCACAGCTTCGGGT 1290
Query 1418 TGCTGTTGTTTGAACTGATGACAGGAAAACTCCCAGAGTCAGTTCAAAAAGGTGACTCGA 1477
|||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 1291 TGCTGTTGTTTGAATTGATGACTGGAAAACTCCCAGAGTCGGTTAAAAAAGGTGACTCGA 1350
Query 1478 TAGATACCGGATTGGCTGTCTTCTTGAGAGGAAAGACATTAAGGGAGATGGTGGATCCGA 1537
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1351 TAGATACCGGATTGGCTGACTTCTTGAGAGGAAAGACATTAAGGGAGATGGTGGATCCAA 1410
Query 1538 CAATTGAAAGCTTTGACGAGAAGATTGAGAATATAGGTGAAGTGATCAAAAGCTGCATAA 1597
|| | ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 CAGTGGAATGCTTTGATGACAAGATTGAGAATATAGGTGAAGTGATCAAAAGCTGCATAA 1470
Query 1598 GAGCAGACGCGAAACAGAGACCGATAATGAAGGAAGTCACAGGGAGATTACGAGAGATCA 1657
| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1471 GGGCAGACCCGAAACAGAGACCGATAATGAAAGAAGTCACAGGGAGATTACGAGAGATCA 1530
Query 1658 CTGGATTATCACCAGACGACACTATCCCAAAACTTTCACCACTCTGGTGGGCAGAGCTGG 1717
||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct 1531 CTGGATTATCACCAGACGATGCTATCCCAAAACTGTCACCGCTCTGGTGGGCAGAGCTGG 1590
Query 1718 AAGTTCTGTCCACTGCGTGAAGAGACAACTACTGAACTTCACaaaaaaaTCTGTAAGTAT 1777
|||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||||
Sbjct 1591 AAGTTCTGTCCACTGCGTGAAGAGACTACTACTCTACTTCACGAAAAA-TCTGTAAGTAT 1649
Query 1778 TAATATGAAGATTTGAGTGAGGTTTTTGAGTCTCTTAGAAGCTCTTGGCTTCTCTTTAGG 1837
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1650 TAATATGAAGATTTGAGTGAGGTTTTTGAGTC-CTTTGAAGCTCTTGGCTTCTCTTTAGG 1708
Query 1838 CTACTTTCATCTATCTATCTATATATAA--GTATGGAACTTAGTTTATATAACGGCTTTA 1895
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||
Sbjct 1709 CTACTTTCATCTATCTATATATATATAAATGTATGGAACTTAGTTTATATAACGGCCTTA 1768
Query 1896 AAATTCGG-TGGATCTATTTGGTCGTTTATGTCGTAAACAGAAAATGTCCTA-ATCACGG 1953
||||| || | |||| |||||||| ||||||||||||||||||||||||||| || |||
Sbjct 1769 AAATTTGGGTTGATCCATTTGGTCTTTTATGTCGTAAACAGAAAATGTCCTAGATAACGT 1828
Query 1954 TAATACCCCTTTTT-GGTGTGCATAA 1978
|||||||||||||| |||||||||||
Sbjct 1829 TAATACCCCTTTTTTGGTGTGCATAA 1854
> Ahg321719 jgi|Araly1|321719|fgenesh1_pm.C_scaffold_4001776
Length=1473
Score = 785 bits (425), Expect = 0.0
Identities = 878/1088 (81%), Gaps = 65/1088 (6%)
Strand=Plus/Plus
Query 671 TTCCTATAGTGGCTGGCTGCATA-GCGGGTG-CTGTGTTTATCCTCCTTTTAGCTACTGG 728
||||| ||||| ||||||| || || |||| || | ||| | || ||| ||| ||| ||
Sbjct 416 TTCCTTTAGTGATTGGCTGCGTAGGC-GGTGCCT-TTTTTCTTCTTCTTGTAGTTACCGG 473
Query 729 TGTTTTCTTTTTTAAAAGTAAGGCTGGGAAATCTGTGAATCCCTGGCGTACAGGTCTTAG 788
||| | || ||| | |||||||| |||||| |||||||||| |||||||| ||||||||
Sbjct 474 TGTCTACTGTTTCACTAGTAAGGCCGGGAAAACTGTGAATCCTTGGCGTACTGGTCTTAG 533
Query 789 TGGACAACTTCAGAAAGTGTTCATAACTGGTGTCCCCAAACTCAAAAGATCTGAGATTGA 848
||||||||||||||||| ||| |||||||| | || ||| |||||||||||||||||
Sbjct 534 CGGACAACTTCAGAAAGTATTCGTAACTGGTATACCTGTACTTAAAAGATCTGAGATTGA 593
Query 849 AGCTGCCTGTGAAGATTTTAGTAATGTCATTGGGTCTTGCCCCATTGGTACATTGTTCAA 908
|||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 594 AGCTGCATGTGAAGATTTTAGTAATGTCATTGGATCTTGCCCCATTGGGAAATTGTTCAA 653
Query 909 AGGGACGCTATCAAGTGGGGTGGAGATAGCTGTGGCTTCTGTTGCTACTGCGTCTGCCAA 968
||| || |||||||||| |||||||| ||||| |||||| |||||||| | ||||||||
Sbjct 654 AGGAACATTATCAAGTGGAGTGGAGATTGCTGTTGCTTCTTTTGCTACTACCTCTGCCAA 713
Query 969 AGAATGGACA-AATAATATAGAAATGCAGTTCAGAAAGAAGATCGAAATGTTATCCAAGA 1027
||| |||| | | |||| |||||| || || || |||||||||||||||||||| ||||
Sbjct 714 AGACTGGA-AGGACAATACAGAAATTCACTTTAGGAAGAAGATCGAAATGTTATCGAAGA 772
Query 1028 TAAACCACAAGAATTTTGTC-AACCTTCTTGGTTACTGTGAAGAAGAA-GAACCTTTCAC 1085
| |||||||||||||||| | ||||||||||| || ||||||||| || |||||||||||
Sbjct 773 TCAACCACAAGAATTTTG-CAAACCTTCTTGGGTATTGTGAAGAA-AAGGAACCTTTCAC 830
Query 1086 TAGGATCTTGGTCTTTGAATATGCAT-CAAACGGAACAGTCTTTGAACATTTACACTATA 1144
|||||||||| ||||||| ||||| | |||| ||| || ||||||| |||||||||| ||
Sbjct 831 TAGGATCTTGATCTTTGAGTATGC-TCCAAATGGATCACTCTTTGAGCATTTACACTTTA 889
Query 1145 AAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGGGCA-TAGCTTAT 1203
||||||||||||||||||| |||| ||||||| ||||||| |||||||| | |||| |||
Sbjct 890 AAGAATCAGAACACTTGGATTGGGGAATGCGGTTAAGAATTGCAATGGG-ATTAGCATAT 948
Query 1204 TGCCTTGACCATATGCACGGACTCAAGCCACCTATAGTC-CACAGCAATCTTC-TCTCAT 1261
|||||||||||||||||| |||||| |||||||||| | |||| ||||| || |||| |
Sbjct 949 TGCCTTGACCATATGCACCAACTCAATCCACCTATAG-CTCACACCAATC-TCGTCTCGT 1006
Query 1262 CATCAGTTCAACTCACAGAGGACTACGCAGTCAAAAT-TGCGGATTTCAATTTTGGATAT 1320
|||| |||| ||||||||||| || || |||||| | | |||||||| | | |
Sbjct 1007 CATCTCTTCAGCTCACAGAGGATTATGCTGTCAAAGTAT-CGGATTTC-A-----G---T 1056
Query 1321 TTAAAAGGCCCATCCGAGACAGAAAGC-AGCACCAATG-CAC--TCATAGATACAAACAT 1376
|| || ||||| |||||||| | | |||| ||| | ||| ||||||| ||||||||
Sbjct 1057 TT---CGGTCCATCTGAGACAGAGA-CTAGCATCAACGACACAGTCATAGACACAAACAT 1112
Query 1377 CTCAG-AAACAACACAAGAAGACAATGTTCACAGCTTCGGGTTGCTGTTGTTTGAACTGA 1435
||||| || | |||||| || ||| |||||||||| || || || || ||| |||
Sbjct 1113 CTCAGTCTTGAA-TCCAGAAGAAAACGTTTACAGCTTCGGTTTACTATTATTCGAAATGA 1171
Query 1436 TGA-CAGGAAAACTCCCAGAGTCAGTTCAA-AAAGGTGACTCGATAGATACCG-GATTGG 1492
| | | || ||||||||||| || ||| || ||| ||||||| |||||| || | |||
Sbjct 1172 TAAGC-GGGAAACTCCCAGAATCGGTT-AACAAACCTGACTCGGTAGATAGCGCG-CTGG 1228
Query 1493 CTG-TCTTCTTGAGAGGAAAGACAT-TAAG-GGAGATGGTGGATCCGACAATTGAAAGCT 1549
|| | ||||| |||||| |||| | | || ||||||| ||||| || | || || ||
Sbjct 1229 TTGAT-TTCTTAAGAGGAGAGAC-TCT-AGCCAAGATGGTAGATCCAAC-ACTGGAATCT 1284
Query 1550 T-TGACGAGAAGATTGAGAATATAGGTGAAGTGATCAAAAGC-TGCATAAG-AGCAGACG 1606
| ||| || |||||||||||||||||||||||||||||| | ||| | || | | |||
Sbjct 1285 TATGATGACAAGATTGAGAATATAGGTGAAGTGATCAAAT-CATGCCTCAGGACC-GACC 1342
Query 1607 CGAAACAGAGACCGATAATGAAGGAAGTCACAGGGA-GATTACGAGAGATCACTGGATTA 1665
||||| ||||||| | |||| |||||||||||| | | ||||| |||||||| ||| ||
Sbjct 1343 CGAAAGAGAGACCTACAATGCGGGAAGTCACAGG-ATGGTTACGGGAGATCACGGGAATA 1401
Query 1666 TCACCAGAC-GACACTATC-CCAAAACTT-TCACCACTCTGGTGGGCAGAGCTGGAAGTT 1722
||||| || || ||| | || ||| || ||||| || |||||||||||| |||| |||
Sbjct 1402 TCACC-GAATGATGCTA-CGCCGAAA-TTGTCACCTCTTTGGTGGGCAGAGTTGGAGGTT 1458
Query 1723 CTGTCCAC 1730
|||||||
Sbjct 1459 TTGTCCAC 1466
> Ahg934822 jgi|Araly1|934822|scaffold_402810.1
Length=1381
Score = 656 bits (355), Expect = 0.0
Identities = 746/926 (81%), Gaps = 62/926 (7%)
Strand=Plus/Plus
Query 843 GATTGAAGCTGCCTGTGAAGATTTTAGTAATGTCATTGGGTCTTGCCCCATTGGTACATT 902
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 476 GATTGAAGCTGCATGTGAAGATTTTAGTAATGTCATTGGATCTTGCCCCATTGGGAAATT 535
Query 903 GTTCAAAGGGACGCTATCAAGTGGGGTGGAGATAGCTGTGGCTTCTGTTGCTACTGCGTC 962
||||||||| || |||||||||| |||||||| ||||| |||||| |||||||| | ||
Sbjct 536 GTTCAAAGGAACATTATCAAGTGGAGTGGAGATTGCTGTTGCTTCTTTTGCTACTACCTC 595
Query 963 TGCCAAAGAATGGACA-AATAATATAGAAATGCAGTTCAGAAAGAAGATCGAAATGTTAT 1021
||||||||| |||| | | |||| |||||| || || || |||||||||||||||||||
Sbjct 596 TGCCAAAGACTGGA-AGGACAATACAGAAATTCACTTTAGGAAGAAGATCGAAATGTTAT 654
Query 1022 CCAAGATAAACCACAAGAATTTTGTC-AACCTTCTTGGTTACTGTGAAGAAGAA-GAACC 1079
| ||||| |||||||||||||||| | ||||||||||| || ||||||||| || |||||
Sbjct 655 CGAAGATCAACCACAAGAATTTTG-CAAACCTTCTTGGGTATTGTGAAGAA-AAGGAACC 712
Query 1080 TTTCACTAGGATCTTGGTCTTTGAATATGCAT-CAAACGGAACAGTCTTTGAACATTTAC 1138
|||| ||||||||||| ||||||| ||||| | |||| ||| || ||||||| |||||||
Sbjct 713 TTTCGCTAGGATCTTGATCTTTGAGTATGC-TCCAAATGGATCACTCTTTGAGCATTTAC 771
Query 1139 ACTATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGGGCA-TA 1197
||| ||||||||||||||||||||| |||| ||||||| ||||||| |||||||| | ||
Sbjct 772 ACTTTAAAGAATCAGAACACTTGGATTGGGGAATGCGGTTAAGAATTGCAATGGG-ATTA 830
Query 1198 GCTTATTGCCTTGACCATATGCACGGACTCAAGCCACCTATAGTC-CACAGCAATCTTC- 1255
|| ||||||||||||||||||||| |||||| |||||||||| | |||| ||||| ||
Sbjct 831 GCATATTGCCTTGACCATATGCACCAACTCAATCCACCTATAG-CTCACACCAATC-TCG 888
Query 1256 TCTCATCATCAGTTCAACTCACAGAGGACTACGCAGTCAAAAT-TGCGGATTTCAATTTT 1314
|||| ||||| |||| ||||||||||| || || |||||| | | |||||||| |
Sbjct 889 TCTCGTCATCTCTTCAGCTCACAGAGGATTATGCTGTCAAAGTAT-CGGATTTC-A---- 942
Query 1315 GGATATTTAAAAGGCCCATCCGAGACAGAAAGC-AGCACCAATG-CAC--TCATAGATAC 1370
| ||| || ||||| |||||||| | | |||| ||| | ||| ||||||| ||
Sbjct 943 -G---TTT---CGGTCCATCTGAGACAGAGA-CTAGCATCAACGACACAGTCATAGACAC 994
Query 1371 AAACATCTCAG-AAACAACACAAGAAGACAATGTTCACAGCTTCGGGTTGCTGTTGTTTG 1429
||||||||||| || | |||||| || ||| |||||||||| || || || || |
Sbjct 995 AAACATCTCAGTCTTGAA-TCCAGAAGAAAACGTTTACAGCTTCGGTTTACTATTATTCG 1053
Query 1430 AACTGATGA-CAGGAAAACTCCCAGAGTCAGTTCAA-AAAGGTGACTCGATAGATACCG- 1486
|| |||| | | || ||||||||||| || ||| || ||| ||||||| |||||| ||
Sbjct 1054 AAATGATAAGC-GGGAAACTCCCAGAATCGGTT-AACAAACCTGACTCGGTAGATAGCGC 1111
Query 1487 GATTGGCTG-TCTTCTTGAGAGGAAAGACAT-TAAG-GGAGATGGTGGATCCGACAATTG 1543
| ||| || | ||||| |||||| |||| | | || ||||||| ||||| || | ||
Sbjct 1112 G-CTGGTTGAT-TTCTTAAGAGGAGAGAC-TCT-AGCCAAGATGGTAGATCCAAC-ACTG 1166
Query 1544 AAAGCTT-TGACGAGAAGATTGAGAATATAGGTGAAGTGATCAAAAGC-TGCATAAG-AG 1600
|| ||| ||| || |||||||||||||||||||||||||||||| | ||| | || |
Sbjct 1167 GAATCTTATGATGACAAGATTGAGAATATAGGTGAAGTGATCAAAT-CATGCCTCAGGAC 1225
Query 1601 CAGACGCGAAACAGAGACCGATAATGAAGGAAGTCACAGGGA-GATTACGAGAGATCACT 1659
| ||| ||||| ||||||| | |||| |||||||||||| | | ||||| ||||||||
Sbjct 1226 C-GACCCGAAAGAGAGACCTACAATGCGGGAAGTCACAGG-ATGGTTACGGGAGATCACG 1283
Query 1660 GGATTATCACCAGAC-GACACTATC-CCAAAACTT-TCACCACTCTGGTGGGCAGAGCTG 1716
||| ||||||| || || ||| | || ||| || ||||| || |||||||||||| ||
Sbjct 1284 GGAATATCACC-GAATGATGCTA-CGCCGAAA-TTGTCACCTCTTTGGTGGGCAGAGTTG 1340
Query 1717 GAAGTTCTGTCCACTGCGTGAAGAGA 1742
|| ||| ||||||| || | ||||||
Sbjct 1341 GAGGTTTTGTCCACGGCTT-AAGAGA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79151529110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5