BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56070.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938554 jgi|Araly1|938554|scaffold_502745.1 815 0.0
> Ahg938554 jgi|Araly1|938554|scaffold_502745.1
Length=571
Score = 815 bits (441), Expect = 0.0
Identities = 519/557 (93%), Gaps = 4/557 (1%)
Strand=Plus/Plus
Query 127 AGAGTAAAATGGCGAATCCTAAAGTCTTCTTCGACATCTTGATTGGTAAGATGAAGGCAG 186
|||| |||||| |||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct 13 AGAGGAAAATGTCGAACCCAAAAGTCTTCTTTGATATCTTGATTGGAAAGATGAAGGCGG 72
Query 187 GGCGTGTTGTAATGGAGTTATTTGCAGATGTGACTCCGAGAACAGCTA-ATAATTTCCGT 245
|||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||
Sbjct 73 GGCGTGTTGTAATGGAGTTATTCGCAGATGTAACTCCGAGAACAGC-AGATAATTTCCGT 131
Query 246 GCTTTGTGCACTGGGGAGAATGGTATTGGGAAAGCAGGGAAGGCTTTACACTACAAAGGC 305
||| |||||||||| ||||| || ||||||| |||||| ||||| |||||||||||||||
Sbjct 132 GCTCTGTGCACTGGAGAGAAGGGAATTGGGAGAGCAGGAAAGGCATTACACTACAAAGGC 191
Query 306 TCAGCCTTTCACCGTATAATCCCAGGGTTCATGTGTCAAGGTGGAGATTTCACTCGTGGG 365
|| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 192 TCTTCCTTTCACCGTATAATCCCAGGATTCATGTGTCAAGGTGGAGATTTCACCCGTGGG 251
Query 366 AATGGAACTGGAGGAGAATCTATTTACGGGTCTAAATTTGAAGATGAGAACTTCAAGTTG 425
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 252 AATGGAACTGGAGGAGAATCGATTTACGGGTCTAAATTTGATGACGAGAACTTCAAGTTG 311
Query 426 AAGCACACTGGTCCAGGGATTTTGTCTATGGCTAACTCTGGTCCCAACACTAATGGTTCT 485
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 312 AAGCATACTGGTCCAGGGATTTTGTCTATGGCTAATTCTGGTCCCAACACAAATGGTTCT 371
Query 486 CAGTTCTTCATCTGCACAGAGAAGACTTCGTGGCTTGATGGGAAACATGTTGTTTTCGGG 545
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 372 CAGTTCTTCATCTGCACAGAGAAGACATCGTGGCTTGATGGGAAACACGTTGTTTTTGGG 431
Query 546 AAAGTTGTTGATGGATACAATGTGGTCAAGGCAATGGAGGATGTTGGCTCTGACATGGGA 605
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 432 AAAGTTGTTGATGGATACAATGTGGTCAAGGCAATGGAGAATGTTGGCTCTGACATGGGA 491
Query 606 AATCCTTCTGAACGAGTTGTGATTGAAGATTGTGGTGAGCTCAAGAACCCAAGTTCATAA 665
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 492 AATCCCTCTGAACCAGTTGTGATTGAAGATTGTGGTGAGCTAAAGAACCCAAGTTCATAA 551
Query 666 GTTCTTAAA-ACATTGG 681
||| ||||| |||||||
Sbjct 552 GTT-TTAAACACATTGG 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5