BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56090.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486048 jgi|Araly1|486048|fgenesh2_kg.5__2040__AT3G56090.1 1395 0.0
Ahg940425 jgi|Araly1|940425|scaffold_600969.1 209 3e-53
Ahg940050 jgi|Araly1|940050|scaffold_600594.1 115 7e-25
Ahg339295 jgi|Araly1|339295|fgenesh1_pg.C_scaffold_2001394 110 3e-23
> Ahg486048 jgi|Araly1|486048|fgenesh2_kg.5__2040__AT3G56090.1
Length=1053
Score = 1395 bits (755), Expect = 0.0
Identities = 1001/1109 (90%), Gaps = 59/1109 (5%)
Strand=Plus/Plus
Query 7 ACAAAACCCTTTCTCCTCCAATTTCGTCGCACAC-AGGAAA-ACAAA-ATGCTTCTCAAA 63
|||||||||||||||||||||| |||| || ||| | |||| | ||| ||||||||||||
Sbjct 1 ACAAAACCCTTTCTCCTCCAATCTCGTTGCTCACAAAGAAAGA-AAATATGCTTCTCAAA 59
Query 64 GCTGCTTCTACTTTCTCTCTATTGAACATTCATGGAGAGAAGAAAGACAtctctcctctc 123
|||||||||||||| ||||| |||||||||||||||||||||| ||||| | |||||
Sbjct 60 GCTGCTTCTACTTTTTCTCTCTTGAACATTCATGGAGAGAAGAGAGACA----T-CTCTC 114
Query 124 ttctcctcctcctcctccATTTCGTCTCCGGTTTCTTCTGGAAAATCCGGCAATCTCTCT 183
|| || || | |||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 115 --CT-CT-CT--T-CTCCATTTCGTCTCCGATTTCTTCTGGAAAATCCGGGAATCTCTCG 167
Query 184 TTCCCTCTTCGTGCTTCCAAGAGTTCAACCACTACCACAAGCACGTTGAGCGGCGTTGTG 243
||| ||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 168 TTCGCTCTTCGTGCTTCCAAGAG-T-------T----CAAGCACGTTGAGCGGCGTTGTG 215
Query 244 TTCGAGCCTTTCGAAGAGGTTAAGAAAGAGATGGATCTAGTTCCATCTGGTCAACAGCTT 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 216 TTCGAGCCTTTCGAAGAGGTTAAGAAGGAGATGGATCTAGTTCCATCTGGTCAACAGCTT 275
Query 304 TCTCTTGCTCGTCATTTGTACTCCCCTGAGTGCGAAGCCGCCGTCAATGAGCAGATCAAT 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 276 TCTCTTGCTCGTCATTTGTACTCCCCTGAGTGCGAAGCTGCCGTCAATGAGCAGATCAAT 335
Query 364 GTTGAGTATAACGTGTCGTATGTGTATCACGCTTTGTATGCATATTTCGATCGTGACAAC 423
||||| || || ||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 336 GTTGAATACAATGTGTCCTATGTCTATCACGCTTTGTATGCGTATTTCGATCGTGACAAC 395
Query 424 GTTGCCCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCGAGTGTGGAAGAACGAGAGCAC 483
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 396 GTTGCCCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCCAGTGTGGAAGAACGCGAGCAC 455
Query 484 GCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGGGAGGGTCAAGTTACAGCCCATG 543
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 456 GCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGGGAGAGTCAAGTTACAGCCCATG 515
Query 544 GTGTTGCCTCAGTCTGAGTTTGATCATCCTGAGAAAGGAGATGCTCTCTATGCTATGGAG 603
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 516 GTGCTGCCTCAGTCTGAGTTTGATCATCCTGAGAAAGGAGATGCTCTCTATGCCATGGAG 575
Query 604 TTGGCTCTTTCATTGGAGAAACTAGTCAATGAAAAGCTCCTAAACCTGCACAGTGTGGCT 663
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TTGGCTCTATCATTGGAGAAACTAGTCAATGAAAAGCTCCTAAACCTGCACAGTGTGGCT 635
Query 664 TCCAAGAACGATGATGTCCAGTTGGCAGATTTTATTGAGAGTGTGTTTCTGAACGAACAG 723
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 636 TCGAAGAACGATGATGTCCAGTTGGCAGATTTTATTGAGAGTGTGTTTCTGAATGAACAG 695
Query 724 GTGGAAGCCATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAAGGA 783
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 696 GTGGAAGCGATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGAAGACTCGGCAAAGGA 755
Query 784 CATGGAACATGGCATTTCGATCAGGAGCTTCTTGGTGCTGCTGCTTAATCTGAGTTTTAG 843
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 756 CATGGAACATGGCATTTCGATCAGGAGCTTCTTGGTGCTGCTGCTTAATC-GAGTTTTAG 814
Query 844 CTGTAATCTCGCAGTTTGGTTAACTTTTGAGTTATTTTGAGTATGAGATGTAACTTTTAA 903
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 815 CTGTACTCTCGCAGTTTGGTTAACTTTGGAGTTATTTTGAGTATGAGATGTAACTTTTGA 874
Query 904 GGTAGATTTGATCAATATCGATTCTGTTGTGAGAGAAAACAAGCTATTACGCTCCTTGGG 963
|||||| ||||| ||||||| |||||||||||||||||||||||||||| | ||
Sbjct 875 GGTAGACTTGATTAATATCGTTTCTGTTGTGAGAGAAAACAAGCTATTA---T--TT--- 926
Query 964 GTTAACTTTCTTTGTGTTTTCAGTATTATGGTTTTGTCCACTTCGTAATATCACTTTCCT 1023
| || | | | || ||||| || || || || | | ||||| ||||||
Sbjct 927 -T-AAGTAT-TATG-GTTTT--GTCC-AT--TTC-GT--A------A-TATCAGTTTCCT 967
Query 1024 TTAGAACATTTCAAATCAGCAGTTGTTTTGAGGTGTAATGTAATGGTCACTGATATTTTC 1083
|||||||||||||||||||| || |||||| ||| ||||||||||| || ||||||| |
Sbjct 968 TTAGAACATTTCAAATCAGCCGTGGTTTTG-GGTATAATGTAATGGGCATTGATATT--C 1024
Query 1084 TATTACCCCTGCATGAAAGTAGTATGTTT 1112
||| |||||||||||||||||||||||||
Sbjct 1025 TATCACCCCTGCATGAAAGTAGTATGTTT 1053
> Ahg940425 jgi|Araly1|940425|scaffold_600969.1
Length=339
Score = 209 bits (113), Expect = 3e-53
Identities = 128/135 (95%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 462 GAGTGTGGAAGAACGAGAGCACGCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGG 521
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 GAGTGTGGAAGAACGCGAGCACGCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGG 133
Query 522 GAGGGTCAAGTTACAGCCCATGGTGTTGCCTCAGTCTGAGTTTGATCATCCTGAGAAAGG 581
||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 134 GAGAGTCAAGTTACAGCCCATGGTGCTGCCACAGTCTGAGTTTGATCATCCTGAGAAAGG 193
Query 582 -AGATGCTCTCTATG 595
| ||| ||||||||
Sbjct 194 TA-ATGATCTCTATG 207
> Ahg940050 jgi|Araly1|940050|scaffold_600594.1
Length=386
Score = 115 bits (62), Expect = 7e-25
Identities = 69/72 (96%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 721 CAGGTGGAAGCCATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAA 780
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CAGGTGGAAGCGACTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAA 132
Query 781 GGACATGG-AAC 791
|||||||| |||
Sbjct 133 GGACATGGTAAC 144
> Ahg339295 jgi|Araly1|339295|fgenesh1_pg.C_scaffold_2001394
Length=360
Score = 110 bits (59), Expect = 3e-23
Identities = 66/69 (96%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 724 GTGGAAGCCATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAAGGA 783
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 GTGGAAGCGACTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAAGGA 132
Query 784 CATGG-AAC 791
||||| |||
Sbjct 133 CATGGTAAC 141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5