BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56110.1
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486050 jgi|Araly1|486050|fgenesh2_kg.5__2042__AT3G56110.1 1465 0.0
> Ahg486050 jgi|Araly1|486050|fgenesh2_kg.5__2042__AT3G56110.1
Length=988
Score = 1465 bits (793), Expect = 0.0
Identities = 929/994 (93%), Gaps = 12/994 (1%)
Strand=Plus/Plus
Query 88 TTCAGACTAACGGATCGAAACTTCTCAGCCAAATCAGCCGCATCTAACCTCACGCGCCGC 147
|||| ||| ||||||| |||| |||| ||||||||||| ||| | ||||||||||||| |
Sbjct 1 TTCACACTTACGGATCCAAACCTCTCGGCCAAATCAGCTGCACCAAACCTCACGCGCCAC 60
Query 148 CGCAATGGCAACTCCACCGACGCTACCTGTCACCAATCAGCAAGCTGTTCAATCTCAGCC 207
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 CGCGATGGCAACTCCACCGACGCTACCTGTCACCAATCAGCAAGCAGTTCAATCTCAGCC 120
Query 208 TCCAATCAACACACCTGCTTTTCGTACTTTCTTCTCACGTCTCTCCACCTCGATCCGTGA 267
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 ACCAATCAACACACCTGCTTTTCGTACTTTCTTCTCACGTCTCTCTACCTCGATCCGTGA 180
Query 268 TGGCTTGTCACAGCGTCGTCCATGGACGGAGCTCATCGATCGTAGTTCCATGGCGAGACC 327
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 181 TGGCTTGTCACAGCGTCGTCCATGGACGGAGCTCATCGATCGGAGTTCCATGGCTCGACC 240
Query 328 TGAATCTCTCACCGATGCCTTGTCCCGGATAAGGAAGAATCTCGCTTACTTCAAGGTTAA 387
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 241 TGAATCTCTCACCGATGCCTTGTCCCGGATCAGGAAAAATCTCGCTTACTTCAAGGTTAA 300
Query 388 CTACGTCGCCATCGTCTCCCTCGTACTCGCCTTTTCGCTTTTCTCTCATCCTCTCTCCCT 447
||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 CTACGTCGCAATCGTGTCGCTCGTGCTCGCCTTTTCGCTTTTCTCTCATCCTCTCTCCCT 360
Query 448 CCTTGTCCTCATCGGACTCCTAGGCGGTTGGATGTTTCTCTACCTCTTCCGTCCCTCAGA 507
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 361 CCTTGTCCTCATCGGACTCCTAGGTGGTTGGATGTTCCTCTACCTCTTCCGTCCCTCAGA 420
Query 508 TCAGCCACTGGTCGTCTTCGGTCGCACTTTCTCTGATCGAGAGACTCTGCTTGCTCTTGT 567
||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 421 TCAGCCACTGGTCATCTTCGGTCGCACTTTTTCTGATCGAGAGACTCTACTTGCTCTGGT 480
Query 568 GC-TGTCTACGATCGTCGTCGTGTTTATGACGAGCGTTGGATCTCTCTTAACCTCCGCGC 626
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 -CTTGTCTACGATCGTCGTCGTGTTTATGACGAGCGTTGGATCTCTCTTAACCTCCGCGC 539
Query 627 TTATGATTGGTGTTGCAATCGTTTGCGTACACGGTGCGTTTGTGGTTCCGGATGATCTCT 686
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 TTATGATTGGCGTAGCAATCGTTTGCGTGCACGGTGCGTTTGTGGTTCCGGATGATCTCT 599
Query 687 TCTTGGACGAGCAAGAGCCTGCGAATGCTGGATTACTCTCATTCCTTGGAGGTTCTGCTA 746
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCATGGACGATCAAGAGCCTGCGAATGCTGGATTACTCTCATTCCTTGGAGGTTCTGCTA 659
Query 747 CCTCAGCTGCTGCAGCTGTCTCAGGGAGAGTCTAAGAGCTGGATTTGATTCAGATCTCGT 806
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 660 CCTCAGCTGCTGCTGCTGTCTCAGGGAGAGTTTAAGAGCTCGATTTGATTCAGATCTCTT 719
Query 807 CAATTGTGGTTGGTAACTCCGTACTGATTTTAGTGATTTGTTGTTGTTGAAATGGAATGT 866
|||| |||||||||||||||||||||||| ||| |||||| |||||||||| || |||||
Sbjct 720 CAATCGTGGTTGGTAACTCCGTACTGATTCTAGGGATTTGGTGTTGTTGAATTG-AATGT 778
Query 867 AGATTCGTAACGAAGCTCTACAGATTTAGAACTACGAATTTTTGGTTGCAGTATCTGCTT 926
||||||||||| ||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 779 AGATTCGTAACAAAGCTCTACAGATTTAGAATTACGAGTTTTTGGTTGCAATATCTGCTT 838
Query 927 CTTCTTG--TTGTTTTATCTCTTTGGTGGCTCGACACTTTTATGTTCAGATGTAGAAAAC 984
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 CTTCTTGCGTTGTTTTATCTCTTTGGTGGCTCGACACTTTTATGTTCAGATGTAGAGAAC 898
Query 985 TCAAA-GTTGATCTTTCTCTATCGTTTCTCCTATTGTGGGATTCACTTTTAAAATTTC-A 1042
||||| |||||||||||||||| | | |||||||||||||||||||| ||||| |||| |
Sbjct 899 TCAAAAGTTGATCTTTCTCTATTGGT-CTCCTATTGTGGGATTCACTGTTAAA-TTTCCA 956
Query 1043 TCTAC-CTTCAAATCAGTTTGTTCTCTTTTTTCC 1075
||| | ||| |||| |||||||||||| |||||
Sbjct 957 TCT-CGCTT-AAATTGGTTTGTTCTCTTGTTTCC 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40029062850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5