BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56120.1
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938564 jgi|Araly1|938564|scaffold_502755.1 1711 0.0
> Ahg938564 jgi|Araly1|938564|scaffold_502755.1
Length=1415
Score = 1711 bits (926), Expect = 0.0
Identities = 998/1034 (97%), Gaps = 0/1034 (0%)
Strand=Plus/Plus
Query 491 CTCCTTCCATTCAAAGATGTTATAGCAAAGGTTATCTACGACAAAAATTATCCAAGGATC 550
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 381 CTCCTTCCATTCAAAGATGTTATAGCAAAGGTTATCTACGATAAAAATTATCCAAGGATC 440
Query 551 AAGACAATTGTTAATAAAGTTGGGACTATCAGTAATGAGTTTCGAGTTCCAAAGTTTGAA 610
||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||
Sbjct 441 AAGACAATTGTGAATAAAGTCGGGAGTATCAGTAATGAGTTTCGAGTGCCAAAGTTTGAA 500
Query 611 GTGTTAGCTGGAGAAAATGGGATGGAAACAGAAGTAAAGCAATATGGGGCTAGATTTAAG 670
||| ||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 501 GTGCTAGCTGGCGAAAATGGGATGGAAACGGAAGTAAAACAATATGGGGCAAGATTTAAG 560
Query 671 CTGGACTATGGCTTGGTTTATTGGAATTCAAGATTGGAACATGAGCACATGCGGCTTTCA 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CTGGACTATGGCTTGGTTTATTGGAATTCAAGATTGGAACATGAGCACATGCGGCTTTCA 620
Query 731 TCTTTGTTTAAACCTGGGGAAACCGTATGTGATATGTTTGCTGGTATTGGGCCTTTTGCT 790
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 621 TCTTTGTTTAAACCTGGAGAAACCGTGTGTGATATGTTTGCTGGTATAGGGCCTTTTGCT 680
Query 791 ATTCCAGCTGCACAGAAAGGATGCTTTGTGTATGCAAATGATTTAAATCCAGACAGTGTT 850
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 681 ATTCCAGCTGCACAGAAAGGATGCTTCGTTTATGCAAATGATTTAAATCCAGACAGTGTT 740
Query 851 CGGTACTTGAAGATCAATGCAAAGTTCAATAAGGTTGATGATTTGATTTGTGTGCACAAC 910
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 741 CGGTACTTGAAGATCAATGCAAAGTTCAATAAGGTTGACGATTTGATTTGTGTGCACAAT 800
Query 911 ATGGATGCTCGTAAATTTTTCTCTCACTTGATGGCGGTGTCAACTTGCGAGGATAATTTG 970
|||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 801 ATGGATGCTCGTAAATTTTTCTCTCAGTTGATGGCGGTGTCAACTTGTGAGGGTAATTTG 860
Query 971 CAATCAGTGGCTGATAATGATAAAACAAAGGAAGCAGCCGTGAGTCGAGGAGGTGAGACT 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 CAATCAGTGGCTGATAATGATAAAACAAAGGAAGCAGCCGTGAGTCGAGGAGGTGAGACT 920
Query 1031 AATTCCAGTGGAGAGGAAATACGTGAATCCAATGCAAGCATAAATGAGCCTCTTGGTGCA 1090
|||||||||| |||||| ||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 921 AATTCCAGTGAAGAGGAGATACGTGAATCAAATGCGAGCAGAAATGAGCCTCTTGGTGCA 980
Query 1091 AATAAGAAGCCATCTGGTACTACAAAGACGGAAAATGGGGTAGGAAAAGACTGCAAGAGT 1150
|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 981 AATAAGAAGCCATCTGGTACTACAGAGACAGAAAATGGGGTAGGAAAAGATTGCAAGAGT 1040
Query 1151 ATAGAAGGACACGCAAATAAGAGATTGAGACAAACGTTGCTTCCAATCGCAAAGCCGTGG 1210
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1041 ATTGAAGGACACGCAAATAAGAGGTTGAGACAAACGTTGCTTCCAATCGCAAAGCCGTGG 1100
Query 1211 GAACATATCGACCATGTTATTATGAACCTTCCAGCATCTGCCTTGCAGTTTCTTGATTCG 1270
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1101 GAACATATTGACCATGTTATTATGAACCTTCCAGCTTCTGCCTTGCAGTTTCTCGATTCT 1160
Query 1271 TTCAGTAATGTTATTCAAAAGAAGTATTGGAAAGGACCTCTTCCATTAATTCATTGCTAT 1330
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1161 TTCAGTAATGTTATTCAAAAGAAGTATTGGAAAGGACCTCTTCCTTTAATTCATTGCTAT 1220
Query 1331 TGTTTCATCCGTGCAAGCGAAACCACAGAGTTTATAATTGCAGAAGCTGAAACTGCTTTG 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TGTTTCATCCGTGCAAGCGAAACCACAGAGTTTATAATTGCAGAAGCTGAAACTGCTTTG 1280
Query 1391 AAGTTCCATATAGAAGATCCAGTCTTCCACAAGGTTAGAGATGTTGCTCCAAACAAGGCT 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 AAGTTCCATATAGAAGATCCAGTCTTCCACAAGGTTAGAGATGTTGCTCCAAACAAGGCT 1340
Query 1451 ATGTTTTGCCTAAGCTTTAGACTACCTGAAGCATGCTTGAAGCAAGAAGAGTAAAAGACA 1510
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1341 ATGTTTTGCCTAAGCTTTAGACTACCTGAAGCATGCTTGAAGCAAGAAGACTAAAAGACA 1400
Query 1511 TTTCTAGGAAAGAA 1524
||||||||||||||
Sbjct 1401 TTTCTAGGAAAGAA 1414
Score = 619 bits (335), Expect = 2e-176
Identities = 366/381 (96%), Gaps = 2/381 (1%)
Strand=Plus/Plus
Query 78 AAAACGACACCGTTAGCACCATGTTTGATGAAAGCAAGTTCGATGTCAATCTCAAGCTCT 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACGACACCGTTAGCACCATGTTTGATGAAAGCAAGTTCGATGTCAATCTCAAGCTCT 60
Query 138 GGGCTCTTAGAATTCCCCGTGAACTCTGTAAAAGCGCATCTCGCATTCTCAATGGATACA 197
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GGGCTCTTAGAATTCCCCGGGAACTCTGTAAAAGCGCAACTCGCATTCTCAATGGATACA 120
Query 198 TGCTTAACATGCCGCGAATTAAGCCCATCACTGAAGATCCTACCTGTGAAAAGACTCGTT 257
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGCTCAATATGCCACGAATTAAGCCCATCACTGAAGATCCTACCTGTGAAAAGACTCGTT 180
Query 258 TGGTGATATTGTCCGAAAGTGTTAAAAATGCTGATTTG-TCGGAGATACCCGAGGAAAAA 316
|||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||
Sbjct 181 TGGTGATATTGTCCGAAAGTGTTAAAAATGCTGATTTGGT-GGAGATACCCGATGAAAAA 239
Query 317 CTAAACCAGCTTAAGAAACTTAGTGAACTTGAGGTTGTTCCTCATTCGGTTACTCTTGGG 376
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 240 CTAAACCAGCTTAAGAAACTAAGTGAACTTGAAGTTGTTCCTCATTCGGTTACTCTTGGG 299
Query 377 TATTCCTATTGGAGTGCAGACCACCTTTTGAAGCAGATTCTACCAGATGGATTGGATATA 436
|||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||
Sbjct 300 TATTCCTATTGGAGTGCAGATCACATATTGAAGCAGATTCTACCAGATGGAGTGGATATA 359
Query 437 CCTTCCTCTTTTGAAACTATA 457
||||||||||||||||| |||
Sbjct 360 CCTTCCTCTTTTGAAACAATA 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63382167680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5