BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56130.1
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486053 jgi|Araly1|486053|fgenesh2_kg.5__2045__AT3G56130.1 1893 0.0
> Ahg486053 jgi|Araly1|486053|fgenesh2_kg.5__2045__AT3G56130.1
Length=1210
Score = 1893 bits (1025), Expect = 0.0
Identities = 1154/1216 (95%), Gaps = 10/1216 (1%)
Strand=Plus/Plus
Query 1 ACGGACCGTAGTGTAGTAGTAGATGCGGCGGACGGAGTTACCAAAGAAGAAGGCCGCTCA 60
|||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1 ACGGACCGTAGTGTTGTAGTAGATGTGGCGGACGGAGTAACCAAAGAAGAAGGCCGCTCA 60
Query 61 AAATAATTAAATTTGTTCAACCGTCATCTTCTTCAACTGATCTTAGCTCAACTAACACAC 120
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 61 AAATAATTAAATTTGCTCAACCGTCATCTTCTTCAACCGATCTTAGCTCAACTAACCCA- 119
Query 121 TCT-TTCTTCTTGGCGTCAATTCAATCAACCAAAACCTTTTTCTCCTATCTAGCTCACGC 179
| | ||||| ||||||| || |||||||||||||||| ||||||||| ||||||||||||
Sbjct 120 T-TGTTCTTTTTGGCGTTAACTCAATCAACCAAAACC-TTTTCTCCTTTCTAGCTCACGC 177
Query 180 TTTCTTCTTCTTCCAATGGCGTCTTCTGCAGCTCTCGGATCTCTCCATCAGACTTTAGGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTTCTTCTTCTTCCAATGGCGTCTTCTGCAGCTCTCGGATCTCTCCATCAGACTTTAGGG 237
Query 240 T-CAGCCATTAATTCACAGAGTGAGGTTCACTCGCTTTCTGGAAACTGGTCTGCCTCTGG 298
| | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 238 TGC-GCCATTAATTCACAGAGTGAGGTTCACTCTCTTTCTGAAAACTGGTCTGCCTCTGG 296
Query 299 TAATTCATGTGTGCCACGGTGGAGATTATCCAACAGGAACAGCAACTACAGGCTCGTGTT 358
|||||| ||||| |||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 297 TAATTCTTGTGTACCACGGTGGAGATTATCCAACAGGAACAGCAAGTACACGCTTGTGTT 356
Query 359 ACGTGCTAAGGCCGCTAAATCTTCGACAACAACCATAAGTGATGGTTCATCTGATGCTAG 418
|||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 357 ACGTGCTAAGGCCGCTAAATCTTCAACAACAACCAAAAGTGATGGTTCATCGGATGCTAG 416
Query 419 TGTGTCAGACGGGAAGAAAACAGTTCGACGGATAACTTTCCCGAAAGAAGTGGAGGCACT 478
||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 417 TGTGTCAAACGGGAAGAAAACTGTTCGACGGATCACTTTCCCGAAAGAAGTGGAGGCACT 476
Query 479 GGTTCACGAGATGTGTGATGAAACTGAGGTTGCTGTGCTGCAACTTAAGGTTGGAGATTT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGTTCACGAGATGTGTGATGAAACTGAGGTTGCTGTGCTGCAACTTAAGGTTGGAGATTT 536
Query 539 CGAGATGAACCTAAAACGGAAGATTGGAGCAGCCACAAACCCCATTCCCGTGGCGGATAT 598
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 537 CGAGATGAACCTAAAACGGAAGATTGGAGCGGCCACAAACCCCATTCCCATGGCGGATAT 596
Query 599 ATCTCCAACTGTAGCGCCTCCTATTCCTTCTGAACCTATGAATAAATCTGCTTCTTCGGC 658
||||||||| |||| |||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 597 ATCTCCAACCATAGCTCCTCCTATTCCTTCTGAACCCATGAATAAATCTGTTTCTTCAGC 656
Query 659 TCCTAGCCCATCTCAAGCAAAGCCTTCCTCTGAGAAAGTGTCTCCATTTAAGAATACATC 718
||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 657 TCCTAGCCCATCTAAAGCAAAACCTTCCTCTGAAAAAGTGTCTCCATTTAAGAATACATC 716
Query 719 ATATGGGAAACCAGCAAAGTTGGCTGCTTTGGAGGCATCTGGATCCACCAACTATGTGT- 777
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 717 ATATGGGAAACCAGCAAAGTTGGCTGCTTTGGAGGCATCTGGATCTAACAACTATGT-TC 775
Query 778 TAGTCACATCTCCCGCAGTGGGCAAGTTTCAGAGGAGCAGAACTGTAAAAGGAAAGAAAC 837
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 776 TAGTCACATCTCCCGCAGTGGGCAAGTTTCAGAGGAGTAGAACTGTAAAAGGAAAGAAAC 835
Query 838 AATCTCCTAGCTGCAAAGAGGGTGATGCAATAAAGGAAGGCCAAGTTATTGGATACTTAC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AATCTCCTAGCTGCAAAGAGGGTGATGCAATAAAGGAAGGCCAAGTTATTGGATACTTAC 895
Query 898 ATCAGTTGGGAACAGAACTTCCAGTGACGTCAGATGTAGCTGGAGAAGTCCTTAAGCTTC 957
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 896 ATCAGTTGGGAACAGAACTTCCAGTGACGTCGGATGTAGCTGGGGAAGTCCTTAAGCTTC 955
Query 958 TTTCAGATGACGGAGACTCCGTAGGTTATGGAGATCCTCTGGTTGC-AGTCTTGCCATCT 1016
||||||||||||||||||| ||||||||||| ||||||||||| || | |||||||||||
Sbjct 956 TTTCAGATGACGGAGACTCTGTAGGTTATGGTGATCCTCTGGTCGCGA-TCTTGCCATCT 1014
Query 1017 TTCCACGACATCAACATCCAGTGATGATGGTTTCTTCAGCCCAATTCCATAGCAAATGAA 1076
|||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||
Sbjct 1015 TTCCACGACATCAACATCCAGTGAGGACGGTTTCTTCAGCCCAATTCCGCATCAAATGAA 1074
Query 1077 TAGTCTTTCATCCGGAGACTGTACTATTCATCTTCTCCTGTGTTTGTTCAATGAAGATTT 1136
| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1075 CAATCTTTCATCCGGAGACTGTACTATTCATCTTCTCCTGTGTTTGTTTAATGGAGATTT 1134
Query 1137 GTAATCTGTTTAGTTGCAAAGAGTCTACTTTGATCTTGCTCTCATCATTTGTCACGTAAT 1196
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1135 GTAATCTGTTTAGTTGCAAAGAGTCTATTTTGATCTTGCTCTCATCATTTGTCACGTAAT 1194
Query 1197 GTGGATTTTCTGCACC 1212
||||||||||||||||
Sbjct 1195 GTGGATTTTCTGCACC 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5