BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56140.1
Length=2565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486055 jgi|Araly1|486055|fgenesh2_kg.5__2047__AT3G56140.1 3812 0.0
Ahg483095 jgi|Araly1|483095|fgenesh2_kg.4__2155__AT2G40400.1 1986 0.0
Ahg922126 jgi|Araly1|922126|scaffold_103407.1 316 4e-85
Ahg932172 jgi|Araly1|932172|scaffold_400160.1 305 8e-82
Ahg942583 jgi|Araly1|942583|scaffold_603127.1 268 1e-70
Ahg914969 jgi|Araly1|914969|Al_scaffold_0001_5223 134 4e-30
> Ahg486055 jgi|Araly1|486055|fgenesh2_kg.5__2047__AT3G56140.1
Length=2448
Score = 3812 bits (2064), Expect = 0.0
Identities = 2338/2467 (95%), Gaps = 32/2467 (1%)
Strand=Plus/Plus
Query 79 GCTGACGTGTACAAACGGAGCTCTCTTCTCAGCTCTGGCCTCT--GAGAATGAAACTCAC 136
|||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||
Sbjct 1 GCTGACGTGTACAAACGGAGCTCTCTTCTC--TTCT--TCTCTGAGAGAATGAAACTTAC 56
Query 137 CACGAATGATCTCTTCGCTTCTCAACCATTATTTCACTGCCCTTGCTCCTCCTCCTCCCG 196
||| ||||||||||||||||||||||||||||| |||||||| ||||||| || | ||
Sbjct 57 CACAAATGATCTCTTCGCTTCTCAACCATTATTCCACTGCCCCTGCTCCT-CT--T-CC- 111
Query 197 TCCTCGCCGCCGACGTTTCTATGGCCTTCATTTTCCGATCAACCTCACCAGC-GAGAAGA 255
| |||| ||||| |||||| ||||||||||| |||||||||| ||||| | | |||||||
Sbjct 112 T-CTCGTCGCCGCCGTTTCCATGGCCTTCATCTTCCGATCAATCTCACTA-CTGAGAAGA 169
Query 256 ACAA-TTCTCTATCCATTGTTGCTCTTTCTGATTCCGATCTTCCATCACGAACCGCCTTC 314
| || || |||||||| ||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct 170 ATAACTT-ACTATCCATCGTTGCTCTTTCTGATTCCGATGTTCCATCCCGAACCGCCGTC 228
Query 315 TCTCGCCGCGCTTTTCTACTCGCGCCACCACTTCTAGT-C-TCGGCTGCTTCCTTGTTTC 372
||||||||||||||||| || || || ||||| || | | || ||||||||| ||||||
Sbjct 229 TCTCGCCGCGCTTTTCTCCTGGCCCCGCCACTCCT-CTCCGTC-GCTGCTTCCCTGTTTC 286
Query 373 TCAAACCGTCTGTCTCTTTAGCCTCCGAGGAGAGCTCGTCCGCTACAGTAACATCGCCTG 432
|||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct 287 TCAAGCCGTCTGTCTCTTTAGCCACCGAGGCGAGCTCGTCCGCTACAGTAACTTCGCCTG 346
Query 433 CGGAATCAGCAGctcctcctcctcct-c--ctGCGACCACAACACCGTCGCCGCCTCCAC 489
|||||||||||||||||||||||||| | | || || | || || |||||||| |||
Sbjct 347 CGGAATCAGCAGCTCCTCCTCCTCCTGCGACCGCCACTGCTCCATCGCCGCCGCCTGCAC 406
Query 490 CCGTGAATAAGGAAGAGACGATAACCTCGAGAATCTATGACGCGACGGCCATTGGTGAGC 549
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CCGTGAATGAGGAAGAGACTATAACCTCGAGAATCTATGACGCGACGGCCATTGGTGAGC 466
Query 550 CGATGGCTATGGGAAAAGATAAGAAGAAGGTGTGGGAGAAGCTGTTGAACGCGAGAGTTG 609
|||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 467 CGATGGCTATGGGAAAAGATAAGAAGAAGGTGTGGGAGAAGCTGATGAATGCCAGAGTTG 526
Query 610 TGTACCTCGGTGAGGCGGAGCAAGTGCCTACCAAAGACGACAAAGAGCTTGAACTCGAAA 669
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 527 TGTACCTCGGCGAGGCGGAGCAAGTTCCTACCAAAGACGACAAAGAGCTTGAACTCGAAA 586
Query 670 TCGTTAGAAACCTGAGGAAGAGATGCGTTGAGAGCGAGCGTCAAATCTCTGTAGCACTGG 729
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 587 TCGTTAGAAACCTGAGGAAGAGATGCGTTGAGAACGAGCGTCAAATCTCTGTAGCACTAG 646
Query 730 AAGCATTCCCTCTCGATTTGCAGGATCAGCTTAATCAATACATGGATAAGAGGATGGACG 789
||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 647 AAGCATTCCCTCTTGATTTGCAGGACCAGCTTAATCAATACATGGATAGGAGGATGGACG 706
Query 790 GAGAGACATTGAAGTCTTATGTGACACATTGGCCTGCTCAACGTTGGCAAGAATATGAGC 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GAGAGACATTGAAGTCTTATGTGACACATTGGCCTGCTCAACGTTGGCAAGAATATGAGC 766
Query 850 CTCTTTTAAGTTATTGCCGCGATAACTCTGTTAGACTAATTGCTTGTGGCACTCCTCTCA 909
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CTCTTTTAAGTTACTGTCGCGATAACTCTGTTAGACTAATTGCTTGTGGCACTCCTCTCA 826
Query 910 AGGTTTTAAGAACTGTCCAAGCAGAAGGTATCCGTGGTCTTTCAAAATCTGAGCGTAAAT 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 AGGTTTTAAGAACTGTCCAAGCAGAAGGTATCCGTGGTCTTTCAAAATCTGAGCGTAAAT 886
Query 970 TATACACTCCCCCTGCTGGTTCTGGGTTTATCTCAGGATTTTCTTCATTCTCACGTAGAT 1029
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 887 TATACACTCCCCCTGCTGGTTCTGGGTTTATTTCAGGATTTTCTTCCTTCTCACGTAGAT 946
Query 1030 CTACATTCGATATGAGTCTCCCAACACAGATTGTTCCTTTTGGACCGAGTTCATATTTGT 1089
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 947 CTACATTTGATATGAGTCTCCCAACACAGATTGTTCCGTTTGGACCAAGTTCTTATTTGT 1006
Query 1090 CGGCACAAGCAAGAGTTGTTGAAGACCATACAATGTCACAAGTTATTTTACAAGCAGTAG 1149
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CGGCACAGGCAAGAGTTGTTGAAGACCATACAATGTCACAAGTTATTTTACAAGCAGTAG 1066
Query 1150 CAGATGGAGGGGGTACTGGTCTACTGTTAGTGGTGACAGGGGCAAGTCATGTTGAGTATG 1209
||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1067 CAGATGGAGGGGGTAGTGGTCTACTGTTAGTGGTAACAGGGGCGAGTCATGTTGAGTATG 1126
Query 1210 GTTCAAGAGGAACAGGTTTGCCAGCAAGGATCTCAAGGAAGTTTCCAAAGAAAAACCAAG 1269
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 GCTCAAGAGGAACAGGTTTGCCAGCAAGGATCTCAAGGAAGTTTCCAAAGAAAAACCAAC 1186
Query 1270 TTGTTGTATTACTTGACCCTGAAAGACAGTTCTTGCGAAGAGAGGGCGAAACTCCAGTTG 1329
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1187 TTGTTGTATTACTTGATCCTGAAAGACAGTACTTGCGAAGAGAGGGCGAAACTCCAGTTG 1246
Query 1330 CTGATTTCTTGTGGTATTCTGCTGCAAGACCCTGCAGTAGAAACTGCTTTGACCGAGCAG 1389
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1247 CTGATTTCTTGTGGTATTCTGCAGCAAGACCCTGCAGTAGAAACTGCTTTGACCGAGCAG 1306
Query 1390 AGATTGCTCGAGTAATGAATGCAGCTGGCAGGAGGCGAGATGCCCTTCCTCCCGATATTC 1449
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1307 AGATTGCTCGAGTAATGAATGCAGCTGGCAGGAGGCGAGATGCCCTTCCACCGGATATTC 1366
Query 1450 AAAATGGATTAGACCTTGGTCTGGTGTCACCTGAGGTTCTGCAGAATCTCTTTGATTTGG 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 AAAATGGATTAGACCTTGGTCTGGTGTCACCTGAGGTTCTGCAGAATCTCTTTGATTTGG 1426
Query 1510 AGCAGTATCCTCTTATTTCTGAGCTTACTCAGCGGTTTCAGGGTTTCCGAGAAAGGTTGT 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 AGCAGTATCCTCTTATTTCTGAGCTTACTCAGCGGTTTCAGGGTTTCCGAGAAAGGTTGT 1486
Query 1570 TGGCAGATCCAAAATTCCTGAATAGGTTAGCCATCGAAGAAGCTATATCAATAACAACTA 1629
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 1487 TGGCAGATCCAAAATTCCTGAATAGATTAGCTATCGAAGAGGCTATATCAATAACAACTA 1546
Query 1630 CACTAATAGCACAATATGAGAAGCGAAAAGAGAATTTCTTTGAAGAAATTGACTATGTTA 1689
|| |||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct 1547 CATTAATAGCACAATATGAGAAGCGGAGAGAGAATTTCTTTGAAGAAATCGACTATGTTA 1606
Query 1690 TAACTGATACAGTGAGAGGATCAGTCGTTGATTTTTTCACAGTTTGGCTTCCTGCACCAA 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 TAACTGATACAGTGAGAGGATCAGTCGTTGATTTTTTCACAGTTTGGCTTCCTGCACCAA 1666
Query 1750 CTTTGTCTTTTCTTTCATATGCTGATGAGACCACTGGACCAGACAGCATAGACGCCCTGA 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 CTTTGTCTTTTCTTTCATATGCTGATGAGACCACTGGACCAGACAGCATAGACGCCCTGA 1726
Query 1810 GAGGCCTCCTAGGATCCATACCTGATAACGCATTTCAAAAAAGTCTTGCTGGAAGAGAGT 1869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 GAGGCCTCCTAGGATCCATACCTGATAACGCATTTCAAAAAAGTCTTGCTGGAAGAGAGT 1786
Query 1870 GGAACCTGAATCTTAGAATTGCTTCAGTTATTGTTGGTGGCTTGAAGCTTGCTGGTGTTG 1929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 GGAACCTGAATCTTAGAATTGCTTCAGTTATTGTTGGTGGCTTGAAGCTTGCTGGTGTTG 1846
Query 1930 GAGTTGTTTCCAGTTTTGCAGCTGTGGGAGCTTCAAATGCATTGAATATAGCACGAAAGG 1989
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1847 GAGTTGTTTCCAGTTTTGCAGCTGTGGGAGCTTCAAATGCATTGAATGTAGTACGAAAGG 1906
Query 1990 TCATTAAACCCGAGCTGGTTGTGGCTGAGAAACCTAAGAGGTCTCCTCTTCTGAAGACGG 2049
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1907 TCATTAGACCCGAGTTGGTTGTTTCTGAGAAACCTAAGAGGTCTCCTCTTCTGAAGACGG 1966
Query 2050 CAATGGTTTACGGAGGTTTTCTGGGAACATCTGCAAATCTTCGTTACCAGATAATTGCGG 2109
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 CAATGGTTTATGGAGGTTTTCTGGGAACATCTGCAAATCTTCGTTACCAGATAATTGCGG 2026
Query 2110 GATTAATAGAGCATCGCCTATCTGATGAGCTTTCTTCGCAACCTCTACTTGTAAATGCTA 2169
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 2027 GATTAATAGAGCATCGCCTTTCTGATGAGCTTTCCTCTCAACCTCTACTTGTAAATGCTA 2086
Query 2170 TTTCATTTGTTGTCAGGACCCTAAACTCATATTTCGGAACGCAGCAATGGATCGATCTTG 2229
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2087 TTTCATTTGTTGTCAGGACCCTAAACTCATATTTTGGAACGCAGCAATGGATCGATCTTG 2146
Query 2230 CACGCTCTACGGGTCTGCAAACTCAGAAAAGCATCCCAGCCTCTAAAGAAATTTCAGAGG 2289
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2147 CACGCTCTACAGGTCTGCAAACTCAGAAAAGCATCCCAGCCTCTAAAGAAATTCCAGAGG 2206
Query 2290 CTTTGGAAGAACCGACAGTGGAATGCGATACTACTACTGAAGAGGAAAGTATCGATAAGC 2349
||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2207 CTTTGGAAGAATCGACGGTGGAATGCGATACTACTACTGAAGAGGAAAGTATCGACAAGC 2266
Query 2350 TCAATAATCAATGATACTGGTGAGGCTACCCCACTAGTTATCAATTAATAGTTGTTTGCC 2409
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2267 TCAATAATCAATGATACTGGTGAGGCTACCCCACTAGTTATCAA--AATAGTTGTTTGCC 2324
Query 2410 ATATAAGCTTTAGATCGTAGAAATTAGCATATAATAATTTCACATTTCTTAAGTTGTATG 2469
||| | |||||||||||||||||| |||||| | |||||||||| |||||||||||||||
Sbjct 2325 ATA-A-GCTTTAGATCGTAGAAATGAGCATA-A-TAATTTCACAATTCTTAAGTTGTATG 2380
Query 2470 TTCGTACATGTGCTT---GGCAAATAGTGATGGTTTCAATATAAATTTGTTGTCTTAAAC 2526
|||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 2381 TTCGTATTTGTGCTTCTTGGCAAATAGTGATGGTTTCAATATAAATTTCTTGTCTTAAAC 2440
Query 2527 TCACATT 2533
|||||||
Sbjct 2441 TCACATT 2447
> Ahg483095 jgi|Araly1|483095|fgenesh2_kg.4__2155__AT2G40400.1
Length=2415
Score = 1986 bits (1075), Expect = 0.0
Identities = 1676/1962 (85%), Gaps = 58/1962 (3%)
Strand=Plus/Plus
Query 433 CGGAATCAGCAGctcctcctcctcctcctGC-G-ACCACAACACCGTCGCCGCCTCC-AC 489
||||||||| ||||| ||||||||||||| | | | | ||| | | || ||||| |
Sbjct 305 CGGAATCAGTAGCTCTTCCTCCTCCTCCTCCTGTTGC-CGTCACTG-CTCCACCTCCGCC 362
Query 490 -CC-GTGAATAAGGAAGAGACGATAACCTCGAGAATCTATGACGCGAC-G-GCCATTGGT 545
|| ||| | ||||||||| |||||| || ||||||||||||||| | | | | |||||
Sbjct 363 GCCTGTGGAGAAGGAAGAGTTGATAACTTCTAGAATCTATGACGCGTCTGTG-C-TTGGT 420
Query 546 GAGCCGATGGCT-ATGGGAAAAGATAAGAAGAAG-GTGTGGGAGAAGCTGTTGAACGCGA 603
|||||||||||| |||| |||||||||||| || || ||||||||| ||||||| ||||
Sbjct 421 GAGCCGATGGCTGTTGGG-AAAGATAAGAAG-AGAGTTTGGGAGAAGTTGTTGAATGCGA 478
Query 604 -GAGTTGTGTACCTCGGTGAGGCGGAGCAAGTGCCTACCAA-AGACGACAAAGAGCTTGA 661
|| ||||||| ||||| || || || |||||||||| ||| ||||||||| | |||||
Sbjct 479 GGA-TTGTGTATCTCGGAGAAGCAGAACAAGTGCCTA-CAAGAGACGACAAGGTTCTTGA 536
Query 662 ACTCGAAATCGTTAGAAACCTGAGGAAGAGATGCGTTGAGAGCGAGCGTCAAATCTCTGT 721
||||||||||| || || |||||||| |||| | |||||||| ||||| | ||| |
Sbjct 537 GCTCGAAATCGTGAGGAATTTGAGGAAGCGATGTATCGAGAGCGATCGTCAGTTATCTTT 596
Query 722 AGCACTGGAAGCATTCCCTCTCGATTTGCAGGATCAGCTT-AATCAATACATGGATAAGA 780
|||| |||||||||| ||||| ||||||||||| ||| || || ||||||||||||||||
Sbjct 597 AGCATTGGAAGCATTTCCTCTTGATTTGCAGGAACAG-TTAAACCAATACATGGATAAGA 655
Query 781 GGATGGACGGAGAGACATTGAAGTCTTATGTGACACATTGGCCTGCTCAACGTTGGCAAG 840
||||||| | |||| |||||||| |||||| |||||||||| | ||||||||||||||
Sbjct 656 GGATGGATGCAGAGGTTTTGAAGTCGTATGTGTCACATTGGCCAGTTCAACGTTGGCAAG 715
Query 841 AATATGAGCCTCTTTTAAGTTATTGCCGCGATAACTCTGTTAGACTAATTGCTTGTGGCA 900
| ||||||||||| |||||||| || ||| | ||| | |||| ||| |||||||| ||||
Sbjct 716 AGTATGAGCCTCTGTTAAGTTACTGTCGCCAAAACGCAGTTAAACTCATTGCTTGCGGCA 775
Query 901 CTCCTCTCAAGGTTTTAAGAACTGTCCAAGCAGAAGGTATCCGTGGTCTTTCAAAATCTG 960
|||| |||||||||||||||||||||||||| || ||||||||||| || ||| | ||||
Sbjct 776 CTCCGCTCAAGGTTTTAAGAACTGTCCAAGCTGAGGGTATCCGTGGCCTATCAGATTCTG 835
Query 961 AGCGTAAATTATACACTCCCCCTGCTGGTTCTGGGTTTATCTCAGGATTTTCTTCATTCT 1020
||||||||||||||||||| ||||| ||||| |||||||||||||| ||| |||| ||||
Sbjct 836 AGCGTAAATTATACACTCCTCCTGCGGGTTCAGGGTTTATCTCAGGGTTTACTTCCTTCT 895
Query 1021 CACGTAGATCTACATTCGATATGAGTCTCCC-AACACAGATTGTTCCTTTTGGACCGAGT 1079
||||||| ||| || || |||||| || ||| |||||||||||||| ||||||||||||
Sbjct 896 CACGTAGTTCTTCACTCAATATGAATC-CCCTCACACAGATTGTTCCATTTGGACCGAGT 954
Query 1080 TCATATTTGTCGGCACAAGCAAGAGTTGTTGAAGACCATACAATGTCACAAGTTATTTTA 1139
|| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 955 TCTTATTTGTCGGCGCAAGCTAGAGTTGTTGAAGACCATACTATGTCACAAGTTATTTTA 1014
Query 1140 CAAGCAGTAGCAGATGGAGGGGGTACTGGTCTACTGTTAGTGGTGACAGGGGCAAGTCAT 1199
|||||||| ||||||||||| || |||||||| || ||||||||||||||||||| |||
Sbjct 1015 CAAGCAGTTGCAGATGGAGGTGGAACTGGTCTGCTTTTAGTGGTGACAGGGGCAAACCAT 1074
Query 1200 GTTGAGTATGGTTCAAGAGGAACAGGTTTGCCAGCAAGGATCTCAAGGAAGTTTCCAAAG 1259
||||||||||| |||||||||||||| ||||| ||||||||||| ||||| |||| |||
Sbjct 1075 GTTGAGTATGGGTCAAGAGGAACAGGCTTGCCTGCAAGGATCTCTAGGAAAATTCCCAAG 1134
Query 1260 AAAAACCAAGTTGTTGTATTACTTGACCCTGAAAGACAGTTCTTGC-GAAGAGAGGGCGA 1318
|||| ||| |||||||||||||||| |||||||| |||||||||| ||| |||||| ||
Sbjct 1135 AAAAGTCAACTTGTTGTATTACTTGATCCTGAAAGGCAGTTCTTGCGGAA-AGAGGGTGA 1193
Query 1319 AACTCCAGTTGCTGATTTCTTGTGGTATTCTGCT-GCAAGACCCTGCAGTAGAAACTGCT 1377
| |||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||
Sbjct 1194 ATCTCCAGTTGCTGATTTCTTGTGGTATTCTG-TGGCCAGACCCTGCAGCAGAAACTGCT 1252
Query 1378 TTGACCGAGCAGAGATTGCTCGAGTAATGAATGCAGCTGGCAGGAGGCGAGATGCCCTTC 1437
||||||||||||| || ||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 1253 TTGACCGAGCAGAAATCGCTCGTGTAATGAATGCAGCTGGTAGGAGACGAGATGCCCTTC 1312
Query 1438 CTCC-CGATATTCAAAATGGATTAGACCTTGGTCTGGTGTCACCTGAGGTTCTGCAGAAT 1496
| || || |||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1313 C-CCAAGACATTCAAAAAGGATTAGACCTTGGTCTGGTGTCACCTGAGATTCTGCAGAAT 1371
Query 1497 CTCTTTGATTTGGAGCAGTATCCTCTTATTTCTGAGCTTACTCAGCGGTTTCAGGGTTTC 1556
|||||||||||||||| |||||||||||||| ||| |||| | ||||| |||||||||
Sbjct 1372 TTCTTTGATTTGGAGCAATATCCTCTTATTTCAGAGTTTACAAAACGGTTCCAGGGTTTC 1431
Query 1557 CGAGAAAGGTTGTTGGCAGATCCAAAATTCCTGAATAGGTTAGCCATCGAAGAAGCTATA 1616
|||||||||||||||||||| || |||||| ||||||| ||||| || ||||||||||||
Sbjct 1432 CGAGAAAGGTTGTTGGCAGACCCCAAATTCTTGAATAGATTAGCTATTGAAGAAGCTATA 1491
Query 1617 TCAATAACAACTACACTAATAGCACAATATGAGAAGCGAAAAGAGAATTTCTTTGAAGAA 1676
|| |||||||| ||||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct 1492 TCGATAACAACGACACTTGTAGCTCAATATGAGAAGCGGAAAGAAAACTTCTTTGAAGAA 1551
Query 1677 ATTGACTATGTTATAACTGATA-CAGTGAGAGGATCAGTCGTTGATTTTTTCACAGTTTG 1735
| ||||||||||| ||||||| | || |||| |||||| ||||||||||||||||||||
Sbjct 1552 CTCGACTATGTTATTACTGATAGC-GTAAGAGCATCAGTTGTTGATTTTTTCACAGTTTG 1610
Query 1736 GCTTCCTGCACCAACTTTGTCTTTTCTTTCATATGCTGATGAGACCACTGGACCAGACAG 1795
||| ||||||||||| ||||||||| | ||||| ||||||||||| | ||||||| ||||
Sbjct 1611 GCTGCCTGCACCAACCTTGTCTTTTATCTCATACGCTGATGAGACAATTGGACCAAACAG 1670
Query 1796 CATAGACGCCCTGAGAGGCCTCCTAGGATCCATACCTGATAACGCATTTCAAAAAAGTCT 1855
|||||| ||||| | || ||||||||||||||||||||| || |||||||||||||||||
Sbjct 1671 CATAGATGCCCTAAAAGACCTCCTAGGATCCATACCTGACAATGCATTTCAAAAAAGTCT 1730
Query 1856 TGCTGGA-AGAGAGTGGAAC-CTGAATCTTAGAATTGCTTCAGTTATTGTTGGTGGCTTG 1913
|| |||| | ||||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1731 TGGTGGACA-AGAGTGG-ACTCTGAATCTTAGGATTGCTTCAGTTATTGTCGGTGGCTTG 1788
Query 1914 AAGCTTGCTGGTGTTGGAGTTGTTTCCAGTTTTGCAGCTGTGGGAGCTTCAAATGCATTG 1973
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1789 AAGCTTGCTGGTGTTGGAGTTGTTTCCAGTTTTGCAGCTGTGGGATCTTCAAATGCTTTG 1848
Query 1974 AATATAGCACGAAAGGTCATTAAACCCGAGCTGGTTGT-GGCTGAGAAACCTAAGAGGTC 2032
|| | |||||| |||||||||| ||| ||| ||| || |||| || | ||||||||
Sbjct 1849 TATGCAATACGAAAATTCATTAAACCAGAGTTGGGTGTTGG-TGAGCAAGCAAAGAGGTC 1907
Query 2033 TCCTCTTCTGAAGACGGCAATGGTTTACGGAGGTTTTCTGGGAACATCTGCAAATCTTCG 2092
|||| | ||||||||||| | || || ||||||| ||||||||||||| ||||| | ||
Sbjct 1908 TCCTATGCTGAAGACGGCCCTTGTGTATGGAGGTTATCTGGGAACATCTTCAAATATCCG 1967
Query 2093 TTACCAGATAATTGC-GGGATTAATAGAGCATCGCCTATCTGATGAGCTTTCTTCGCAAC 2151
||| |||||||| || ||| ||||||||||||||| | ||||| ||||||||||| ||||
Sbjct 1968 TTATCAGATAATCGCTGGG-TTAATAGAGCATCGCATTTCTGACGAGCTTTCTTCTCAAC 2026
Query 2152 CTCTACTTGTAAA--TGCTATTTCATTTGTTGT-C-AGGACCCTAAACTCATA-TTTCGG 2206
||||||||||||| || |||||||||||||| | || | | ||| ||| || ||| ||
Sbjct 2027 CTCTACTTGTAAACATG--ATTTCATTTGTTGTTCGAGTAGC-TAA-CTCCTACTTT-GG 2081
Query 2207 AACGCAGCAATGGATCGATCTTGCACGCTCTACGGGTCTGCAAACTCAGAAAAGCATCCC 2266
||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |
Sbjct 2082 AACTCAGCAATGGATTGATCTTGCGCGCTCTACGGGTCTGCAGACTCAGAAAAGTGTCGC 2141
Query 2267 AGCCTCTAAAGAAATTTCAGAGGCTTTGGAAG--AACCGACAGTGGAATGC-GATACTAC 2323
| | || || |||| | |||| || ||| | || | |||||||||| | | ||| |
Sbjct 2142 AACTTCCAACCAAATCCCCGAGG-TTGGGA-GCCAATCTACAGTGGAATACAG-TAC-A- 2196
Query 2324 TACTGAAGAGGAAAGTATCGATAAGCTCAATAATCAATGATA 2365
|||||||||| |||||||||| | ||||| |||||||||||
Sbjct 2197 -ACTGAAGAGGCAAGTATCGATGATCTCAAGAATCAATGATA 2237
> Ahg922126 jgi|Araly1|922126|scaffold_103407.1
Length=259
Score = 316 bits (171), Expect = 4e-85
Identities = 187/195 (96%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 588 AAGCTGTTGAACGCGAGAGTTGTGTACCTCGGTGAGGCGGAGCAAGTGCCTACCAAAGAC 647
|||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 15 AAGCTGATGAATGCGAGAGCTGTGTACCTCGGTGAGGCGGAGCAAGTGCCTACCAAAGAC 74
Query 648 GACAAAGAGCTTGAACTCGAAATCGTTAGAAACCTGAGGAAGAGATGCGTTGAGAGCGAG 707
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 75 GACAAAGAGCTTGAACTCGAAATCGTTAGAAACTTGAGGAAGAGATGCGTTGAGAGCCAG 134
Query 708 CGTCAAATCTCTGTAGCACTGGAAGCATTCCCTCTCGATTTGCAGGATCAGCTTAATCAA 767
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 135 CGTCAAATATCTGTAGCACTGGAAGCATTCCCTCTCGATTTTCAGGACCAGCTTAATCAA 194
Query 768 TACATGGATAAGAGG 782
|||||||||||||||
Sbjct 195 TACATGGATAAGAGG 209
> Ahg932172 jgi|Araly1|932172|scaffold_400160.1
Length=259
Score = 305 bits (165), Expect = 8e-82
Identities = 186/196 (95%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 588 AAGCTGTTGAACGCGAGAGTTGTGTACCTCGGTGAGGCGGAGCAAGTGCCTACCAAAGAC 647
|||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 15 AAGCTGATGAATGCGAGAGCTGTGTACCTCGGTGAGGCGGAGCAAGTGCCTACCAAAGAC 74
Query 648 GACAAAGAGCTTGAACTCGAAATCGTTAGAAACCTGAGGAAGAGATGCGTTGAGAGCGAG 707
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 75 GACAAAGAGCTTGAACTCGAAATCGTTAGAAACTTGAGGAAGAGATGCGTTGAGAGCCAG 134
Query 708 CGTCAAATCTCTGTAGCACTGGAAGCATTCCCTCTCGA-TTTGCAGGATCAGCTTAATCA 766
|||||||| ||||||||| ||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 135 CGTCAAATATCTGTAGCAGTGGAAGCATTCCCTCTCGAATTT-CAGGACCAGCTTAATCA 193
Query 767 ATACATGGATAAGAGG 782
||||||||||||||||
Sbjct 194 ATACATGGATAAGAGG 209
> Ahg942583 jgi|Araly1|942583|scaffold_603127.1
Length=203
Score = 268 bits (145), Expect = 1e-70
Identities = 161/169 (95%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 581 GTGGGAGAAGCTGTTGAACGCGAGAGTTGTGTACCTCGGTGAGGCGGAGCAAGTGCCTAC 640
||||||||||||| |||| || |||| |||||||||||||||||||| ||||||||||||
Sbjct 8 GTGGGAGAAGCTGATGAATGCCAGAGCTGTGTACCTCGGTGAGGCGGGGCAAGTGCCTAC 67
Query 641 CAAAGACGACAAAGAGCTTGAACTCGAAATCGTTAGAAACCTGAGGAAGAGATGCGTTGA 700
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 68 CAAAGACGACAAAGAGCTTGAACTCGAAATCGTTAGAAACTTGAGGAAGAGATGCGTTGA 127
Query 701 GAGCGAGCGTCAAATCTCTGTAGCACTGGAAGCATTCCCTCTCGATTTG 749
||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 128 GAGCGAGCGTCAAATATCTGTAGCACTGGAAGCATTCCCTTTCGATTTG 176
> Ahg914969 jgi|Araly1|914969|Al_scaffold_0001_5223
Length=369
Score = 134 bits (72), Expect = 4e-30
Identities = 111/128 (87%), Gaps = 9/128 (7%)
Strand=Plus/Plus
Query 1684 ATGTTATAACTGATACAGTGAGAGGATCAGTCGTTGATTTTTTCACAGTTTGGCTTCCTG 1743
||| |||||||||||||| |||||||||||| ||| | ||||| |||||||||||||||
Sbjct 191 ATGCTATAACTGATACAGCGAGAGGATCAGTTGTT--TATTTTCCCAGTTTGGCTTCCTG 248
Query 1744 CACCAACT-T-TGTCTTT-TCTTTCATATGCTGATGAGACCACTGGACCAGACAGCATAG 1800
|||||||| | ||||| | |||| | | | |||||||||||||||||||||||||||||
Sbjct 249 CACCAACTCTCTGTCTCTGTCTT-C-TCT--TGATGAGACCACTGGACCAGACAGCATAG 304
Query 1801 ACGCCCTG 1808
|| |||||
Sbjct 305 ACACCCTG 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96711132055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5