BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56150.1
Length=3033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486056 jgi|Araly1|486056|fgenesh2_kg.5__2048__AT3G56150.1 3690 0.0
Ahg898803 jgi|Araly1|898803|Al_scaffold_0005_2769 2023 0.0
Ahg905323 jgi|Araly1|905323|Al_scaffold_0003_2451 1535 0.0
> Ahg486056 jgi|Araly1|486056|fgenesh2_kg.5__2048__AT3G56150.1
Length=2864
Score = 3690 bits (1998), Expect = 0.0
Identities = 2207/2306 (96%), Gaps = 21/2306 (1%)
Strand=Plus/Plus
Query 737 GATGTGGATGAACCTACTGATAATCTCACTTGGGAGAAGATGCTGAGCAAAAAAGATAAG 796
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 571 GATGTGGAGGAACCTACTGATAATCTCTCTTGGGAGAAGATGCTGAGCAAAAAAGATAAG 630
Query 797 CTTTTGGAGAAGCTAATGAATAAAGATCCTAAAGAGATCACTTGGGACTGGGTCAACAAG 856
||| |||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 631 CTTATGGAGAAGCTGATTAATAAAGATCCCAAAGAGATCACCTGGGACTGGGTCAACAAG 690
Query 857 AAGTTCAAGGAAATTGTGGCTGCTCGTGGAAAAAAGGGCACTGCTCGATTTGAGCTAGTT 916
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 691 AAGTTCAAGGAAATTGTGGCTTCTCGTGGGAAAAAGGGCACTGCTCGATTTGAGCTAGTT 750
Query 917 GATCAGCTTACGCACTTGACAAAGATTGCCAAGACTCCTGCACAGAAGCTTGAAATCTTG 976
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 751 GATCAGCTTACGCACTTGACAAAGATTGCCAAGACTCCTGCGCAGAAGCTTGAAATCTTG 810
Query 977 TTTAGCGTTATTTCGGCTCAGTTTGATGTGAATCCAGGTCTCAGCGGGCACATGCCTATC 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TTTAGCGTTATTTCGGCTCAGTTTGATGTGAATCCAGGTCTCAGCGGGCACATGCCTATC 870
Query 1037 AATGTCTGGAAGAAATGCGTGCTTAACATGCTCACCATACTGGACATTCTCGTCAAGTAC 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 AATGTCTGGAAGAAATGCGTGCTTAACATGCTCACCATACTGGACATTCTCGTCAAGTAC 930
Query 1097 AGTAACATTGTTGTGGATGACACAGTTGAGCCTGATGAGAACGAAACTTCAAAGCCAACA 1156
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 931 AATAACATTGTTGTGGATGACACAGTTGAACCTGATGAGAATGAAACTTCAAAGCCAGCA 990
Query 1157 GATTATGATGGAAAAATTCGGGTCTGGGGAAATTTGGTTGCATTCTTGGAGAGGGTTGAC 1216
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 991 GATTATGATGGAAAAATCCGGGTCTGGGGAAATTTGGTTGCATTCTTGGAGAGGATTGAC 1050
Query 1217 ACTGAGTTTTTCAAGAGTTTGCAATGCATTGATCCTCACACCCGTGAGTATGTTGAGAGG 1276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 ACTGAGTTTTTCAAGAGTTTGCAATGCATTGATCCTCACACCCGTGAGTATGTTGAGAGA 1110
Query 1277 CTAAGGGATGAGCCCATGTTCTTGGCCCTTGCTCAGAACATCCAGGACTACTTTGAGCGG 1336
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1111 CTGAGGGATGAGCCCATGTTCTTGGCCCTTGCTCAGAACATCCAGGACTACTTCGAGCGG 1170
Query 1337 ATGGGTGATTTTAAAGCTGCTGCAAAGGTAGCCTTAAGACGTGTTGAGGCAATATACTAC 1396
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1171 ATGGGTGATTTTAAAGCTGCTGCAAAGGTAGCCTTAAGACGAGTTGAGGCAATATATTAC 1230
Query 1397 AAGCCCCAGGAAGTTTATGATGCAATGAGGAAATTGGCTGAGTTGGT-------G--GAA 1447
||||||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 1231 AAGCCCCAGGAAGTTTATGATGCTATGAGGAAATTGGCTGAGTTGGTGGAAGAAGAAGAA 1290
Query 1448 GAAGAAGAAGAAACTGAGGAGGCCAAAGAGGAAAGTGGACCTCCTACTTCATTTATTGTT 1507
|||||||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||
Sbjct 1291 GAAGAAGAAGAAACTGAGGAGGCCAAAGTGGAGAGTGGACCTCCTACATCATTCATTGTT 1350
Query 1508 GTTCCGGAGGTTGTTCCCCGTAAGCCTACCTTCCCAGAGAGCAGCCGAGCTATGATGGAT 1567
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1351 GTTCCGGAGGTTGTTCCCCGAAAGCCTACCTTCCCAGAGAGCAGCCGAGCAATGATGGAT 1410
Query 1568 ATTCTTGTGTCCCTTATCTACAGAAATGGAGATGAGCGGACCAAAGCGCGTGCGATGCTA 1627
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1411 ATTCTTGTGTCCCTTATCTACAGAAATGGAGATGAGCGAACCAAAGCTCGTGCGATGCTA 1470
Query 1628 TGTGATATCAATCACCATGCTTTAATGGACAACTTTGTGACTGCTAGAGACCTGTTGCTG 1687
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1471 TGTGATATCAATCACCATGCTTTAATGGACAACTTTGGGACTGCTAGAGACCTGTTGCTG 1530
Query 1688 ATGAGTCATCTGCAAGACAACATCCAGCACATGGACATCTCAACACAGATTCTCTTTAAC 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 ATGAGTCATCTGCAAGACAACATCCAGCACATGGACATCTCAACACAGATTCTCTTTAAC 1590
Query 1748 AGGACCATGGCGCAGCTTGGTCTTTGCGCCTTCCGGGCTGGAATGATCACTGAGTCCCAT 1807
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1591 AGGACCATGGCGCAGCTTGGTCTTTGCGCCTTCCGGGTTGGAATGATCACTGAGTCCCAT 1650
Query 1808 AGCTGCCTTTCCGAGCTGTACTCTGGTCAAAGAGTGAGAGAGTTGCTTGCCCAAGGTGTC 1867
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1651 AGCTGCCTTTCCGAGCTGTATTCTGGTCAAAGGGTGAGGGAGTTGCTTGCCCAAGGTGTT 1710
Query 1868 TCGCAAAGCCGATACCATGAGAAAACCCCGGAGCAGGAAAGGATGGAAAGGAGAAGACAA 1927
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 1711 TCGCAAAGCCGATACCATGAGAAGACCCCAGAGCAGGAAAGGATGGAGAGGAGAAGACAA 1770
Query 1928 ATGCCGTACCACATGCACTTAAACCTTGAGCTTCTGGAGGCAGTTCATCTCATCTGTGCC 1987
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1771 ATGCCGTACCACATGCACTTAAACCTCGAGCTCCTGGAGGCAGTTCATCTCATCTGTGCC 1830
Query 1988 ATGCTTCTTGAAGTCCCAAACATGGCTGCAAACTCGCACGATGCCAAACGCAGAGTGATT 2047
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 ATGCTACTTGAAGTCCCAAACATGGCTGCAAACTCGCACGATGCCAAACGCAGAGTGATT 1890
Query 2048 AGCAAGAATTTCCGCCGCCTGCTCGAGATCAGTGAAAGGCAAGCATTCACTGCACCGCCT 2107
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1891 AGCAAGAATTTCCGCCGCCTGCTCGAGATCAGTGAAAGGCAAGCATTCGCTGCGCCGCCT 1950
Query 2108 GAGAATGTACGTGACCATGTCATGGCAGCCACCAGAGCCCTGACCAAAGGAGATTTCCAG 2167
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1951 GAGAATGTACGTGACCACGTCATGGCAGCCACCAGAGCCCTGACCAAAGGGGATTTCCAG 2010
Query 2168 AAGGCGTTTGAAGTTTTGAACTCTCTTGAGGTCTGGAGGCTGCTCAAGAACCGTGACAGC 2227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2011 AAGGCGTTTGAAGTTTTGAACTCTCTTGAGGTCTGGAGGCTGCTCAAGAACCGTGACAGC 2070
Query 2228 ATCCTTGACATGGTGAAGGATAGGATCAAAGAAGAGGCTCTAAGGACTTACCTATTCACA 2287
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2071 ATCCTCGATATGGTGAAGGATAGGATCAAAGAAGAGGCACTAAGGACTTACCTATTCACA 2130
Query 2288 TACTCAAGCTCTTATGAGTCCTTGAGTCTTGATCAGCTGGCCAAAATGTTTGACGTCTCT 2347
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2131 TACTCAAGCTCCTATGAGTCCTTAAGTCTTGATCAGCTGGCCAAAATGTTTGACGTCTCT 2190
Query 2348 GAGCCGCAGGTCCACAGCATTGTGAGTAAGATGATGATTAATGAGGAACTGCATGCAAGC 2407
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 2191 GAGCCGCAGGTCCACAGCATTGTGAGCAAGATGATGATTAATGAGGAGCTTCATGCAAGC 2250
Query 2408 TGGGATCAGCCAACACGATGCATCGTCTTCCATGAAGTGCAACACAGCAGATTACAATCA 2467
||||| |||||||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2251 TGGGACCAGCCAACTCAATGCATCGTCTTCCATGAAGTGCAACACAGCAGACTACAATCA 2310
Query 2468 TTGGCTTTCCAGTTAACGGAGAAACTCTCGATTTTGGCAGAAAGCAATGAGAGGGCAATG 2527
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2311 TTGGCTTTCCAGTTAACCGAGAAACTCTCGATTTTGGCAGAAAGCAATGAAAGGGCAATG 2370
Query 2528 GAATCTAGAACCGGTGGAGGTGGTCTGGATCTGAGTTCAAGGAGAAGGGACAACAATCAG 2587
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 2371 GAATCTAGAACCGGTGGAGGTGGTGTGGATCTGAGCTCAAGGAGAAGGGACAACAATCAA 2430
Query 2588 GACTATGCAGGAGCAGCATCAGGTGGTGGTGGATATTGGCAAGACAAGGCGAATTACGGA 2647
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2431 GACTATGCAGGAGCAGCATCAGGTGGTGGTGGATATTGGCAAGACAAGACGAATTACGGA 2490
Query 2648 CAAGGAAGACAAGGCAACAGATCAGGTTATGGTGGAGGAAGATCATCTGGACAAAATGGT 2707
||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2491 CAAGGAAGACAGGGTAACAGGTCAGGGTATGGTGGAGGAAGATCATCTGGACAAAATGGT 2550
Query 2708 CAGTGGTCAGGGCAGAACCGAGGAGGAGGGTATGCAGGAAGAGTTGGTTCAGGAAACAGA 2767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2551 CAGTGGTCAGGGCAGAACCGAGGAGGAGGGTATGCAGGAAGAGTTGGTTCAGGAAACAGA 2610
Query 2768 GGTATGCAGATGGATGGCTCAAGCCGTATGGTGAGTCTTAACCGAGGTGTTCGTACTTAA 2827
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2611 GGTATGCAGACGGATGGCTCAAGCCGTATGGTGAGTCTTAACCGAGGTGTTCGTACTTAA 2670
Query 2828 AGAGGATGAGGAGAAATCTGCAGTGTTGACCTTAGTCTCAACCTTTTGTTATGTTTTGGA 2887
|||||||| | |||||||||||||| |||||||||||||||||||||| |
Sbjct 2671 AGAGGATG---------C---AGTGTTGACCTTAGGCTCAACCTTTTGTTATGTTTTGAA 2718
Query 2888 TTCCTTTTGGTTATCAAATGGTTCTTTCTAAGAGATGTTCATCACATTTTCTCGCATTGT 2947
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2719 TTCCTTTTTGTTATCAAATGGTTCTTTCTAAGAGATGTTCATCACATTTTCTCGCATTGT 2778
Query 2948 GATTGTTTATTTTCTTTGTGATATTGGCAGTTGTTGGAAAAGACTTTTAAGAATGCTTTA 3007
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2779 GATTGCTTCTTTTCTTTGTGATATTGGCAGTTGTTGGAAAAAACTTTTAAGAATGCTTTA 2838
Query 3008 CTGGAAAGTTTAATAAGttttttttt 3033
|| |||||||||||||||||| |||
Sbjct 2839 TTGAAAAGTTTAATAAGTTTTTGTTT 2864
Score = 839 bits (454), Expect = 0.0
Identities = 538/578 (93%), Gaps = 8/578 (1%)
Strand=Plus/Plus
Query 122 AAGATGACGTCTCGTTTTTTCACTCAGGTTGGAAGTGAAAGTGAAGATGAAAGTGATTAT 181
||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||
Sbjct 1 AAGATGACGTCTCGTTTTTTCGCTCAGGGTGGAAGTGAAAGTGAAGATGAGAGTGATTAT 60
Query 182 GAGGTAGAGGTTAATGAGGTTCAGAATGATGACGTCAATAACCGTTACCTTCAAAGTGGT 241
|| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 61 GAAGAAGAGGTTAATGAGGTTCAGAATGACGACGTCACTAACCGTTACCTTCAAAGTGGT 120
Query 242 AGTGAGGATGATGAT-GATACT-GATACGAAACGTGTGGTTAAGCCTGCTAAGGATAAAC 299
||||||||||| | |||| | ||||| |||||||||||||||||||| || |||||||
Sbjct 121 AGTGAGGATGA-CTTGGATA-TCGATACCAAACGTGTGGTTAAGCCTGCCAAAGATAAAC 178
Query 300 GTTTTGAGGAGATGACCTACACTGTTGATCAGATGAAGAATGCTATGAAGATCAATGATT 359
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 179 GTTTTGAGGAGATGACCTACACTGTTGAGCAGATGAAGAATGCTATGAAGATTAATGATT 238
Query 360 GGGTCAGCCTTCAAGAAAACTTTGATAAGGTTAACAAACAGCTTGAGAAGGTTATGAGGA 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGGTTAGCCTTCAAGAAAACTTTGATAAGGTTAACAAACAGCTTGAGAAGGTTATGAGGA 298
Query 420 TTACTGAGGCTGTGAAGCCTCCTACCTTGTATATCAAGACGCTTGTTATGTTGGAGGATT 479
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 TTACTGAGGCTGTCAAGCCTCCTACCTTGTATATCAAGACTCTTGTTATGTTGGAGGATT 358
Query 480 TCTTGAATGAAGCTCTTGCCAATAAGGAAGCCAAGAAGAAGATGAGTACTAGTAACTCCA 539
|||||| |||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 359 TCTTGATTGAAGCCCTTGCGAATAAGGAAGCCAAGAAGAAGATGAGCACTAGTAACTCCA 418
Query 540 AGGCTTTGAACTCAATGAAACAGAAATTGAAGAAGAACAATAAGTTGTACGAAGACGATA 599
||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct 419 AGGCTTTGAACTCTATGAAACAGAAACTGAAGAAGAACAATAAGCTGTACGAAGATGATA 478
Query 600 TCAACAAGTATCGTGAGGCTCCAGAAGTTGAGGAAGAGAAACAACCTGAAgatgatgatg 659
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 479 TCAACAAATATCGTGAGTCTCCAGAAGTTGAGGAAGAGAAACAACCTGAAGATGACGACG 538
Query 660 atgat-gacgatgatgatgatgaggt-tgaagatgatg 695
|||| | ||||| ||||||||| | |||||||||||
Sbjct 539 ATGAAAGT-GATGACGATGATGAG-TCTGAAGATGATG 574
> Ahg898803 jgi|Araly1|898803|Al_scaffold_0005_2769
Length=2679
Score = 2023 bits (1095), Expect = 0.0
Identities = 1779/2102 (85%), Gaps = 75/2102 (4%)
Strand=Plus/Plus
Query 765 CTTGGGAGAAGATGCTGAGCAAAAAAGATAAGCTTTTGGAGAAGCT-AATGAATAAAGAT 823
|||||||||||||||| ||||| |||||||||||| |||||||| | || | ||||||
Sbjct 602 CTTGGGAGAAGATGCTAAGCAAGAAAGATAAGCTTATGGAGAAGTTGTAT-AGTAAAGAC 660
Query 824 CCTAAAGAGATCACTTGGGACTGGGTCAA-CAAGAAGTTCAAGGAAATTGTGGCTGCTCG 882
|||||||||||||| ||||| |||||||| ||| |||||||| ||| |||||||||| ||
Sbjct 661 CCTAAAGAGATCACATGGGAATGGGTCAACCAA-AAGTTCAAAGAAGTTGTGGCTGCCCG 719
Query 883 TGGAAAAAAGGGCACTGCTCGATTTGAGCTAGTTGATCAGCTTACGCACTTGACAAAGAT 942
||| | ||||| ||||| |||||||| || |||||||||||||| ||| |||||| |||
Sbjct 720 TGGCAGGAAGGGAACTGCACGATTTGAACTGGTTGATCAGCTTACACACCTGACAAGGAT 779
Query 943 TGCCAAGACTCCTGCACAGAAGCTTGAAATCTTGTTTAGCGTTATTTCGGCTCAGTTTGA 1002
|||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 780 TGCCAAAACTCCAGCACAGAAACTTGAAATCTTGTTTAGTGTTATTTCTGCACAGTTTGA 839
Query 1003 TGTGAATCCAGGTCTCAGCGGGCACATGCCTATCAATGTCTGGAAGAAATGCGTGCTTAA 1062
||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| |||
Sbjct 840 TGTGAATCCTGGTCTCAGCGGACACATGCCTATCAATGTCTGGAAGAAGTGTGTGAATAA 899
Query 1063 CATGCTCACCATACTGGACATTCTCGTCAAGTACAG-TAACATTGTTGTGGATGACACAG 1121
||| || || ||||| |||||||| ||||| || | |||||| ||||| |||||||| |
Sbjct 900 CATTCTTACAATACTAGACATTCTTGTCAAATA-TGATAACATCGTTGTTGATGACACGG 958
Query 1122 TTGAGCCTGATGAGAACGAAACTTCAAAGCCA-ACAGATTATGATGGAAAAATTCGGGTC 1180
|||||||||||||||| ||||||||||| ||| | ||||| |||||||||||| ||||||
Sbjct 959 TTGAGCCTGATGAGAATGAAACTTCAAAACCAGA-AGATTTTGATGGAAAAATCCGGGTC 1017
Query 1181 TGGGGAAA-TTTGGTTGCATTCTTGGAGAGGGTTGACACTGAGTTTTTCAAGAGTTTGCA 1239
|||||||| || ||||||||| |||||||| | |||||||| |||||||||||||||||
Sbjct 1018 TGGGGAAACCTT-GTTGCATTCGTGGAGAGGATAGACACTGAATTTTTCAAGAGTTTGCA 1076
Query 1240 ATGCATTGATCCTCACACCCGTGAGTATGTTGAGAGGCTAAGGGATGAGCCCATGTTCTT 1299
||||| |||||||| || ||||||||||| ||||| | || |||||||| ||||||||
Sbjct 1077 GTGCATAGATCCTCATACACGTGAGTATGTGGAGAGATTGAGAGATGAGCCGATGTTCTT 1136
Query 1300 GGCCCTTGCTCAGAACATCCAGGACTACTTTGAGCGGAT-GGGTGATTTTAAAGCTGCTG 1358
|| |||||||| |||||||||||||||||||||||| | ||||| | |||||||||||
Sbjct 1137 AGCTCTTGCTCAAAACATCCAGGACTACTTTGAGCGG-TCTGGTGACTATAAAGCTGCTG 1195
Query 1359 CAAAGGTAGCCTTAAGACGTGTTGAGGCAATATACTACAAGCCCCAGGAAGTTTATGATG 1418
||||||| |||||||||| |||||| ||| ||||||||||| ||||||||||||||||
Sbjct 1196 CAAAGGTGGCCTTAAGACAAGTTGAGTTAATTTACTACAAGCCTCAGGAAGTTTATGATG 1255
Query 1419 CAATGAGGAAATTGGCTGAG-T--TGGTGGAAG-A-A-GAAGAAG-A-A-ACTGAGGAGG 1469
| ||||||||| |||||||| | ||||||||| | | ||||||| | | | |||||||
Sbjct 1256 CCATGAGGAAACTGGCTGAGCTGGTGGTGGAAGAAGATGAAGAAGAAGATAGTGAGGAGC 1315
Query 1470 CCAAAGAGGAAAGTGGACCTCCTACTTCATTTATTGTTGTTCCGGAGGTTGTTCCCCGTA 1529
|||||||||||| ||||||| | ||||||| ||||||||||| ||||||||||| ||||
Sbjct 1316 CCAAAGAGGAAACTGGACCT-C--CTTCATTCATTGTTGTTCCAGAGGTTGTTCCTCGTA 1372
Query 1530 AGCCTACCTTCCCAGAGAGCAGCCGAGCTATGATGGATATTCTTGTGTCCCTTATCTACA 1589
||||||||||||||||||| || ||||||||||||||| ||||||| || ||||| ||||
Sbjct 1373 AGCCTACCTTCCCAGAGAGTAGTCGAGCTATGATGGATGTTCTTGTCTCTCTTATATACA 1432
Query 1590 GAA-ATGGAGATGAGCGGACCAAAGCGCGTGCGATGCTATGTGATATCAATCACCATGCT 1648
|| |||||||||| || || ||||| ||||||||| ||||||||||| |||||||||||
Sbjct 1433 -AATATGGAGATGAACGAACTAAAGCCCGTGCGATGTTATGTGATATCTATCACCATGCT 1491
Query 1649 TTAATGGACAACTTTGTGACTGCTAGAGACCTGTTGCTGATGAGTCATCTGCAAGACAAC 1708
||| |||||||||||||||| ||||| || |||||||||||||||||||||| |||||
Sbjct 1492 TTAGTGGACAACTTTGTGACAGCTAGGGATTTGTTGCTGATGAGTCATCTGCAGGACAAT 1551
Query 1709 ATCCAGCACATGGACATCTCAACACAGATTCTCTTTAACAGGACCATGGCGCAGCTTGGT 1768
|| |||||||||||||||||||| ||||| |||||||| ||| ||||||| |||||||||
Sbjct 1552 ATTCAGCACATGGACATCTCAACCCAGATCCTCTTTAATAGGTCCATGGCACAGCTTGGT 1611
Query 1769 CTTTGCGCCTTCCGGGCTGGAATGATCACTGAGTCCCATAGCTGCCTTTCCGAGCTGTAC 1828
|| ||||| ||||||| ||||||||| || ||| | || |||||||| || ||| |||||
Sbjct 1612 CTCTGCGCATTCCGGGTTGGAATGATTACAGAGGCTCACAGCTGCCTCTCTGAGTTGTAC 1671
Query 1829 TCTGGTCAAAGAGTGAGAGAGTTGCTTGCCCAAGGTGTCTCGCAAAGCCGATACCATGAG 1888
||||||||||| ||| | ||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1672 TCTGGTCAAAGGGTGCGGGAGTTACTTGCTCAAGGTGTCTCGCAAAGCCGCTACCATGAG 1731
Query 1889 AAAAC-CCCGGAGCAGGAAAGGA-TGGAAAGGAGAAGACAAATGCCGTACCACATGCACT 1946
|| || ||| |||||||||| || |||| |||||| |||| ||||| || |||||||||
Sbjct 1732 AAGACTCCC-GAGCAGGAAA-GATTGGAGAGGAGACGACAGATGCCATATCACATGCACA 1789
Query 1947 TAAACCTTGAGCTTCTGGAGGCAGTTCATCTCATCTGTGCCATGCTTCTTGAAGTCCCAA 2006
|||||||||||||||| || || ||||||||||||||||||||||| || || ||||| |
Sbjct 1790 TAAACCTTGAGCTTCTCGAAGCTGTTCATCTCATCTGTGCCATGCTGCTAGAGGTCCCTA 1849
Query 2007 ACATGGCTGCAAACTCGCACGATGCCAAACGC-AGAGTGATTAGCAAGAATTTCCGCCGC 2065
||||||| || || || ||||||| ||||||| || |||||||||||||||||||| |||
Sbjct 1850 ACATGGCAGCCAATTCTCACGATGTCAAACGCAAG-GTGATTAGCAAGAATTTCCGTCGC 1908
Query 2066 CTGCTCGAGATCAGTGAAAGGCAAGCATTCACTGCACCGCCTGAGAATGTACGTGACCAT 2125
||||||||||||||||| ||||||||||||||||| || |||||||| || |||||||||
Sbjct 1909 CTGCTCGAGATCAGTGAGAGGCAAGCATTCACTGCTCCTCCTGAGAACGTTCGTGACCAT 1968
Query 2126 GTCATGGCAGCCACCAGAGCCCTGACCAAAGGAGATTTCCAGAAGGCGTTTGAAGTTTTG 2185
| ||||||||| ||| |||| ||||| |||||||| ||||| ||||| ||||||||| ||
Sbjct 1969 GCCATGGCAGCAACCCGAGCTCTGACTAAAGGAGACTTCCAAAAGGCTTTTGAAGTTGTG 2028
Query 2186 AACTCTCTTGAGGTCTGGAGGCTGCTCAAGAACCGTGACAGCATCCTTGACATGGTGAAG 2245
|| |||||||| ||||||| ||| ||||||| || || | ||||||||| |||||||||
Sbjct 2029 AAGTCTCTTGATGTCTGGAAACTGTTCAAGAATCGGGAAACCATCCTTGATATGGTGAAG 2088
Query 2246 GATAGGATCAAAGAAGAGGCTCTAAGGACTTACCTATTCACATACTCAAGC-TCTTATGA 2304
||||||||||||||||||||| | ||||||||||| ||||||||||| || || || ||
Sbjct 2089 GATAGGATCAAAGAAGAGGCTTTGAGGACTTACCTCTTCACATACTCG-GCCTCCTACGA 2147
Query 2305 GTCCTTGAGTCTTGATCAGCTGGCCAAAATGTTTGA-CGTCTCTGAGC-CGCAGGTCCAC 2362
|||| | ||||| |||||||| ||||| |||||||| | |||||||| | || ||||||
Sbjct 2148 GTCCCTAAGTCTAGATCAGCTTGCCAAGATGTTTGATC-TCTCTGAGAAC-CAAGTCCAC 2205
Query 2363 AGCATTGTGAGTAAGATGATGATTAATGAGGAACTGCATGCAAGCTGGGATCAGCCAACA 2422
||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| || || |||
Sbjct 2206 AGCATCGTGAGCAAGATGATGATCAATGAAGAACTCCATGCAAGCTGGGACCAACCTACA 2265
Query 2423 CGATGCATCGTCTTCCATGAAGTGCAACACAGCAGATTACAATCATTGGCTTTCCAGTTA 2482
|| ||||| |||| || || || || |||| ||| || ||| | ||||| |||||||||
Sbjct 2266 CGTTGCATAATCTTTCACGATGTCCAGCACACCAGGTTGCAAACCTTGGCGTTCCAGTTA 2325
Query 2483 ACGGAGAAACT--CTCGATT-TTGGCAGAAAGCAATGAGAGGGCAATGGAATCTAGAACC 2539
|| |||||||| || | || ||| | || ||||| || || |||||||| |||| |||
Sbjct 2326 ACTGAGAAACTTGCT-G-TTCTTG-CGGAGAGCAACGAAAGAGCAATGGAGGCTAGGACC 2382
Query 2540 GGTGGAGGTGGTCTGGATCTGAGTTCAAGGAGAAGGGACAACAATCAGGACTATGCAGGA 2599
||||| |||||| ||||||| || ||||||||||| ||||||||||| || ||||||||
Sbjct 2383 GGTGGTGGTGGTGTGGATCTAAGCTCAAGGAGAAGAGACAACAATCAAGAATATGCAGGG 2442
Query 2600 GCAGCATCAGGTGGTGGTGGATATTGGCAAGACAAGGCGAATTACGGA-CAAGGAAGACA 2658
| |||| |||||||| | | ||||||||||| | |||| | |||||||||||
Sbjct 2443 GGAGCA---GGTGGTGGA--A-AGTGGCAAGACAATATGTCTTACA-ATCAAGGAAGACA 2495
Query 2659 AGG---CAA---C------AGATCAGGTTATGGTGG-AGGAAGATCATCTGGACAA--AA 2703
||| ||| | ||||| ||||||||||| | | ||||||||||||| ||
Sbjct 2496 AGGTTACAATGGCGGTGGTAGATCTGGTTATGGTGGTAACA-GATCATCTGGACATGCAA 2554
Query 2704 TG-GTCAGTGGTCAGGGCAGAACCGAGG-AG-GA-GGGTATGCAGGAAGAGTTGGTTCAG 2759
| | | |||||||| || || ||||| || | ||||||| |||||||| ||| |||
Sbjct 2555 -GAGAC--TGGTCAGGTCAAAATCGAGGGAGTGGTGGGTATGGAGGAAGAGGTGGAACAG 2611
Query 2760 GAAACAGAGGTATGCAGATGGATGGCTCAAGCCGTATGGTGAGTCTTAACCGAGGTGTTC 2819
| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 2612 GGAACAGAGGAATGCAGATGGATGGCACAAGCCGTATGGTAAGTCTTAACCGAGGTGTTC 2671
Query 2820 GT 2821
||
Sbjct 2672 GT 2673
> Ahg905323 jgi|Araly1|905323|Al_scaffold_0003_2451
Length=2376
Score = 1535 bits (831), Expect = 0.0
Identities = 1436/1717 (84%), Gaps = 85/1717 (5%)
Strand=Plus/Plus
Query 917 GATCAGCTTACGCACTTGACAAAGATTGCCAAGACTCCTGCACAGAAGCTTGAAATCTTG 976
||| |||||| | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 667 GATAAGCTTATGGACTTGACAAAGATTGCCAAGACTCCTGCACAGAAGCTTGTAATCTTG 726
Query 977 TTTAGCGTTATTTCGGCTCAGTTTGATGTGAATCCAGGTCTCAGCGGGCACATGCCTATC 1036
|||||||||||||| || |||||| ||| | |||||||| |||||||||||
Sbjct 727 TTTAGCGTTATTTCAGCAGAGTTTG--GTG------G-TCTCAGCGAATACATGCCTATC 777
Query 1037 AATGTCTGGAAGAAATGCGTGCTTAACATGCTCACCATACTGGACATTCTCGTCAAGTAC 1096
|||||||||||||||| ||| |||||||||| |||||||| |||||| | |||||||||
Sbjct 778 GATGTCTGGAAGAAATGTGTGGTTAACATGCTTACCATACTTGACATTATTGTCAAGTAC 837
Query 1097 -AGTAACATT---GTTGTGGATGACACAGTTGAGCCTGATGAGAACGAAACTTCAAAGCC 1152
| ||||||| ||||||||||| || | ||| ||||||||||| ||||||||||||||
Sbjct 838 TA-TAACATTAATGTTGTGGATGATACCGCTGAACCTGATGAGAAGGAAACTTCAAAGCC 896
Query 1153 AACAGATTATGATGGAAAAATTCGGGTCT-GGGGAAATTTGGTTGCATTCTTGGAGAGGG 1211
| ||||| ||||||| |||||| |||| |||||| ||||||||||||||| ||||||
Sbjct 897 AGTGGATTACGATGGAACAATTCGTGTCTCGGGGAA-TTTGGTTGCATTCTTAGAGAGGA 955
Query 1212 TTGACACTGAGTTTTTCAAGAGTTTGCAATGCATTGATCCTCACACCCGTGAGTATGTTG 1271
|||| || |||||||||||| ||||||| ||||| |||||||||||| ||||||||| |
Sbjct 956 TTGAGACAGAGTTTTTCAAGGGTTTGCAGTGCATAGATCCTCACACCAATGAGTATGTAG 1015
Query 1272 AGAGGCT-AAGGGATGAGCCCATGTTCTTGGCCCTTGCTCAGAACATCCAGGACTACTTT 1330
|||| | || | ||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1016 AGAGATTGAAAG-ATGAGCCTATGTTCTTGGCTCTTGCTCAGAAAATCCAAGACTACTTG 1074
Query 1331 GAGCGGATG-GGTGATTTTAAAGCTGCTGCAAAGGTAGCCTTAAGACGT-GTTGAGGCAA 1388
||||||| | || |||| |||| |||| ||||||||||||||| || | |||||| |||
Sbjct 1075 GAGCGGA-GCGGCGATTACAAAGGTGCTTCAAAGGTAGCCTTAATAC-TAGTTGAGTCAA 1132
Query 1389 TATACTACAAGCCCCAGGAAGTTTATGATGCAATGAGGAAATTGGCTGAGTTGGTGGAAG 1448
| || |||||||| || ||||||| |||||| |||| |||| ||||||| | | |||
Sbjct 1133 TCTATTACAAGCCTCAAGAAGTTTTTGATGCTATGAAGAAAATGGCTGA-T-G----AAG 1186
Query 1449 AAGAAGAAGAAACTGAGGAGGCCAAAGAGGAAAGTGGACCTCCTACTTCATTTATTGTTG 1508
|| | |||||||| |||||| || |||||||| |||||| ||||||
Sbjct 1187 AA-AT--------TGAGGAGGGCAAAGA--AA-GTGGACCT---ACTTCACAGATTGTT- 1230
Query 1509 TTCCGGAGGTTGTTCCCCGTAAGCCTACCTTCCCAGAGAGCAGCCGAGCTATGATGGATA 1568
|| | | |||||||||||||| ||| ||||||||| |||||||||||||
Sbjct 1231 --CC-----T----C---GTAAGCCTACCTTCGCAGGGAGCAGCCGCGCTATGATGGATA 1276
Query 1569 TTCTTGTGTCCCTTATCTACAGAAATGGAGATGAGCGGACCAAAGCGC-GTGCGATGCTA 1627
|| | ||| ||||||||| |||||||||||| || ||||| | | | || ||||||
Sbjct 1277 CACTCATATCCTTTATCTACACAAATGGAGATGAAAGGGCCAAATC-CAGAGCAATGCTA 1335
Query 1628 TGTGATATCAATCACCATGCTTTAATGGACAACTTTGTGACTGCTAGAGACCTGTTGCTG 1687
||||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 1336 TGTGATATCTATCAACATGCTTTAATGGATAACTTTGTGACTGCTAGAGACTTGTTGTTG 1395
Query 1688 ATGAGTCATCTGCAAGACAACATCCAGCACATGGACATCTCAACACAGATTCTCTTTAAC 1747
||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 1396 ATGAGTCATCTACAAGACAACATTCAACACATGGACATTTCAACACAGATTCTCTTTAAC 1455
Query 1748 AGGACCATGGCGCAGCTTGGTCTTTGCGCCTTCCGGGCTGGAATGATCACTGAGTCCCAT 1807
||||| ||||| || ||||||||||||||||| |||| ||||||||| | |||||| |||
Sbjct 1456 AGGACAATGGCACAACTTGGTCTTTGCGCCTTTCGGGTTGGAATGATAAATGAGTCACAT 1515
Query 1808 AGCTGCCTTTCCGAGCTGTACTCTGGTCAAAGAGTGAGAGAGTTGCTTGCCCAAGGTGTC 1867
|||||||| || ||||||||||||||||| |||||||| ||||| || | ||||||||||
Sbjct 1516 AGCTGCCTCTCTGAGCTGTACTCTGGTCATAGAGTGAGGGAGTTTCTCGGCCAAGGTGTC 1575
Query 1868 TCGCAAAGCCGATACCATGAGAAAACCCCGGAGCAGGAAAGGA-TGGAAAGGAGAAGACA 1926
||| ||| ||| |||| ||||| || | |||||| | | |||| |||||||||||
Sbjct 1576 TCGAAAAATCGAGACCACGAGAAGACAACAGAGCAG-ATTCTAATGGAGAGGAGAAGACA 1634
Query 1927 AATGCCGTACCACATGCACTTAAACCTTGAGCTTCT-GGAGGCAGTTCATCTCATCT-GT 1984
||| ||||||||||||||| ||||||| ||||| || |||||| ||| |||| | || ||
Sbjct 1635 AATACCGTACCACATGCACATAAACCTCGAGCT-CTTGGAGGCTGTTTATCTTA-CTTGT 1692
Query 1985 GCCATGCTTCTTGAAGTCCCAAACATGGCTGCAAACTCGCACGATGCCAAACGCAGAGT- 2043
|||||||| |||||||||||||||||||| ||||||||||| |||||||||| || | |
Sbjct 1693 GCCATGCTACTTGAAGTCCCAAACATGGCAGCAAACTCGCATGATGCCAAACACAAA-TC 1751
Query 2044 GATTAGCAAGAAT-TTCCGCCGCCTGCTCGAGATCAGTGAAAGGCAAGCATTCACTGCAC 2102
| ||||||||||| || | |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1752 GGTTAGCAAGAATATTT-GTCGCCTGCTCGAGATCAGTGAGAGGCAAGCGTTCACTGCAC 1810
Query 2103 CGCCTGAGAA-TGTACGTGACCATGTCATGGCAGCCACCAGAGCCCTGACCAAAGG-AGA 2160
||||||| || | |||||||||||||||||||||| ||||||||| |||||||||| | |
Sbjct 1811 CGCCTGA-AACTATACGTGACCATGTCATGGCAGCAACCAGAGCCTTGACCAAAGGGAAA 1869
Query 2161 TTTCCA-GAAGGCGTTTGAAGTTTTGAACTCTCTTGAGGTCTGGAGGCTGCTCAAGAACC 2219
|| ||| |||| ||||| |||||||||||||||||| |||||||| ||| |||||||||
Sbjct 1870 TT-CCAAGAAG-CGTTTTCAGTTTTGAACTCTCTTGATGTCTGGAGACTGTTCAAGAACC 1927
Query 2220 GTGACAGCATCCTTGACATGGTGAAGGATAGGATCAAAGAAGAGGCTCTAAGGACTTACC 2279
| |||||| |||| | |||||||| | ||||||||| |||| ||||||||||||||| |
Sbjct 1928 GCGACAGCGTCCTCAATATGGTGAAAGCTAGGATCAAGGAAGTGGCTCTAAGGACTTATC 1987
Query 2280 TATTCACATACTCAAGCTC-T--TATGAGTCCTTGAGTCTTGATCAGCTGGCCAAAATGT 2336
||||||||||||||||||| | ||| |||| || ||||||||| |||| ||||||||||
Sbjct 1988 TATTCACATACTCAAGCTCCTACTATAAGTCATTAAGTCTTGATGAGCTAGCCAAAATGT 2047
Query 2337 TTGACGTCTCTGAGCCGCAGGTCCACAGCATTGTGAGTAAGATGATGATTAATGAGGAAC 2396
||||| |||||||| | |||||||| ||||||||||| ||||||||||| || ||||| |
Sbjct 2048 TTGACATCTCTGAGTCACAGGTCCATAGCATTGTGAGCAAGATGATGATCAACGAGGAGC 2107
Query 2397 TG-CATGCAAGCTGGGATCAGCCAACAC-GATGCATCGTCTTCCATGAAGTGCAACACAG 2454
| | ||||| ||||| |||||||| | | |||||| ||||||||||||||||||| |
Sbjct 2108 TTAC-TGCAAAATGGGACCAGCCAACTCAG-TGCATCATCTTCCATGAAGTGCAACATAA 2165
Query 2455 CAGATTACAATCATTGGCTTTCCAGTTAACGGAGAAA-CTCTCGATTTTGGCAGAAAGCA 2513
|||||||||||| |||||||| ||| |||| || ||| ||||| | ||| ||||||||||
Sbjct 2166 CAGATTACAATCTTTGGCTTTTCAGATAACCGA-AAAGCTCTCTACTTTAGCAGAAAGCA 2224
Query 2514 ATGAGAGGGCAATGGAATCTAGAACCGGTGGAGGTGGTCTGGATCTGAGTTCAAGGAGAA 2573
| || || |||||||| ||||||| ||||| | |||||| ||| ||||||||||||| |
Sbjct 2225 ACGAAAGTGCAATGGAGTCTAGAAATGGTGGTGCTGGTCTTGATATGAGTTCAAGGAGGA 2284
Query 2574 GGGACAACAATCAGGACTATGCAGGAGCAGCATCAGG 2610
||||||||| |||||||||||||| ||||||||||||
Sbjct 2285 GGGACAACAGTCAGGACTATGCAGCAGCAGCATCAGG 2321
Score = 250 bits (135), Expect = 5e-65
Identities = 294/367 (80%), Gaps = 25/367 (7%)
Strand=Plus/Plus
Query 263 GATACGAAACGTGTGGTTAAGCC-TGCTAAGGATAAACGTTTTGAGGAGATGACCTACAC 321
||||| ||||||||||||||||| | || |||||| ||||||| ||||||||| ||||
Sbjct 121 GATACAAAACGTGTGGTTAAGCCAAG-AAAAGATAAATGTTTTGAAGAGATGACCAACAC 179
Query 322 TGTTGATCAGATGAAGAATGCTATGAAGATCAATGATTG-GGTCAGCCTT-CAAGAAAAC 379
| | || | |||||| |||| ||||| ||||||||||| | | | ||| |||| ||||
Sbjct 180 TATAGAGAATATGAAGCATGCCATGAACATCAATGATTGTGTTTA--CTTGCAAG-AAAC 236
Query 380 -TTTGATAAGGTTAACAAACAGCTTGAGAAGGTTATGAGGATTACTGAGGCTGTGAAGCC 438
||||| || | |||||||| |||||||| ||||||| ||||||| || |||||||| |
Sbjct 237 GTTTGAGAAACTCAACAAACATCTTGAGAAAGTTATGAAGATTACTAAGTCTGTGAAGGC 296
Query 439 TCCTACCTTGTATATCAAGACGCTTGT-TATGTTGGAGGATTTCTTGAATGAAGCTCTTG 497
|| || ||||||||||| || ||||| | ||||||| ||||||||||||||| |
Sbjct 297 GCCGACTTTGTATATCAAAACCCTTGTGT-TGTTGGAAGATTTCTTGAATGAA------G 349
Query 498 CCAATAAGGAAGCCAAGAAGAAGATGAGTACTAGTAACTCCAAGGCTTTGAACTCAATGA 557
|| | ||| ||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 350 ---AT-A--AAG-TAAG-A-AAGATGAGTACTAGTAACTCCAAGGCTTTTAACTCAATGA 400
Query 558 AACAGAAATTGAAGAAGAACAATAAGTTGTACGAAGACGATATCAACAAGTATCGTGAGG 617
||||||| ||||||||||||||| | |||| |||| |||||||| | || | | |||
Sbjct 401 GACAGAAACTGAAGAAGAACAATATGCAGTACCAAGAAGATATCAATAGGTTTAGGGAGT 460
Query 618 CTCCAGA 624
|||||||
Sbjct 461 CTCCAGA 467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114537366715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5