BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56160.1 Length=1600 Score E Sequences producing significant alignments: (Bits) Value Ahg486057 jgi|Araly1|486057|fgenesh2_kg.5__2049__AT3G56160.1 1736 0.0 > Ahg486057 jgi|Araly1|486057|fgenesh2_kg.5__2049__AT3G56160.1 Length=1336 Score = 1736 bits (940), Expect = 0.0 Identities = 1048/1100 (95%), Gaps = 7/1100 (1%) Strand=Plus/Plus Query 243 TCTTGGTGGTGACGGAGGCATTTCAGCTTCAGCTCAAAGATTAT-ATTTTGGCAAGGAAT 301 ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| Sbjct 195 TCTTGGTGGTGACGGAGCCATTTCAGCTTCAGCTCAAAGATT-TCATTTTGGCAAGGAAT 253 Query 302 TGCTGAGTTTTGCTTCAGATAATTTCTTGCCTCTAGCTCTTGTTAGTGGAGTGGGGTTGG 361 | ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 254 TTATGAGTTTTGTTTCAGATAATTTCTTGCCTCTTGCTCTTGTTAGTGGAGTGGCTTTGG 313 Query 362 GCTTTGCAAATCCGACTCTAGGCTGTCTTGCAGACAAGTACTCTTTCACTAAGATCAGCA 421 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 314 GCTTTGCAAATCCAACTCTAGGCTGTCTTGCAGACAAATACTCTTTCACTAAGATCAGCA 373 Query 422 CATGCGGGATATTTATTATATCAGGGTTGACTTTACGTACCGAAGCGATTGGTGCTGCTG 481 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 374 CATGTGGGATATTTATTATATCAGGGTTGACTTTACGTACTGAAGCGATTGGTGCTGCTG 433 Query 482 TCAAAGGGTGGCCTCTTGGACTCTTTGGGCTAATCTCTATTTTGTTGCTCACTCCATCCT 541 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 434 TCAAAGGATGGCCTCTTGGAGTCTTTGGGCTAATCTCTATTTTGTTGCTCACTCCATCCT 493 Query 542 TCTCAAGGCTAATTATGTTGGTCCAACTCCAACCTCGTGAACTTGTTACAGGGCTGGGTA 601 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 494 TCTCAAGGCTAATTATGCTGGTCCAACTCCAACCTCGTGAACTTGTTACAGGGCTGGGTA 553 Query 602 TATTTTGCTGTATGCCAACCACCTTATCAAGTGGTGTTGCCCTTACTCACCTTGCTGGTG 661 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 554 TATTTTGCTGTATGCCAACTACCTTATCAAGTGGTGTTGCCCTTACTCACCTTGCTGGTG 613 Query 662 GTAATGCTGCTCTTGCTCTTGCTGTGACAGTGGCATCTAACTTATTAGGAATTTTAACTA 721 | |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 614 GCAATGCTGCTCTTGCTCTTGCTGTGACAGTGGCGTCTAACTTGTTAGGAATTTTAACTA 673 Query 722 TTCCATTTTGGGTATCAAGATACATAGCTGGGGGAGTAGGGGTTTCGTTTCCTACTGACC 781 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 674 TTCCATTTTGGGTATCAAGATACATAGCCGGGGGAGTTGGGGTTTCGTTTCCTACTGACC 733 Query 782 AACTATTCAGAAGTCTTATAGTTACTCTGTTAATTCCTTTAATCATTGGCAAGGTTATTC 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 AACTATTCAGAAGTCTTATAGTTACTCTGTTAATTCCTTTAATCATTGGCAAGGTTATTC 793 Query 842 GAGAATCATTCAAAGGTTTCGCAAACTTTGTTGACAATAACCGTAAACTCTTTTCGAAAA 901 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 GAGAATCATTTAAAGGTTTCGCAAACTTTGTTGACAATAACCGTAAACTCTTTTCGAAAA 853 Query 902 TCAACGCAATCTGCCTCAGTTTGGTGCCATGGATCCAAGTGAGCAGGTCAAGATCACTGC 961 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 854 TCAATGCAATCTGCCTCAGTTTGGTGCCATGGATCCAAGTGAGCAGGTCAAGATCACTGC 913 Query 962 TACTATCCGTTCAA-CCTAAGGT-TTTCCTTGCAGCAGTTGGCATTGGAATATTGCTGCA 1019 ||||||||||| || |||||||| |||| |||| || ||||||||||||||||||||||| Sbjct 914 TACTATCCGTT-AAGCCTAAGGTGTTTC-TTGCTGCTGTTGGCATTGGAATATTGCTGCA 971 Query 1020 TCTTTCTCTACTAGCATTCAATGCTGTTTCAATCCGCATCCTCTCCGGTCTTACAGGTGG 1079 ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| Sbjct 972 TCTTTCTCTACTAGCATTCAATGCTGTTTCAATCCGCATCCTCTCGGGTGTTTCAGGTGG 1031 Query 1080 TAGCAAGAGCTCCAAGGAAAACAGCACTGCAGTTTTGCTCGTTTCAAGCCAGAAAACATT 1139 ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1032 TAGTAAGAACTCCAAGGAAAACAGCACTGCAGTCTTGCTCGTTTCAAGCCAGAAAACATT 1091 Query 1140 ACCGGTAATGGTGGCGGTAGTAGAGCAATTAGGAGGTGCATTTGGTGAGACAGGGCTATT 1199 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1092 ACCTGTAATGGTGGCGGTAGTAGAGCAATTAGGAGGTGCATTTGGTGAGACAGGGCTTTT 1151 Query 1200 GGTTCTTCCTTGTGTAGCTGCACACCTGAACCAGATCATGATTGATTCAGTTCTTGTCAA 1259 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1152 GGTTCTTCCATGTGTAGCTGCACACCTAAACCAGATCATGATTGATTCAGTTCTTGTCAA 1211 Query 1260 CTTATGGCTCCGGAGAGGAAAAGATACTTCGACTAAAGTAAAGACAGCTTgagagagaga 1319 ||||||||||||||| || ||||||||||||||| ||||||||||| ||||||| | | Sbjct 1212 CTTATGGCTCCGGAGGGGTAAAGATACTTCGACTGGTGTAAAGACAGCCTGAGAGATATA 1271 Query 1320 gagagagaTAGAAAGCAATG 1339 || ||| || |||| ||||| Sbjct 1272 GAAAGATAT-GAAACCAATG 1290 Score = 235 bits (127), Expect = 7e-61 Identities = 155/169 (92%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1 ATGGCGATAGCTAGTACCCTGGCTTCAACCCAAAACCCCTTTCTATGTCTCCGTCAACCA 60 |||||||||||||||| ||||||||||||||||||||||||| || |||| |||||||| Sbjct 1 ATGGCGATAGCTAGTATCCTGGCTTCAACCCAAAACCCCTTTTTACGTCTAAGTCAACCA 60 Query 61 CCGTCTCCGGGGAACCGCTCCGTCGTCTTCCGTCGCTGTCAAGACCCCTGTGGTAGACGA 120 || ||||||| || |||||||||||||||||| |||| || ||| |||||||| |||||| Sbjct 61 CCATCTCCGGTGAGCCGCTCCGTCGTCTTCCGCCGCTATCTAGAGCCCTGTGGCAGACGA 120 Query 121 TGGATTTCCAGATCCATTAGAGCATGCCAACCTTCCGACAAGGTCTCTG 169 |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGGATTCCCAGATCCATTAGAGCATGCCAACCTTCCGACAAGGTCTCTG 169 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59954045630 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5