BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56160.1
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486057 jgi|Araly1|486057|fgenesh2_kg.5__2049__AT3G56160.1 1736 0.0
> Ahg486057 jgi|Araly1|486057|fgenesh2_kg.5__2049__AT3G56160.1
Length=1336
Score = 1736 bits (940), Expect = 0.0
Identities = 1048/1100 (95%), Gaps = 7/1100 (1%)
Strand=Plus/Plus
Query 243 TCTTGGTGGTGACGGAGGCATTTCAGCTTCAGCTCAAAGATTAT-ATTTTGGCAAGGAAT 301
||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 195 TCTTGGTGGTGACGGAGCCATTTCAGCTTCAGCTCAAAGATT-TCATTTTGGCAAGGAAT 253
Query 302 TGCTGAGTTTTGCTTCAGATAATTTCTTGCCTCTAGCTCTTGTTAGTGGAGTGGGGTTGG 361
| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 254 TTATGAGTTTTGTTTCAGATAATTTCTTGCCTCTTGCTCTTGTTAGTGGAGTGGCTTTGG 313
Query 362 GCTTTGCAAATCCGACTCTAGGCTGTCTTGCAGACAAGTACTCTTTCACTAAGATCAGCA 421
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 314 GCTTTGCAAATCCAACTCTAGGCTGTCTTGCAGACAAATACTCTTTCACTAAGATCAGCA 373
Query 422 CATGCGGGATATTTATTATATCAGGGTTGACTTTACGTACCGAAGCGATTGGTGCTGCTG 481
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 374 CATGTGGGATATTTATTATATCAGGGTTGACTTTACGTACTGAAGCGATTGGTGCTGCTG 433
Query 482 TCAAAGGGTGGCCTCTTGGACTCTTTGGGCTAATCTCTATTTTGTTGCTCACTCCATCCT 541
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 434 TCAAAGGATGGCCTCTTGGAGTCTTTGGGCTAATCTCTATTTTGTTGCTCACTCCATCCT 493
Query 542 TCTCAAGGCTAATTATGTTGGTCCAACTCCAACCTCGTGAACTTGTTACAGGGCTGGGTA 601
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TCTCAAGGCTAATTATGCTGGTCCAACTCCAACCTCGTGAACTTGTTACAGGGCTGGGTA 553
Query 602 TATTTTGCTGTATGCCAACCACCTTATCAAGTGGTGTTGCCCTTACTCACCTTGCTGGTG 661
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TATTTTGCTGTATGCCAACTACCTTATCAAGTGGTGTTGCCCTTACTCACCTTGCTGGTG 613
Query 662 GTAATGCTGCTCTTGCTCTTGCTGTGACAGTGGCATCTAACTTATTAGGAATTTTAACTA 721
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 614 GCAATGCTGCTCTTGCTCTTGCTGTGACAGTGGCGTCTAACTTGTTAGGAATTTTAACTA 673
Query 722 TTCCATTTTGGGTATCAAGATACATAGCTGGGGGAGTAGGGGTTTCGTTTCCTACTGACC 781
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 674 TTCCATTTTGGGTATCAAGATACATAGCCGGGGGAGTTGGGGTTTCGTTTCCTACTGACC 733
Query 782 AACTATTCAGAAGTCTTATAGTTACTCTGTTAATTCCTTTAATCATTGGCAAGGTTATTC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AACTATTCAGAAGTCTTATAGTTACTCTGTTAATTCCTTTAATCATTGGCAAGGTTATTC 793
Query 842 GAGAATCATTCAAAGGTTTCGCAAACTTTGTTGACAATAACCGTAAACTCTTTTCGAAAA 901
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 GAGAATCATTTAAAGGTTTCGCAAACTTTGTTGACAATAACCGTAAACTCTTTTCGAAAA 853
Query 902 TCAACGCAATCTGCCTCAGTTTGGTGCCATGGATCCAAGTGAGCAGGTCAAGATCACTGC 961
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 TCAATGCAATCTGCCTCAGTTTGGTGCCATGGATCCAAGTGAGCAGGTCAAGATCACTGC 913
Query 962 TACTATCCGTTCAA-CCTAAGGT-TTTCCTTGCAGCAGTTGGCATTGGAATATTGCTGCA 1019
||||||||||| || |||||||| |||| |||| || |||||||||||||||||||||||
Sbjct 914 TACTATCCGTT-AAGCCTAAGGTGTTTC-TTGCTGCTGTTGGCATTGGAATATTGCTGCA 971
Query 1020 TCTTTCTCTACTAGCATTCAATGCTGTTTCAATCCGCATCCTCTCCGGTCTTACAGGTGG 1079
||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 972 TCTTTCTCTACTAGCATTCAATGCTGTTTCAATCCGCATCCTCTCGGGTGTTTCAGGTGG 1031
Query 1080 TAGCAAGAGCTCCAAGGAAAACAGCACTGCAGTTTTGCTCGTTTCAAGCCAGAAAACATT 1139
||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1032 TAGTAAGAACTCCAAGGAAAACAGCACTGCAGTCTTGCTCGTTTCAAGCCAGAAAACATT 1091
Query 1140 ACCGGTAATGGTGGCGGTAGTAGAGCAATTAGGAGGTGCATTTGGTGAGACAGGGCTATT 1199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1092 ACCTGTAATGGTGGCGGTAGTAGAGCAATTAGGAGGTGCATTTGGTGAGACAGGGCTTTT 1151
Query 1200 GGTTCTTCCTTGTGTAGCTGCACACCTGAACCAGATCATGATTGATTCAGTTCTTGTCAA 1259
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1152 GGTTCTTCCATGTGTAGCTGCACACCTAAACCAGATCATGATTGATTCAGTTCTTGTCAA 1211
Query 1260 CTTATGGCTCCGGAGAGGAAAAGATACTTCGACTAAAGTAAAGACAGCTTgagagagaga 1319
||||||||||||||| || ||||||||||||||| ||||||||||| ||||||| | |
Sbjct 1212 CTTATGGCTCCGGAGGGGTAAAGATACTTCGACTGGTGTAAAGACAGCCTGAGAGATATA 1271
Query 1320 gagagagaTAGAAAGCAATG 1339
|| ||| || |||| |||||
Sbjct 1272 GAAAGATAT-GAAACCAATG 1290
Score = 235 bits (127), Expect = 7e-61
Identities = 155/169 (92%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATAGCTAGTACCCTGGCTTCAACCCAAAACCCCTTTCTATGTCTCCGTCAACCA 60
|||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||
Sbjct 1 ATGGCGATAGCTAGTATCCTGGCTTCAACCCAAAACCCCTTTTTACGTCTAAGTCAACCA 60
Query 61 CCGTCTCCGGGGAACCGCTCCGTCGTCTTCCGTCGCTGTCAAGACCCCTGTGGTAGACGA 120
|| ||||||| || |||||||||||||||||| |||| || ||| |||||||| ||||||
Sbjct 61 CCATCTCCGGTGAGCCGCTCCGTCGTCTTCCGCCGCTATCTAGAGCCCTGTGGCAGACGA 120
Query 121 TGGATTTCCAGATCCATTAGAGCATGCCAACCTTCCGACAAGGTCTCTG 169
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGATTCCCAGATCCATTAGAGCATGCCAACCTTCCGACAAGGTCTCTG 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59954045630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5