BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56170.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486058 jgi|Araly1|486058|fgenesh2_kg.5__2050__AT3G56170.1 1901 0.0
Ahg483096 jgi|Araly1|483096|fgenesh2_kg.4__2156__AT2G40410.2 628 2e-179
Ahg940650 jgi|Araly1|940650|scaffold_601194.1 327 1e-88
> Ahg486058 jgi|Araly1|486058|fgenesh2_kg.5__2050__AT3G56170.1
Length=1146
Score = 1901 bits (1029), Expect = 0.0
Identities = 1110/1149 (97%), Gaps = 5/1149 (0%)
Strand=Plus/Plus
Query 294 GAAAATCAAATCTAAGAAATGGGTAACGCGATTAGGTTACTCCGGAAATGCTTGAATTCT 353
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GAAAATCAAATCTAAGAAATGGGTAACGCGCTTAGGTTACTCCGGAAATGCTTGAATTCT 60
Query 354 CACGGCGTCTCCGCCTCTTCCGGCGGCGTCTCAGCTCTTTCTCGTGATCTCTTAAACTTC 413
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACGGCGTCTCTGCCTCTTCCGGCGGCGTCTCAGCTCTTTCTCGTGATCTCTTAAACTTC 120
Query 414 GAGACCACTTCTCAGGTTCCTGAGAAGCTTGGGAGTTACGTTGTGTCTTCCCAAAAGGCT 473
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGACCACTTCTCAGGTTCCGGAGAAGCTTGGGAGTTACGTTGTGTCTTCCCAAAAGGCT 180
Query 474 CAAGCAAACTGGTATAGAAAAATACTTGAGGCATGGAAGCAAGCTAAGCCTCGGCCTAAA 533
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 CAAGCAAACTGGTATCGAAAAATACTTGAGGCATGGAAGCAAGCTAAGCCTCAGCCTAAA 240
Query 534 ACTCCTGAGGAAGCCTCCAGGCTTGTTATCGCGGCTCTAAAGAACCATCAAAAAGCAGAT 593
||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 241 ACTCCTGAGGAAGCCTCTAGGCTTGTTATCGCGACTCTAAAGAACCATCTAAAAGCAGAT 300
Query 594 GTTGAGGGACTTTTGTCTTTCTATGGACTACCTTCACCTCACAATCTCGTTGAGGTCCCT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTGAGGGACTTTTGTCTTTCTATGGACTACCTTCACCTCACAATCTCGTTGAGGTCCCT 360
Query 654 ACGGAAGCTCCTGTGTCTTTACCTAAAGGAGTTCGGTTTGAGCTTAACACGCTTCCGGTG 713
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 ACGGAATCTCCTGTGTCTTTACCTAAAGGAGTTCGGTTTGAGCTTAAAACGCTTCCGGTG 420
Query 714 GATACAAAATCTGTGGCAGATGGTGATACTGTTACTGTGTATGTTAGTAGCAAAGACCCG 773
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 421 GATACAAAATCTGTGGCAGATGGAGATACCGTTACTGTGTATGTTAGTAGCAAAGACCCG 480
Query 774 CTTGTGTCATCTTCTCTTCCTAAGGACGTGAGTCTTGCAGCGGTTAAAAGAGCCAAAGCG 833
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 481 CTTGTGTCATCTTCTCTTCCTAAGGAAGTCAGTCTTGCAGCAGTTAAAAGAGCCAAAGCG 540
Query 834 CGTGAGAAGAAGAATTATACTGAAGCAGATGCACTTCACAAGACGATCATAGCTTCTGGT 893
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 CGTGAGAAGAAGAATTATACTGAAGCAGATGCACTTCACAAGACTATCATAGCTTCTGGT 600
Query 894 TACAGGATGATAAGTTTTCAGAATGAGGAAGTGCTTGCTAAAAAGTTCAGAATTAGACTA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TACAGGATGATAAGTTTTCAGAATGAGGAAGTGCTTGCTAAAAAGTTCAGAATTAGACTA 660
Query 954 AGCGGAATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAAGAGGCGCATGATGAGCTA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCGGAATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAAGAGGCGCATGATGAGCTA 720
Query 1014 CTCAAGATGGTTGAAGGGAAATGCTTGAAGGTGTTAGTATATACAGAGGATCGTTATGGA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTCAAGATGGTTGAAGGGAAATGCTTGAAGGTGTTAGTATATACAGAGGATCGTTATGGA 780
Query 1074 AGATGTGTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGATGTGTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAA 840
Query 1134 GGTCTTGCTTGGCATTATGTAGCCTATGACAAGCGTGCAGAGCTCGCAAAGTGGGAAAAT 1193
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 841 GGTCTTGCTTGGCATTATGTAGCTTACGACAAGCGTGCAGAGCTCGCAAAGTGGGAAAAT 900
Query 1194 GAGGCTAGGCAAAAGCGCGTTGGCTTGTGGGCATCTTCTAATCCAGAGAAGCCATGGGAG 1253
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAGGCTAGGCAAAAGCGTATTGGCTTGTGGGCATCTTCTAATCCAGAGAAGCCATGGGAG 960
Query 1254 TGGAGAAAGAACAAACGTGGAGGCAATTAATGATAACAAAACCAATAAAAACAACAA--T 1311
||||||||||||||||||| |||||| |||| ||||||||||||| ||||| || || |
Sbjct 961 TGGAGAAAGAACAAACGTGAAGGCAAGTAATTATAACAAAACCAAAAAAAAAAAAAAAAT 1020
Query 1312 ACAATACTATTCGATTATATGATTATTGTGAATTAAAGAACTTGTGATCTGTTGTTGTAA 1371
|||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |
Sbjct 1021 ACAATACTATTCGATTAT--GATTATTGTGAATTGT-GAACCTGTGATCTGTTGTTGTTA 1077
Query 1372 TTGTAAGAGAAGTATGTATATGTTTTATGTATTGACAAGTAtttttttGGCAATAGAGAA 1431
||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1078 TTGTAAGAGCACTATGTAAATGTTTTATGTATTGATAAGTATTTTTTTGGCAATAGAGAA 1137
Query 1432 TTTCTCTTT 1440
|||||||||
Sbjct 1138 TTTCTCTTT 1146
> Ahg483096 jgi|Araly1|483096|fgenesh2_kg.4__2156__AT2G40410.2
Length=1082
Score = 628 bits (340), Expect = 2e-179
Identities = 747/940 (79%), Gaps = 42/940 (4%)
Strand=Plus/Plus
Query 352 CTCACGGCGTCTCCGCCTCTTCCGGCGGCGTCTCAGCTCTTTCTCGTGATCTCTTAAACT 411
||||||||||||||||| | ||| || || |||||||| ||| || || || ||||
Sbjct 142 CTCACGGCGTCTCCGCCGCCACCGTTGGTGTTTCAGCTCTCGCTCACGACCTTTTCAACT 201
Query 412 TCGAGACCACTTCTCAGGTTCCTG-AGAAGCTTGGGAGTTACGTTGTGTCTTCCCA-AAA 469
|||||| |||||| |||||||||| || ||||||||| || ||| ||| | | | |||
Sbjct 202 TCGAGATCACTTCCCAGGTTCCTGAAG-GGCTTGGGAGGTATGTTCAGTCGT-CTAGAAA 259
Query 470 GGCTCAAGCAAACTGGTATAGAAAAATACTTGAGGCATGGAAGCAAGCTAAGCCTCGGCC 529
|||||||||||||||||| |||||||||||||||||||||||||||| || |||| ||
Sbjct 260 AGCTCAAGCAAACTGGTATCGAAAAATACTTGAGGCATGGAAGCAAGCAAAACCTCCACC 319
Query 530 TA-AAACTCCTGAGGAAGCCTCCAGGCTTGTTATCGCG-GCTC-TAAAGAA-CCATCAAA 585
| | || | |||||||| || |||||||| | | | || |||| || |||| |
Sbjct 320 -ACAGACAGCAGAGGAAGCTTCTAGGCTTGTCA-C-TGATATCTTAAA-AAGGAATCAGA 375
Query 586 AAGCAGATGTTGAGGGACTTTTGTCTTTCTATGGACTACCTTCACCTCACAATCTCGTTG 645
|||| |||||||||||||||||||||||||||||||| |||| |||| | ||| ||||
Sbjct 376 AAGCTGATGTTGAGGGACTTTTGTCTTTCTATGGACTCCCTTTGTCTCATACTCTAGTTG 435
Query 646 AGGTCCCTACGGAAGCTCCTGTGTCTT-TA--CCTAAAGGAGTTCGGTTT-GAGCTT-AA 700
| ||| || |||||||||||||||| | ||| |||| |||| ||| || || ||
Sbjct 436 AAGTCTCTGTTGAAGCTCCTGTGTCTTCTTTGCCTGAAGGGGTTCT-TTTCGAATTTCAA 494
Query 701 CACGCTTCCGGTGGATACAAAATCTGTGGCAGATGGTGATACTGTTACTGTGTATGTTAG 760
|| |||||||||||| ||||| ||||||||||||| || || | || |||||||| ||
Sbjct 495 -ACACTTCCGGTGGATCCAAAAGCTGTGGCAGATGGAGACACCATCACAGTGTATGTCAG 553
Query 761 TAGCAA-AGACCCGCTTGTGTCATCTTCTCTTCCTAAGG-ACGTGAGTCTTGCAGCGGTT 818
|| | ||| ||| | |||||||||| | |||| |||| | || | |||||||||||||
Sbjct 554 TA-CTTCAGAGCCGGTAGTGTCATCTTATGTTCC-AAGGGAAGTCAATCTTGCAGCGGTT 611
Query 819 AAAAGAGCCAAAGCGCGTGAGAAGAAGAATTATACTGAAGCAGATGCACTTCAC-AAGAC 877
||||||| ||||| |||||||||| |||||| | ||||||| | ||||||| || |
Sbjct 612 CAAAGAGCAAAAGCACGTGAGAAGAGGAATTACCCAAAAGCAGACGAACTTCACCAAAA- 670
Query 878 GATCATAGCTTCTGGTTACAGGATGA-TAAGTTTTCAGAATGAGGAAGTGCTTGCTAA-A 935
|||||| | ||||||||||||| | | ||| | || |||||||||||||||||||| |
Sbjct 671 GATCATTGATTCTGGTTACAGGGT-ACTAACTATTGAGAATGAGGAAGTGCTTGCTCGCA 729
Query 936 AAGTTCAGAATTAGACTAAGCGGAATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAA 995
|| ||||||||||||||||| ||||||||| |||| |||||| ||||||| | ||| |||
Sbjct 730 AA-TTCAGAATTAGACTAAGGGGAATAGATGCACCAGAGAGCCAAATGCCATTTGGGAAA 788
Query 996 GAGGCGCATGATGAGCTACTCAAGATGGTTG-AAGGGAAATGCTTGAAGGTGTTAGTATA 1054
||||| || | | ||| || ||||| |||| |||| ||| ||||||| |||||||| ||
Sbjct 789 GAGGCACAACAAGGGCTCCTTAAGATTGTTGGAAGGAAAA-GCTTGAAAGTGTTAGTTTA 847
Query 1055 TACAGAGGATCGTTATGGAAGATGTGTAGGAGATATATACTGCAATGGAAAATTTGTACA 1114
| ||| |||| ||||| |||| |||| ||| ||||||||||||| | ||||| ||
Sbjct 848 TGGAGAAGATCAATATGGGCGATGCGTAGCTGATTTATACTGCAATGGGATTTTTGTCCA 907
Query 1115 GGAAGTAATGCTAAAGAAAGGTCTTGCTTGGCATTA-TGTAGCCTATGACAAGCGTGCAG 1173
||| | ||||||||||||||| ||||| |||||||| | |||| ||||||||||| | |
Sbjct 908 GGAGGCAATGCTAAAGAAAGGGCTTGCATGGCATTACT-TAGCTTATGACAAGCGCCCGG 966
Query 1174 AGCTCGCAAAG------T---GGGAAAATGAGGCTAGGCAAAAGCGCGTTGGCTTGTGGG 1224
||||||||| | ||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 967 TTCTCGCAAAGGCAAGATTATGGGAAAAGGAGGCAAGGCAGAAGCGTATTGGCTTGTGGG 1026
Query 1225 CATCTTCTAATCCAGAGAAGCCATGGGAGTGGAGAAAGAA 1264
| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1027 CTTCTTCAAATCCAGAGAAGCCATGGGACTGGAGAAAGAA 1066
> Ahg940650 jgi|Araly1|940650|scaffold_601194.1
Length=508
Score = 327 bits (177), Expect = 1e-88
Identities = 198/208 (95%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 960 ATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAAGAGGCGCATGATGAGCTACTCAAG 1019
|||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||
Sbjct 258 ATAGATTCACCGGAGAGCAAAATGTCGTATGGAAAAGAGGCACACGATGAGCTACTCAAT 317
Query 1020 ATGGTTGAAGGGAAATGCTTGAAGGTGTTAGTATATACAGAGGATCGTTATGGAAGATGT 1079
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 318 ATGGTTGAAGGGAAATGCTTGAAGATGTTAGTTTATACAGAGGATCGTTATGGAAGACGT 377
Query 1080 GTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAAGGTCTT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAAGGTCTT 437
Query 1140 G-CTTGGCATTATGTAGCCTATGACAAG 1166
| || |||||||||||||||| ||||||
Sbjct 438 GTCT-GGCATTATGTAGCCTACGACAAG 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5