BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56180.1
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486059 jgi|Araly1|486059|fgenesh2_kg.5__2051__AT3G56180.1 1314 0.0
> Ahg486059 jgi|Araly1|486059|fgenesh2_kg.5__2051__AT3G56180.1
Length=827
Score = 1314 bits (711), Expect = 0.0
Identities = 798/837 (95%), Gaps = 17/837 (2%)
Strand=Plus/Plus
Query 1 CTTCATCATCAGGAGGATTATCAAGGGCTCT-AAATAAAGAGCCTTTCATAGTCTTTTGC 59
||||||||||| ||||||||||||||||||| ||| ||||| |||||||| ||||||||
Sbjct 1 CTTCATCATCACGAGGATTATCAAGGGCTCTCAAA-CAAGAGTCTTTCATAATCTTTTGC 59
Query 60 AAtcttcttcttcgtcttcttcttGAACT-TTATTCGAAAATGCCGAAGAATaaaaaaaC 118
|| ||||| | ||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 60 AA---TCTTC-T--TCTTCTTCTTG-A-TATTATTCGAAAATGCCGAAGAATAAAAAAAC 111
Query 119 AGAATGGCAAGTAGGAGATCCCGCGATAAGCGTAGTGAGCGATCAATTCTGTAATCCATA 178
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 112 AGAATGGCAAGTAGGAGATCCCGCAATAAGCGTAGTGAGCGATCAATTCTGTAATCCATA 171
Query 179 CCCAATGGATCTTTTGGTGAAGAGAAAAGTTCAGAATTTTTCTAAAGATTATTATGAAGT 238
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 CCCAATGGATCTTGTGGTGAAGAGAAAAGTTCAGAATTTTTCTAAAGATTATTATGAAGT 231
Query 239 GTTTGATCCAAGTGGGAATCTGCTCCTACAAATTGATGGACAAGCTTGGGGGTTTAACCG 298
||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 232 TTTTGATCCAAGTGGGAACCTGCTCTTACAAATTGATGGACAAGCTTGGGGATTTAACCG 291
Query 299 TAAAAGAGTTATGCGTGATCCAGCCGGTTTCACAATCCTCTCAATGCGTCAAAAGGGACT 358
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 292 TAAAAGAGTTATGCGTGATCCAGCCGGTTTCACAATCCTCTCAATGCGCCAAAAGGGACT 351
Query 359 TGCGTTGAAGAACAAGTGGGAAGTGCATGGAGGAGAGAGCAAAGAGAGAGAAGACTTGCT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TGCGTTGAAGAACAAGTGGGAAGTGCATGGAGGAGAGAGCAAAGAGAGAGAAGACTTGCT 411
Query 419 CTTCACGGTACAACAATCTCAAGCGGTTTCACTGAAAACATCCGTGGATGTTTTCTTGCC 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 412 CTTCACGGTACAACAATCTCAAGCGGTTTCATTGAAAACATCCGTGGATGTTTTCTTGCC 471
Query 479 GGAGAACAACAATGTCAAGAAGA-CAAACACTTGTGATTTTCATGCTTCAGGAGGATACT 537
|||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct 472 TGAGAACAACAATGTCAAGAAGAGCAA-CACTTGTGATTTCCATGCTTCAGGAGGATACT 530
Query 538 CCAATATCTCATTCAAAGTTTTCAAAGCGGATGCTCTCATCGCCGGGGTAGGGTTTACAT 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 531 CCAATATCTCATTCAAAGTTTTCAAATCGGATGCTCTCATCGCCGGGGTAGGGTTTACAT 590
Query 598 GGGGAAGTTTCTGCAAAGGGAAATATAACTTTAAGGTGAGAGTAAATCCAGAGGTTGATT 657
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 591 GGGGAAGTTTCTGCAAAGGGAAATATAATTTTAAGGTGAGAGTGAATCCAGAGGTTGATT 650
Query 658 ATGCTTTTATCATTGCTTTGCTTGTCATGGTCGATGACAACGAGAATTGGTGTTAGTATA 717
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 651 ATGCTTTTATCATTGCTTTGCTTGTTATGGTCGATGACAACGAGAACTGGTGTTAGTATA 710
Query 718 TTGTCTGTCCTCAATCTCTTTGTTTAGTGGTTCCTTTCACAATTTATTG--GT--GTATA 773
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 711 ATGTCTGTCCTCAATCTCTTTGTTTAGTGGTTCCTTTCACAATTTATTGTTGTATGTATA 770
Query 774 TGTGTTCATTTCTCAAGATATATGTATGTAAGAATATTTTTTCCATGTAATGTGCAA 830
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 771 TGTGTTCATTTCTCAAGATATATGTTTGTAAGAATATTTTTTCCATGTAACGTGCAA 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5