BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56190.1
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486060 jgi|Araly1|486060|fgenesh2_kg.5__2052__AT3G56190.1 1993 0.0
> Ahg486060 jgi|Araly1|486060|fgenesh2_kg.5__2052__AT3G56190.1
Length=1254
Score = 1993 bits (1079), Expect = 0.0
Identities = 1203/1261 (95%), Gaps = 15/1261 (1%)
Strand=Plus/Plus
Query 2 TCTGATTTTTCGCTCTCGATCGATTCTCGTCTCTCTCTCTTTCATCGCAGCGAATAATCC 61
||||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||
Sbjct 1 TCTGATTTTTCGCTCTCGATCGATTCTCG-C-CTCTCTC--TCATCGCAGCGAAT-ATCC 55
Query 62 AAATCGAAAGCAATTTCTCTCGACGAAGAAAAGAGAAG-CAATCGGAGTCTGTGGAGGTA 120
||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 56 AAATCGAAAGCAATTTCTCTCGACGAAGAAAAGAG-AGACAATCGGAGTCTGGGGAGGTA 114
Query 121 AAGAAGTACACGATC--A-----AATTTCAAGTCAGAGTTTCGGGGaaaaaaaaGGAATG 173
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 115 AAGAAGTACACGATCGGAGGTTGAATTTCAAGTCAGAGTTTCGGGGAAAAAAAAGAAATG 174
Query 174 GGGGATCATCTGGTGAGAGCTGAGGAATTCGAGAAGAAAGCTGAGAAAAAGCTCAATGGA 233
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 175 GGGGATCATCTGGTGAGAGCTGAGGAATTCGAGAAGAAAGCTGAGAAGAAGCTCAATGGA 234
Query 234 TGGGGAATATTCGGATCTAAGTACGAGGATGCTGCTGATCTGCTCGAAAAAGCAGCTAAT 293
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 235 TGGGGAATATTCGGATCTAAGTATGAGGATGCTGCTGATCTGCTCGAAAAAGCAGCTAAT 294
Query 294 TCCTATAAGCTCGCCAAATCATGGGATCAAGCTGGAAAAGCTTATCTAAAACTTGCCGAC 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCCTATAAGCTCGCCAAATCATGGGATCAAGCTGGAAAAGCTTATCTAAAACTTGCCGAT 354
Query 354 TGTCACTTAAAGTCAGATAGCAAACATGATGCTGCTAACGCCTATGCTGAGGCTGCTAAA 413
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGTCACTTAAAGTCAGACAGCAAACATGATGCTGCTAACGCCTATGCTGAGGCTGCTAAA 414
Query 414 TGCTACAAGAAAGTTGACACTAATGAGGCTGCGTCTTGCCTAGAGCGAGCGGTGAATATA 473
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 415 TGCTACAAGAAAGTTGACACAAATGAGGCTGCATCTTGCCTAGAGCGAGCAGTGAATATA 474
Query 474 TTTTGTGAGATAGGAAGGCTCAACATGGCTGCAAGATATTACAAGGAAATTGCTGAGTAT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTTTGTGAGATAGGAAGGCTCAACATGGCTGCAAGATATTACAAGGAAATTGCTGAGTAT 534
Query 534 TATGAATCTGATCAGAAGTTCGAGCAGGCTATTGCTTACTTTGAAAAGGCAGCTGAATTC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TATGAATCTGATCAGAAGTTCGAGCAGGCTATTGCTTACTTTGAAAAGGCAGCTGAATTC 594
Query 594 TTTCAGAATGAAGAAGTGACCACTTCTGCAAACCAGTGCAATCTAAAGGTTGCGCAATAT 653
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 595 TTTCAAAATGAAGAAGTGACCACTTCTGCAAACCAGTGCAATCTAAAGGTTGCACAATAT 654
Query 654 GCCGCCCAGCTGGAGCAGTATGAGAAGGCAATCAAGATTTATGAAGACATAGCACGCCAT 713
|| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 655 GCTGCACAGCTGGAGCAATATGAGAAGGCAATCAAGATTTATGAAGATATAGCACGCCAT 714
Query 714 TCACTCAACAATAACTTGCTCAAGTATGGAGTTAAGGGCCATCTTCTCACTGCTGGCATG 773
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 715 TCACTCAACAATAACTTGCTTAAGTATGGAGTTAAGGGCCATCTTCTCACTGCTGGCATG 774
Query 774 TGCCACTTATGCAAAGCCGATGTTGTTTCCATCACTAACGCTCTGGAGAAGTATCAGGAT 833
||||||||||||||||| |||||||||||||||||||| || |||||||| || ||||||
Sbjct 775 TGCCACTTATGCAAAGCTGATGTTGTTTCCATCACTAATGCGCTGGAGAAATACCAGGAT 834
Query 834 CTGGATCCAACTTTTACTGGAACACGGGAATGCAAGTTCTTAGCGGACCTTGCTTCTGCT 893
|||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 835 CTGGATCCGACTTTTTCAGGAACACGGGAATGCAAGTTCTTAGCGGATCTTGCTTCTGCT 894
Query 894 ATCGATGAAGAAGACATCGCAAAGTTCACAGATGTTGTCAAGGAGTTTGATAGCATGACT 953
|||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 895 ATCGATGAGGAAGACATTGCAAAGTTCACAGACGTTGTCAAGGAATTTGATAGCATGACT 954
Query 954 CCACTGGATTCATGGAAGACAACCATGTTGTTGAGGGTGAAGGAGAAGCTCAAGGCCAAG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CCACTGGATTCATGGAAGACAACCATGTTGTTGAGGGTGAAGGAGAAGCTCAAGGCCAAG 1014
Query 1014 GAGCTAGAGGAGGATGACCTTACATAGACATATTTATCCAGAGCGTTGCTTTTTATTCAT 1073
||||| ||||||||||||||||| || |||||| ||||||||||||||||||||| ||||
Sbjct 1015 GAGCTGGAGGAGGATGACCTTACCTAAACATATATATCCAGAGCGTTGCTTTTTAGTCAT 1074
Query 1074 TCCCGGGTTGTATTGTCACTATGTCCGTTACTTCATGTCCGACTCTTCTTTGATTTTATT 1133
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1075 TCCCGGTTTGTATTGTCACTATGTCCGTTACTTCATATCCGACTCTTCTTTGATTTTATT 1134
Query 1134 GTGTCTGGTTTTGAGTTTTAAAGTTTCTTAAGAGGTTTGGTCAAATTGGGTTTGTTTGGT 1193
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GTGTCTGGTTTTG-GTTTTAAGGTTTCTTAAGAGGTTTGGTCAAATTGGGTTTGTTTGGT 1193
Query 1194 ATCGACGTCTACAATTGTTCTCTGCGTCTCGTCACTTCATTTATGGGAACTACTCAAGTC 1253
||| ||||||||| |||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 1194 ATCAACGTCTACATTTGTTCTCTGTTTCTCATCACTTCATTTATGGGAACTTCTCAAGTC 1253
Query 1254 T 1254
|
Sbjct 1254 T 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55573667455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5