BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56200.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486062 jgi|Araly1|486062|fgenesh2_kg.5__2054__AT3G56200.1 2490 0.0
> Ahg486062 jgi|Araly1|486062|fgenesh2_kg.5__2054__AT3G56200.1
Length=1601
Score = 2490 bits (1348), Expect = 0.0
Identities = 1519/1603 (95%), Gaps = 5/1603 (0%)
Strand=Plus/Plus
Query 2 AAAAAGGAAAGCTTCTTCCCGCCGGCAAATTCTTACGTTTCTCCGGCGGTTAGAAAAATG 61
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AAAAAGAAAAGCTTCTTCCCGCCGGCAAATTCTTAAGTTTCTCCGGCGGTTAGAAAAATG 60
Query 62 ACACCACAGATCAAAACTCATCTCTTGCCGAAGCAAGAACCTTCTTCGTCTGAGAACCAT 121
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 TCACCACAGATCAAAACTCATCTCTTGCCTAAGCAAGAACCTTCGTCGTCTGAGAACCAT 120
Query 122 GGATCATCAACCTCCGGCATCGTTTTCAACGTGTCAACGAGTATAATCGGAGCCGGAATA 181
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGATCATCAACCTCCGGCATCGTTTTCAACGTGTCTACGAGTATAATCGGAGCCGGAATA 180
Query 182 ATGTCGATGCCGGCGGCGTTTAAAGTTCTTGGAATAGTTCCAGCGTTTTTGATTATCACG 241
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 181 ATGTCGATGCCGGCGGCGTTTAAGGTTCTTGGAATAGTCCCAGCGTTTTTGATTATCACG 240
Query 242 ATCATAGCTTGGCTTTCCACAATTTCCGTTGGATTTCTGATGAAATCAACTCTCGCCGGA 301
|||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||
Sbjct 241 ATCATAGCTTGGCTTTCCACCATTTCTGTTGGATTTCTAATGAAATCAACACTCGCCGGA 300
Query 302 GAATCAACTACTTACGCCGGAGTTATGAAAGAGTCGTTTGGTAAAACAGGATCCATCGCT 361
||||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||
Sbjct 301 GAATCAACTACTTACGCCGGAGTCATGAAAGAGTCGTTCGGAAAAACAGGATCCGTCGCT 360
Query 362 GTACAGATTGCTACGATGGTTGCTACTTTTGGTTGTATGATTATATTTTCGATTATTATA 421
| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 361 GCACAGATTGCTACGATGGTTGCTACTTTTGGATGTATGATTGTCTTTTCGATTATTATA 420
Query 422 GGAGATGTGCTTTCTGGTAATGAAAATGGTGG-TCCTGAACATATTGGAGTTTTGCAAGA 480
|| ||||||||||| |||||||||||||| || | || ||||| ||||||||| ||||||
Sbjct 421 GGCGATGTGCTTTCGGGTAATGAAAATGGAGGAT-CTCAACATCTTGGAGTTTCGCAAGA 479
Query 481 ATGGTTTGGTTCTTACTGGTGGAACACGAGAATCTTCGCTTTGTTATTTGTCTACGGCTT 540
||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 480 ATGGTTTGGTTCTTACTGGTGGAACACGAGAATCTTCGCTTTGTTGTTCATTTACTGCTT 539
Query 541 TGTCTTGCTTCCATTGGTCCTGCGTAGACGAGTCGAAAGACTGGCAATTAGTTCCGCTGT 600
||||||||||||||||||| || ||||||| ||||||||||||||| ||||||| || ||
Sbjct 540 TGTCTTGCTTCCATTGGTCTTGTGTAGACGTGTCGAAAGACTGGCATTTAGTTCAGCGGT 599
Query 601 ATCGTTTCTTCTTGCGGTTCTATTTGTTGTCATAAGCTCGGTGCTGGCGATTTCCGCGCT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCGTTTCTTCTTGCGGTTCTATTTGTTGTCATAAGCTCGGTGCTGGCGATTTCCGCGCT 659
Query 661 GGTGAATGGACAAACGAAGAATCCAAGACTGTTTCCGGAGTTGAGCAATGGAGGATCGTT 720
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 GGTGAATGGACAAACGAAGAATCCAAGACTGTTTCCGGAGTTAAGCAATGGAGGATCGTT 719
Query 721 CTGGCAACTCTTCACAGCTTCCCCTGTTATAGTTACAGCCTTCACGTTTCACTTCAATGT 780
||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 720 TTGGAAACTTTTCACAGCTTCCCCTGTTATAGTAACAGCCTTCACGTTTCATTTCAATGT 779
Query 781 TCATCCAATTGGATTCGAGCTCAAAGATCCATTACAAGTGATCCCAGCAACTAAGATCTC 840
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCATCCAATTGGATTTGAGCTCAAAGATCCATTACAAGTGATCCCAGCAACTAAGATCTC 839
Query 841 TGTCATCTTGTGTGCTGC-TATCTACTTCGCAACTGGACTCTTTGGTTACCTTCTCTTTG 899
|||||||||||| ||||| | | ||||| |||||||||||||| || |||||||||||||
Sbjct 840 TGTCATCTTGTGCGCTGCGT-TATACTTTGCAACTGGACTCTTCGGGTACCTTCTCTTTG 898
Query 900 GAGATGCAACTATGTCGGATATTCTAGTGAACTTTGACCAGAGCTCTGGTTCTTCCATTG 959
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAGATGCAACTATGTCAGATATTCTAGTGAACTTTGACCAGAGCTCTGGTTCTTCCATTG 958
Query 960 GTTCTCTTCTCAACGACATTGTCAGACTCAGCTACGTGCTTCACCTCATGCTGGTCTTTC 1019
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 959 GTTCTCTTCTCAACGACATTGTCAGACTCAGCTACGCGCTTCACCTCATGCTGGTCTTTC 1018
Query 1020 CTCTCCTGAACTTCTCATTGAGAGCAAATCTCGACGAACTCTTGTACCCCAAGAAGCCGT 1079
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1019 CTCTCATGAACTTCTCATTGAGAGCAAATCTCGACGAACTCTTGTTCCCCAAGAAGCCGT 1078
Query 1080 CCTTGGAAAAAGACACAAAAAGATTCATCGGACTCACTCTGGCTCTACTGATTTGCTGTT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CCTTGGAAAAAGACACAAAAAGATTCATCGGACTCACTCTGGCTCTACTGATTTGCTGTT 1138
Query 1140 TCTTGTCTGCAATCGCTGTACCAGACATTTGGTACTTCTTTCAGTTCATGGGATCAACCA 1199
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1139 TCTTGTCTGCAATCGCTGTACCAGACATTTGGTACTTCTTTCAGTTCTTGGGATCAACCA 1198
Query 1200 TCACAGTCTCCATAGCATTCATATTTCCAGCCGCCATTGTTCTAAGGAATATCCATGGTG 1259
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1199 CCACAGTCTCCATAGCATTCATATTTCCAGCCGCCATTGTTCTAAGGAATGTCCATGGTG 1258
Query 1260 TATCAACCTCAAGAGAGAAGATCGTAGCTGCAATAATGCTTGTTCTTGCTGTTGCCACTA 1319
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1259 TATCAACCTCAAGAGAGAAGATCGTAGCTGCGATAATGCTTGTACTTGCTGTTGCCACTA 1318
Query 1320 GCATTATTGCTATCTCGACAAATTTATACAGCCTCGCAGCAAACTAGTCGTTGAAAAAAG 1379
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1319 GCATTATTGCTATCTCAACAAATTTATACAGCCTCGCAGCAAACTAATGGTTGAAAAAAG 1378
Query 1380 TTTTGCAAACAGTCCCTTCCATGATCACTTCAAAGAAATCTGTAAAATTATTAGCTTGCC 1439
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1379 TTTTGCAAACAGTCCCCTCCATGATCACTTCAAACAAATCTGTAAAATTATTAGCTTTCC 1438
Query 1440 GTAGCATTCATATTTATATCTTTGTGAAATAGGTTTGTCAGAAAATGCAATGTAATAGCT 1499
|||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||
Sbjct 1439 GTAGCATTCATATTTATATCTTTGTGAAATAGGTGTGTCACAAATTGCAATGTAATAGCT 1498
Query 1500 ATACAAAGTGCAATTTTTGTTGCTGCTTGAAACAGAGAAAG-AGGAAATGAACAACTCTT 1558
||| |||||||| ||||||||| ||||||||||||| || | |||||||||||||||
Sbjct 1499 ATAGGGAGTGCAATATTTGTTGCTACTTGAAACAGAGAGAGCAAAAAATGAACAACTCTT 1558
Query 1559 CAAAACTTGTATTCTTTAAATTACTTTTTGTAGACCATTATTT 1601
||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 1559 CAAAACTAGTATTCTTTCAATCACTTTTTGTAGACCATTATTT 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5