BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56210.5
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324140 jgi|Araly1|324140|fgenesh1_pm.C_scaffold_5001684 898 0.0
Ahg488857 jgi|Araly1|488857|fgenesh2_kg.6__1991__AT5G19630.1 178 1e-43
> Ahg324140 jgi|Araly1|324140|fgenesh1_pm.C_scaffold_5001684
Length=588
Score = 898 bits (486), Expect = 0.0
Identities = 557/590 (94%), Gaps = 10/590 (2%)
Strand=Plus/Plus
Query 166 ATGCGGATTCTTACTGCTCGCATAGCTAACCATTTTTGCAGGGCACGAAACGCG-A--AT 222
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 ATGCGGATTCTTGCTGCTCGCATAGCTAACCATTTTTGCAGGGCACGAAACGCGTATCAG 60
Query 223 CCTCGATCTCGAAATTTCTCCTCGTCGAACAAGAAAGATGACCTTACATTGGAGGAAGAA 282
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCGATCTCGAAATTTCTCCTCGTTGAACAAGAAAGATGACCTTACATTGGAGGAAGAA 120
Query 283 GCTGAGAGGAAAATAGGTTGGTGTCTCAAAATTTTCTTTGCGGGCACAGCAACGTATATT 342
||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 121 GCTGAGAGGAAAATAGGCTGGTGTCTCAAAATTTTCTTTGCTGGCACTGCAACGTATATC 180
Query 343 GGATACCAGTTTTTCCCTTACTTAGGTGATAACTTAATTCATCAATCAATATCGCTTTTA 402
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGATACCAGTTTTTCCCTTACTTAGGTGATAACTTGATTCATCAATCAATATCGCTTTTA 240
Query 403 CATGTGAAGGATCCTTTGTTTAAGAGAATGGGAGCTTCTCGGCTTTCCCGTTTCGCTATT 462
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 CATGTCAAGGATCCTTTGTTTAAGAGAATGGGAGCTTCTAGGCTTTCCCGTTTCGCTATT 300
Query 463 GATGATGAAAGGAGGATGAAGGTTGTAGAGATGGGTGGGGCTCAAGAGCTACTACATATG 522
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct 301 GATGATGAAAGGAGGATGAAGGTTGTGGAGATGGGTGGGGCTCAAGAGCTTCTACTTATG 360
Query 523 TTGGGAAGTGCTAAAGATGACAAGACAAGGAAAGAAGCCCTAAAGGCTCTTGCTGCTCTC 582
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 361 CTGGGAAGTGCTAAAGATGACAAGACAAGGAAAGAAGCTCTAAAGGCTATTGCTGCTCTC 420
Query 583 TCTAAATCAGTTGC-AGG-T---GAAGCTGCTAAATTCCTAGGCTCTAATGGAGCACTCT 637
|||||||||| || || | |||||||| || |||||||||||||||||||||||||
Sbjct 421 TCTAAATCAG--GCCAGTCTTATGAAGCTGCCAACTTCCTAGGCTCTAATGGAGCACTCT 478
Query 638 CTATCGTCAAATCGACTCCAAATTCCTTGGAAGATTCAGACATTTCAACATACAAGTCAA 697
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 479 CTATCGTCAAATCGACTCCAGATTCCTTGGAAGATACAGACATTTCAACATACAAGTCAA 538
Query 698 ACATACTCGAGAAGCTAGTTGAGAAAAACCTCGCTGTCTCTTCCAACTGA 747
|||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 539 ACATACTCGAGAAGCTAGATGAGAAAAACCTCGCCGTCTCTTCCAACTGA 588
> Ahg488857 jgi|Araly1|488857|fgenesh2_kg.6__1991__AT5G19630.1
Length=747
Score = 178 bits (96), Expect = 1e-43
Identities = 124/137 (91%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 1117 AAGAGGTGTCAGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAACGA 1176
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 250 AAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAAGGA 309
Query 1177 TGTGG-CGCTGTTTTTCGGTGGATTGGTTAGAATGTTG-ATGCTCATAGGATCCTGCTTG 1234
||| | |||||||| ||||||| || || ||||||||| | ||||||||||||||||| |
Sbjct 310 TGTCGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTGGA-GCTCATAGGATCCTGCTCG 368
Query 1235 TGGGTTCGTCTGCTGGT 1251
||||||| |||||||||
Sbjct 369 TGGGTTCTTCTGCTGGT 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60563489550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5