BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56220.1 Length=723 Score E Sequences producing significant alignments: (Bits) Value Ahg486063 jgi|Araly1|486063|fgenesh2_kg.5__2055__AT3G56220.1 804 0.0 > Ahg486063 jgi|Araly1|486063|fgenesh2_kg.5__2055__AT3G56220.1 Length=657 Score = 804 bits (435), Expect = 0.0 Identities = 481/503 (96%), Gaps = 4/503 (1%) Strand=Plus/Plus Query 1 AGAAGAAGCTAAAACATATAAGAATGGTTTCGAGAGAACACAAGAGAGGTTCCTCTCTGC 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 AGAAGAAGCTAAAACATATAAGAATGGTTTCGAGGGAACACAAGAGAGGTTCCTCTCTGC 60 Query 61 GTGAGAAGTTTCATTTGCTTCGTTCAATCACTGATTCTCATGCTGAGAGCGAAACATCTA 120 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 61 GTGAGAAGTTTCATTTGCTTCGTTCAATCACTAATTCTCATGCTGAGAGCGAAACATCTG 120 Query 121 TCATAGTGGATGCATCAAAATATATCAAAAAGCTTAAGCAGAAGGTAGAAAAAATCAACA 180 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 121 TCATAATGGATGCATCAAAATATATCAAAAAGCTTAAGCAGAAAGTAGAAAAAATCAACA 180 Query 181 ATGCGACCACGTCTGAGCAATCTTTCCGTGAATCTTCCGATCCAAATCCTATGGTTACAG 240 ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 181 ATGAGACCACGTCTGAGCAATCTTTCCGCGAATCTTCCGATCCAAATCCTATGGTTACAG 240 Query 241 TGGAAACCCTAGAGAAGGGGTTCATGATAAAGGTAATGTCAAG-GAAGAATGAGGCAGGC 299 |||||||||||||||||||||||||| |||| ||||||||| | |||||||||||||||| Sbjct 241 TGGAAACCCTAGAGAAGGGGTTCATGGTAAAAGTAATGTCA-GTGAAGAATGAGGCAGGC 299 Query 300 ATGTTGGTTTGTGTTCTTGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGG 359 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 300 ATGTTGGTTTGTGTTCTCGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGG 359 Query 360 GTTTCATGTACTGACACATTTAGCTTGCATGCCATTGGTTCATCAAATAATGATGATGGA 419 ||||||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||| Sbjct 360 GTTTCATGTACAGACACATTTAGCTTACATGCCATCGGTTCATCAAATAATAATGATGGA 419 Query 420 GAC-TGCATAGATGCTGAAGCAGTGAAACAGGCAGTGGCAGAAGCAATAAGGACCTGGAG 478 ||| | ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 420 GACAT-CATGGATGCTGAAGCAGTGAAACAGGCAGTGACAGAAGCAATCAGGACCTGGAG 478 Query 479 TGATAGCCATGCATGATTCAAAA 501 ||||||||||||||||| ||||| Sbjct 479 TGATAGCCATGCATGATCCAAAA 501 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26609796066 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5