BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G56220.1

Length=723
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486063 jgi|Araly1|486063|fgenesh2_kg.5__2055__AT3G56220.1         804    0.0  


> Ahg486063 jgi|Araly1|486063|fgenesh2_kg.5__2055__AT3G56220.1
Length=657

 Score =  804 bits (435),  Expect = 0.0
 Identities = 481/503 (96%), Gaps = 4/503 (1%)
 Strand=Plus/Plus

Query  1    AGAAGAAGCTAAAACATATAAGAATGGTTTCGAGAGAACACAAGAGAGGTTCCTCTCTGC  60
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  1    AGAAGAAGCTAAAACATATAAGAATGGTTTCGAGGGAACACAAGAGAGGTTCCTCTCTGC  60

Query  61   GTGAGAAGTTTCATTTGCTTCGTTCAATCACTGATTCTCATGCTGAGAGCGAAACATCTA  120
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  61   GTGAGAAGTTTCATTTGCTTCGTTCAATCACTAATTCTCATGCTGAGAGCGAAACATCTG  120

Query  121  TCATAGTGGATGCATCAAAATATATCAAAAAGCTTAAGCAGAAGGTAGAAAAAATCAACA  180
            ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  121  TCATAATGGATGCATCAAAATATATCAAAAAGCTTAAGCAGAAAGTAGAAAAAATCAACA  180

Query  181  ATGCGACCACGTCTGAGCAATCTTTCCGTGAATCTTCCGATCCAAATCCTATGGTTACAG  240
            ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  181  ATGAGACCACGTCTGAGCAATCTTTCCGCGAATCTTCCGATCCAAATCCTATGGTTACAG  240

Query  241  TGGAAACCCTAGAGAAGGGGTTCATGATAAAGGTAATGTCAAG-GAAGAATGAGGCAGGC  299
            |||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||
Sbjct  241  TGGAAACCCTAGAGAAGGGGTTCATGGTAAAAGTAATGTCA-GTGAAGAATGAGGCAGGC  299

Query  300  ATGTTGGTTTGTGTTCTTGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGG  359
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  ATGTTGGTTTGTGTTCTCGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGG  359

Query  360  GTTTCATGTACTGACACATTTAGCTTGCATGCCATTGGTTCATCAAATAATGATGATGGA  419
            ||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct  360  GTTTCATGTACAGACACATTTAGCTTACATGCCATCGGTTCATCAAATAATAATGATGGA  419

Query  420  GAC-TGCATAGATGCTGAAGCAGTGAAACAGGCAGTGGCAGAAGCAATAAGGACCTGGAG  478
            ||| | ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct  420  GACAT-CATGGATGCTGAAGCAGTGAAACAGGCAGTGACAGAAGCAATCAGGACCTGGAG  478

Query  479  TGATAGCCATGCATGATTCAAAA  501
            ||||||||||||||||| |||||
Sbjct  479  TGATAGCCATGCATGATCCAAAA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26609796066


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5