BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56230.1
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348708 jgi|Araly1|348708|fgenesh1_pg.C_scaffold_5002100 1249 0.0
> Ahg348708 jgi|Araly1|348708|fgenesh1_pg.C_scaffold_5002100
Length=831
Score = 1249 bits (676), Expect = 0.0
Identities = 783/835 (94%), Gaps = 5/835 (1%)
Strand=Plus/Plus
Query 155 ATGCCATCTATATTAAGACCACCAAGAAACACAATATGTGGATCATGCTACGAAGGGGCT 214
||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 1 ATGCCATCTATTTTAAGACCACCTAGGAACACAATATGTGGATCGTGCTACGAAGGGGCT 60
Query 215 AGAACAACAATTGCGCTGCTCAAGAAACTTGAGGGCTCGAAAGAAGATCGTCATGACAAA 274
||||| || || || |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 61 AGAACCACTATCGCCCTGCTCAAGAAACTTGAGGGCTCGAAAGAAGA---TCATGAAAAA 117
Query 275 TCGAACCATAATTCCACCATCAATAATGGCTCCTCTATTTCTTCGTCTCCTTTGTTTTCT 334
||||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 118 TCGAACCATAAATCCACCGTCAATAATGGCTCCTCTCTTTCTTCTTCTCCTTTGTTTTCT 177
Query 335 TGTGAGCCGCAACCATTAGAGAAGGTGATCAAATGGATgaaaaacatgaaagaaaccgaa 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGTGAGCCGCAACCATTAGAGAAGGTGATCAAATGGATGAAAAACATGAAAGAAACCGAA 237
Query 395 gaagaacagaagaaaagaaTAGTCTTCTTAAGCAGCTTTGTGTCGGGTTTCAAAGAACAG 454
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 238 GAAGAACAGAAGAAAAGGATAGTCTTCTTGAGCAGCTTTGTTTCGGGTTTCAAAGAACAG 297
Query 455 CTTCATGCTGATATTCTTCTAAAACCGGGCGATGATGGCCCTCCAATTCCTGCACATAGA 514
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 298 CTTCATGCTGATATTCTTCTAAAACCTGGCGACGATGGCCCTCCAATTCCTGCACATAGA 357
Query 515 GCTTTGCTGGCTTCAAAATCTGAGATCTTTAAGAACATTCTAGACTCAGATGGATGCAAA 574
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 358 GCTTTGCTGGCTTCAAAATCTGAGATCTTCAAGAACATTCTAGACTCCGACGGATGCAAA 417
Query 575 ACCGCTCCAGAATACGCCATAACGCTCCAAGAACTAAATTCCGAGCAACTTCAAGCTCTC 634
||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||
Sbjct 418 ACCGCTCCAGAATACGCGATAACGCTCCAAGAGCTGAATTCTGAGCAACTTCAAGCTCTC 477
Query 635 TTGGAGTTTCTATACACCGGTACATTGGCTTCAGATAAGTTGGAGAAAAATGTCTACGCG 694
|||||||||||||||||||| |||||||||||||| |||||||||||| || | || ||
Sbjct 478 TTGGAGTTTCTATACACCGGCACATTGGCTTCAGACAAGTTGGAGAAACATATTTATGCA 537
Query 695 TTGTTTATTGCAGCAGATAAGTACATGATTCATTACTTGCAAGAGTTGTGCGAGCAATAT 754
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTGTTTCTTGCAGCAGATAAGTACATGATTCATTACTTGCAAGAGTTGTGCGAGCAATAT 597
Query 755 ATGTTAAGTTCCTTGGACATCTCTAGTGTTCTTAACGTTCTTGATGTCTCGGATCTTGGT 814
||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 598 ATGTTGAGTTCCTTAGACATTTCTAGTGTTCTTGACGTTCTTGATGTCTCGGATCTTGGT 657
Query 815 TCGAGCAAGACGCTGAAGGAGGCTTGTGTAGGGTTCGTGGTGCGGAACATGGACGACGTC 874
|| |||| ||||||||||||||||||| || | |||||| ||||||||||||||||||||
Sbjct 658 TCAAGCACGACGCTGAAGGAGGCTTGTCTAAGATTCGTGATGCGGAACATGGACGACGTC 717
Query 875 GTTTTCTCGGATAAGTACGAACCT-TTCTCTCAGAAAAACCAACATCTATGTGTGGAGAT 933
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 718 GTTTTCTCGGATAAGTACGAAG-TGTTCTCTCAGAAAAACCAACATCTATGTGTGGAGAT 776
Query 934 CACAAGGGCGTTCTTGATGGAAACGAGAAGCAAGAGACGTGACTAATTAAATTAG 988
|||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 777 CACAAGGGCGTTCTTGATGGAAACGAGAAGCAAGAGACGTGATTTATCAAATTAG 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5