BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56240.1
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486064 jgi|Araly1|486064|fgenesh2_kg.5__2056__AT3G56240.1 987 0.0
> Ahg486064 jgi|Araly1|486064|fgenesh2_kg.5__2056__AT3G56240.1
Length=687
Score = 987 bits (534), Expect = 0.0
Identities = 651/703 (93%), Gaps = 25/703 (4%)
Strand=Plus/Plus
Query 1 CGAATCTTTGCTTTTGCGTTACTATAAATA-TTCAGAAGACACCATTTCTTCTCATTCAA 59
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1 CGAATCTTTGCTTTTCCGTTACTATAAATACTTAAGAAGACACCATTTCTTCTCATTCAA 60
Query 60 CAAACAAG-CATCTCATTCTCTGATTCGGTCCATCGATCTCAAAGG-CTCAAAGCTTAAT 117
||||| || |||||||||| || |||| | ||| | || || ||||||||||| |
Sbjct 61 CAAAC-AGACATCTCATTCCCTTATTCAG---ATC-A--TC---GGTCTCAAAGCTTAGT 110
Query 118 CGTTTCCTTTCTTC---T-TATTCTAGCCATGGCTCAGACCGTTGTCCTCAAAGTTGGTA 173
|||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 111 CGTTTCCTTTCTTCTTATATATTATAGCCATGGCTCAGACCGTTGTCCTCAAAGTTGGTA 170
Query 174 TGTCATGCCAAGGCTGCGTTGGTGCCGTCAATAGAGTTTTAGGCAAAATGGAAGGGGTTG 233
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 171 TGTCATGCCAAGGCTGCGTTGGTGCCGTCAATAGAGTCCTAGGCAAAATGGAAGGGGTTG 230
Query 234 AGTCATTTGACATTGATATCAAGGAGCAAAAGGTGACAGTGAAAGGTAATGTTGAGCCTG 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 AGTCATTTGACATTGATATCAAGGAGCAAAAGGTGACAGTGAAAGGTAATGTTGAGCCTG 290
Query 294 AAGCAGTTTTCCAAACAGTTTCAAAGACCGGAAAGAAGACTTCTTACTGGCCAGTGGAGG 353
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 291 AAGCAGTTTTCCAAACAGTTTCAAAGACTGGAAAGAAGACTTCTTACTGGCCAGTGGATG 350
Query 354 CTGA-AGCTGAGCCAAAAGCCGAGGCTGATCCTAAGGTCGAAACCGTGACTGAGACTAAA 412
|||| | |||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 351 CTGAGA-CTGAGCCAAAAGCCGAGGCTGAGCCTAAGGCCGAGGCCGTGACTGAGACTAAA 409
Query 413 ACCGAGGCTGAGACTAAGACTGAGGCTAAGGTTGATGCAAAAGCTGATGTTGAACCAAAA 472
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 410 ACCGAGGCTGAGACTAAGACTGAGGCTAAGGTTGATGCAAAAGCGGATGTTGAACCAAAA 469
Query 473 GCCGCAGAAGCCGAGACTAAGCCATCACAAGTTTAAGTATACTAACGATGAAAAGGAAGG 532
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 470 GCCGCAGAAGCCGAGACTAAGCCATCACAAGTTTAAGTATACTAAAGATGAGAAGGAAGG 529
Query 533 CTAATCTACCTTTACAATGCTTCTTTATCTTTTGCTTTTGTGTGTTGTTGTAAGAAATGC 592
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 530 CTAATCTACCTTTACAATGCTTCTTTATCTTTTGCTTGTGTGTGTTGTTGTAAGCAATGC 589
Query 593 TTCCTCTAAATACCTAATATCTTTATGTATGTATACCTTTTTCAAC-TATTGATAACAAG 651
|| ||||||| | ||||||| ||| |||||||||||||||||| | ||||||| |||
Sbjct 590 TTTCTCTAAACATCTAATAT-TTTC---ATGTATACCTTTTTCAACCT-TTGATAAGAAG 644
Query 652 ATGTTGGACCCATGTTGGTCCGACTTTCTTTTATAAGAAGTTT 694
|||||||||||||||||||||||||||||||||||| || |||
Sbjct 645 ATGTTGGACCCATGTTGGTCCGACTTTCTTTTATAATAAATTT 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26152321062
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5