BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56250.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898568 jgi|Araly1|898568|Al_scaffold_0005_2534 998 0.0
> Ahg898568 jgi|Araly1|898568|Al_scaffold_0005_2534
Length=675
Score = 998 bits (540), Expect = 0.0
Identities = 633/677 (94%), Gaps = 10/677 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCTCCTCGCTCCGTCGGAGGAAGAATACAGAGGAAACCGCTCGCGGATTGTACT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGCTCCTCGCTCCGTCGGAGGAAGAATACAGAGGAAACCGCTCGCGGATTGTACC 60
Query 61 AACACCGTCTCCAGATCTTCTCAACAGTCATCTTCTTCTGTAAAATTCGCGAATCCGAGT 120
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 61 AACACCGTCTCCAGATCTTCTCAACAGTCATCTTCTTCAGTCAAATTCGCGAATCCGAGT 120
Query 121 CTCACTTCTTCACTAAAGAG-ATTAGTAGAACAAACTACGCTCAAGGAGAAACCCAAAGA 179
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCACTTCTTCACTTAAGAGGAT-AGTAGAACAAACTACGCTCAAGGAGAAACCCAAAGA 179
Query 180 TGTTAATACTTCGGCGACTGCTCCCGAAATCGCTTCTCGGCCTATTACCACGGACGTTAG 239
||||| |||||| | |||| || | || | |||||||||| || || ||||| |||||||
Sbjct 180 TGTTATTACTTCAGAGACTACTTCTGAGAGCGCTTCTCGGTCTCTTGCCACGAACGTTAG 239
Query 240 ACCCGTAACTCGCCGTATGTCTGCTGATCTGGCTTCTCCGGCCTCAGCTCCTTCTCGTCC 299
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||
Sbjct 240 ACCCGTAACTCGCCGTATGTCTGCCGATCTGGGTTCTCCGGCCTCTGCTCCTTCTCGTCC 299
Query 300 CCAAACATCGCGATCTGATATGGGTGTTAGTGACAAGGAT--TTTA-CTGAGCCTTGGTC 356
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||
Sbjct 300 CCAAACATCGCGATCTGATATGGGCGTTAGTGACAAGGATGATTTTGCTGAGCCTTGGTC 359
Query 357 TGTTTACACGGTAAGAAGGAAGGCCTCTGGACAAAAAAGAAGTAAAGACGCATCTTCCTC 416
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 360 TGTTTACACGGTAAGAAGGAAGGCCTCTGGACAAAAAAGGAGTAAAGACGCTTCTTCCTC 419
Query 417 TACTAGTGCAGCAGCTCGCATTCGTCTCGACTTGTCATCAAGCTCTGGGAAGAAAACACG 476
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 420 TACTAGTGCAGCAGCTCGCCTTCGTCTCGACTTGACATCAAGCTCTCGGAAGAAAACACA 479
Query 477 TCAAGCTAGTGAAAACAAAAAGAAGAC--C-TTGAAAGTGGCTCCAAAAAAGAGACAGCG 533
|||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 480 TCAAGCAAGTGAAAACAAAAAGAAGACGACCTTGAAAGTGGCTCCAAAAAAGAGACAGCG 539
Query 534 GACGGTAAAGCAAGAGAAAGAGGATCCGGTTAGTGCAGCTTGTCAGGATTATATCGAGAA 593
|||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 540 GACGTTAAAGCCAGAGAAAAAGGATCCGGTTAATGCAGCTTGTCAGGATTATATCGAGAA 599
Query 594 GCAGAAAGCTTACTTTGCAGAGATTGATGCATTTGAGCTGCC-AGTAGAAGAGGTATCTA 652
|||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 600 GCAGAAAGCTTATTTTGCAGAGATCGATGCATTTGAGCTGCCCA-TAGAAGAGGTATCTA 658
Query 653 ATAGCGACTCAGACTAA 669
|||||||||||||||||
Sbjct 659 ATAGCGACTCAGACTAA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5