BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56260.2
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486066 jgi|Araly1|486066|fgenesh2_kg.5__2058__AT3G56260.1 726 0.0
> Ahg486066 jgi|Araly1|486066|fgenesh2_kg.5__2058__AT3G56260.1
Length=990
Score = 726 bits (393), Expect = 0.0
Identities = 526/587 (90%), Gaps = 21/587 (4%)
Strand=Plus/Plus
Query 485 GATCTCAGGAGGAGCAATCACGGTAGCAAGAAGACGGCAAGCTCATCGTTTTCTTGGTCT 544
|||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 408 GATCTCAGGAGGAGCAGTCACGGTAGCAAGAAGACGACCAGCTCATCGTTTTCTTGGTCT 467
Query 545 TCTACGTCATCTTCATCTTCCTTTTCCTCCTCGCCACCACATTCTTTGAAAAAACGTAT- 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 468 TCTACGTCATCTTCATCTTCCTTTTCCTCCTCGCCACCACATTCTTTGAAAAAACG-AGC 526
Query 604 GAGTCACGACAAAAAATCGCCACTTCTGTACGCTAACTACGAAGAGGATGAGCTTAGGTC 663
|||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct 527 GAGTCATGACAAAAAATCACCACTTCTGTACGCGAACTACGGAGAGGATGAGCTTAGGTC 586
Query 664 TTCACCAACCTCGACTCTGTGTTGCTCCAACGGGGGAAGACTTGGCTGTAGTTCTTCAAT 723
|||||||||||||||||| ||| |||||| ||||| || |||| ||||||||||||||
Sbjct 587 GTCACCAACCTCGACTCTGCGTTACTCCAAGGGGGGGCGAATTGGGTGTAGTTCTTCAAT 646
Query 724 GGGGAGTGTGACAAGAGCTCTGTTCTCTGGGTCAATGGAGGGTATGAAGAGACATGAGAC 783
||||||| |||||||| |||||||| |||| |||||||| |||||||||| | | |||
Sbjct 647 GGGGAGTCTGACAAGATCTCTGTTCCCTGGATCAATGGAAAATATGAAGAGAAACGGGAC 706
Query 784 CACAGGTAAAGCTCTAATCATCAGCGACATGAATAAAGCTTGATTATGTGAATA-A---A 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 707 CACTGGTAAAGCTCTAATCATCAGCGACATGAATAAAGCTTGATTATGTGAATCTATTGA 766
Query 840 G--CTTGGTTTTTTCTATGAGCTGCTTCGCCTCATTGAACAGAGAGTGTTATAGTTATTG 897
| |||| || ||||||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 767 GTGCTTGATTCTTTCTATGAGCTGCTTCACCTCATTGAACAGAG--TGTTATAGTGCTTG 824
Query 898 GTGTGTGAATGTAAGTATATAGTTTGTCTCTC--AGTCGTGGCCTTA-CC-TGTGTAT-T 952
||||||||||||| ||||||||||||||||| ||||||||||||| || ||||| | |
Sbjct 825 ATGTGTGAATGTAACTATATAGTTTGTCTCTCTCAGTCGTGGCCTTAACCGTGTGT-TGT 883
Query 953 G-----TGGACAGGCTTTTTCGTCAATTCATGTCTAAGTAGAACCAAGAACGTTCTCCCA 1007
| |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct 884 GGACACTGGACAGGCTTTCTCGTCAACTCATGTCTATCTAGAACCAAGAACGTTCTCCCA 943
Query 1008 CTGAAACGATGTTAAATATTATAAACCGATAGATATTTTGTATACAC 1054
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 944 CTGAAACGATGTTAAATATTATAAACCGATAGATCTTTTGTATACAC 990
Score = 514 bits (278), Expect = 5e-145
Identities = 365/405 (90%), Gaps = 14/405 (3%)
Strand=Plus/Plus
Query 32 CAGAATAAATATCCACGAT--TATATACAACCGTGCAAAGAAGATTCTTTTGTTTCATCG 89
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 CAGAATAAATATCCACGATCATATATACAACCGTGCAAAGAAGATTCTTTTGTTTCAT-- 58
Query 90 GCAAACTTGTTTTACTCGCAATACATATTACTCTTTGTCACCTCTAAAGAAGCTTCGAAA 149
| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 59 ---AGCTTGTTTTACTCACAAAACATATTACTCTTTCTCACCTCTAAAGAAGCTTCGAAA 115
Query 150 CTAGCACTTGTTGTTT-CAATTTTCGTACATCAATTCTCATCAAAAGCCGACTCAAACAT 208
||||||||| ||||| || ||||||||| |||||||| || |||||| |||||||||||
Sbjct 116 CTAGCACTTCCTGTTTCCATTTTTCGTACTTCAATTCTGATAAAAAGCTGACTCAAACAT 175
Query 209 AAAC-CGAGAGTTTATAAAA-AACAGATGTCAGAAAGACTAGAAGATGACTTTGCAATCG 266
| || || |||||| |||| || | |||||||||||| |||||||||||||||||||||
Sbjct 176 AGACACG-GAGTTT-GAAAATAATAAATGTCAGAAAGAATAGAAGATGACTTTGCAATCG 233
Query 267 ATGAAGAGAGATCCTCCTACTATGGCGGAGCCTCCATACCATTCATATGGGAGTCAAGGC 326
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ATGAAGAGATATCCTCCTACTATGGCGGAGCCTCCATACCATTCATATGGGAGTCAAGGC 293
Query 327 CAGGAACACCCAAAAACCACCTCTGCTCCGATTCCTCTCTTCCTCTGCCTCTCACACCGC 386
| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||
Sbjct 294 CTGGAACACCCAAAAACCACCTCTGCTCCGATTCCTCTCTTCCTCCGCCGCTCACCCCGC 353
Query 387 CGCCCTCATACTACTCCTCCGGGATTTTGTCGACACC-AAG-GAC 429
| || || |||||||| |||| ||||||||||||||| ||| |||
Sbjct 354 CTCCGTCGTACTACTCTTCCGAGATTTTGTCGACACCGAAGAGAC 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39266604510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5