BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56270.1 Length=1756 Score E Sequences producing significant alignments: (Bits) Value Ahg486067 jgi|Araly1|486067|fgenesh2_kg.5__2059__AT3G56270.1 2045 0.0 Ahg483106 jgi|Araly1|483106|fgenesh2_kg.4__2166__AT2G40480.1 436 2e-121 > Ahg486067 jgi|Araly1|486067|fgenesh2_kg.5__2059__AT3G56270.1 Length=1668 Score = 2045 bits (1107), Expect = 0.0 Identities = 1521/1711 (89%), Gaps = 67/1711 (4%) Strand=Plus/Plus Query 70 GTGACTTTCATTACCGAGAAAAACACAATCATAGAGAAGCTCTCAATCTTGTTTGCTTCT 129 |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| Sbjct 1 GTGACTTTCATTACCGAG-AAAACATAATTATAGAGAAGCTCTCAATCTTGTTTGCTTCT 59 Query 130 GATCAGTAACTATGATTACTGTAAATAGATCACTCTTTCATTATCTTTCCCTTTCACTTG 189 | ||||| ||||||||||||| ||| |||| |||||| ||||||||||||||||| || Sbjct 60 GGGCAGTATCTATGATTACTGT-AATGGATCCCTCTTTAATTATCTTTCCCTTTCAAGTG 118 Query 190 TACAAACCAATTCGTTCT-C-GAGCTAACGGAAATGGCGGAGAGGCAAC-AGAGCCCTGC 246 |||| |||| || ||||| | |||| | || |||||||| | ||| | | | |||||| Sbjct 119 TACACACCAGTTGGTTCTCCAGAGC--GCAGAGATGGCGGAAATGCATCTA-AACCCTGC 175 Query 247 GGCGGAGACGATTCCCGGTACACCCGTAATCCGGGAAGTGAGAACCGGAACCGGGTCCGA 306 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | Sbjct 176 GGCGGAGACGATTCCCGGTACACCCGTAATCCGGGAGGTGAGAACCGGATCCGGGTCCCA 235 Query 307 GAATTTCAACCCGGAGAATACAAGGAGAGGATG-CTTGAGAGCTGAAATCGACATTTCTC 365 ||||||||||||||||| ||||||||||||| | | ||||||||||||| ||||||||| Sbjct 236 GAATTTCAACCCGGAGAGTACAAGGAGAGGAGGAC-TGAGAGCTGAAATGGACATTTCTT 294 Query 366 CACAGTTATATGGTGGTCGTGGGTTCT-GGGTTCCCTTCAATCTT-GAAGACAATTACGA 423 ||| ||||| ||||||||||||| ||| ||||||| ||| ||||| ||| |||| ||||| Sbjct 295 CACCGTTATTTGGTGGTCGTGGG-TCTCGGGTTCCGTTCGATCTTGGAA-ACAACTACGA 352 Query 424 CTGTGTGGGAGAATTTGACATAAAGAGAATGGAAGAACAGACAGTGGAGCTTGAGAAGGA 483 | |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 353 CGGTGTGGGAGATTTTGACATAAAGAGGATGAAAGAACAGACAGTGGAGCTTGAGAAGGA 412 Query 484 TCTGATTATGAAAGAGTTAGAGACTCTGGATCTTCTTGAAGCTCTTGGATCAACCAAAAG 543 ||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 413 TCTGATTATGAAAGAGTTAGAAACACTAGATCTTCTTGAAGCTCTTGGATCAACCAAAAG 472 Query 544 GATTTTTGAAGATTTGAAGTGGCAGCTTCAGCAGCAAGCACTGAGATGCAAGGAGACCCC 603 ||| |||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||| Sbjct 473 CATTGTTGAAGATTTGAAGTGGCAGCTCCAGCAACAAGCACTTAGATGCATGGAGACCCC 532 Query 604 TCAACATTTGCGTTCACAC-TCCAAAGAGATGGTCGATGAGCACTGCCATCGTAATCCCC 662 ||||||||||||||||||| | |||||||||| ||||||| || | | ||| || Sbjct 533 TCAACATTTGCGTTCACACAT-CAAAGAGATGATCGATGA--AC-G-C-TCG------CC 580 Query 663 TGAAGTCTCCGGATCTGATGACCATGGAAATGAAGCAAGCTGGTATGAATCTTTGTAAAA 722 | | ||| || | | | ||||| |||||||||| |||||||| || |||||| Sbjct 581 AG-A-TCT---GA-C-CCT---CTTGGAATTGAAGCAAGCAAGTATGAATATTGGTAAAA 630 Query 723 CCATGGATGATCTTGCGTTGATCCACTCTTATGCTGAATCTCTGAATATGAAAACGAAGG 782 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 631 CCATGGATGATCTTGCGTTGATCCACTCTTATGCTGAATCTCTGAATATAAAAACGAAGG 690 Query 783 AAGAGAAAGATGTCCTTGGAGTAGCGTCTCTAGCGGAGGAACTTAACAGTTTGAAGTTTA 842 |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct 691 AAGAGAAAGATGTCTTTGGAGTAGCGTCTCTAGCTGAGGAGCTTAACAGTTTGAGGTTTA 750 Query 843 AACCAGCAGGTCCTGATCAAGTAGAGAGATTCAATACCGAGAATTTAC-CAGTGAATCCA 901 | ||||||||||||||| ||| |||||| |||||||||||| |||||| | ||||| ||| Sbjct 751 ACCCAGCAGGTCCTGATGAAGGAGAGAGGTTCAATACCGAGGATTTACTC-GTGAACCCA 809 Query 902 CAATGTGAACAGATTAAGATGGTAGTTGAAACCTATGATACAGCTTTCCATAAACAGAGC 961 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 810 CAATGTGAACAGATTAAGATGGTAGTTGAAACCAATGATACAGCTTTTCATAAACAGAGC 869 Query 962 AAAACCTGCCCGAGAACTGCAGATATGAGATTGGTTGCTGCAAGAAAAATGGAAGAGGCA 1021 || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 870 AAGACCTGCCTGAGAACTGCAGAAATGAGATTGGTTGCTGCAAGAAAAATGGAAGAGGCT 929 Query 1022 GCAAGAGCAGCGGAAGCACTTGCGCTTGCTGAAATGACCATATTATCCAGCAG-AAGAAA 1080 ||| ||||||||||||||||||||||| ||||||||||||||||||||||| | || ||| Sbjct 930 GCACGAGCAGCGGAAGCACTTGCGCTTTCTGAAATGACCATATTATCCAGC-GTAAAAAA 988 Query 1081 CCAAGACGC-TCTCTGCTTCCCTAAGACACCATGTTTTCCATTAACACTTAAAGCACAGA 1139 | ||||| | | |||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 989 CGAAGACACAT-TCTGCTTCCCGGAGCCACCATGTTTTCCATTAACACTTAAAGCACAGA 1047 Query 1140 TGAACAAAGAATTATCCACCAATGTCTCAAGAATAGAGATCTTGAGGAAGCTGGAGGAAG 1199 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1048 TGAACAAAGAATTATCCGCCAATGTCTCAAGAATAGAGATCTTGAGGAAGCTGGAGGAAG 1107 Query 1200 CTAACGAAGAAGTTAAACAAAGT-AAACAAGCCTTGGAAG-TTGCGTTAAACCGGGTAGA 1257 |||| |||||||||||||||||| ||| |||| |||| || ||||||||||||||||| Sbjct 1108 CTAATGAAGAAGTTAAACAAAGTCAAA-AAGCTTTGG-AGACGGCGTTAAACCGGGTAGA 1165 Query 1258 AATCGCTAGTGTGAAGCAACTTGAAGCAGAAGAGGCATTTCGGCAGTGGAACATAGAGTC 1317 | |||| | | |||||||||||||||| |||| || ||||||||||||||||||||||| Sbjct 1166 AGTCGCCAATACGAAGCAACTTGAAGCACAAGATGCGTTTCGGCAGTGGAACATAGAGTC 1225 Query 1318 ATGGAAAGACCAGAAAGCTGTTGGAGCAAAACGCTCGATGAAAAGAGAAAGCTTTCCTCA 1377 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1226 ATGGAAAGACCAGAAAGCTGTTGGAGCAAAACGCTCAATGAAAAGAGACAGCTTTCCTCA 1285 Query 1378 GCGCTCTTTCTTGAGCCATATCAATCAGCACGAGCCACTGATCGATCTCCCTGAGCCAAT 1437 ||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||| Sbjct 1286 ACGCTCCTTCTTGAGCCATGTGAAGCAGCACGAGCCACTGATCGATCTCCCTGAGCCAAT 1345 Query 1438 GCTGAAACGTAACGTCTCAATGGGTAAT---GCTCTTAACCGAAAAGATGAGAAACAGTT 1494 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 1346 GCTGAAACGTAACGTCTCAATGGGTAATAATGTTCTTAACCGAAAAGATGAGAAACAGTT 1405 Query 1495 GGTCACGCCGAGGAGAAAGTTTAGGTTCATACAAACACATCAAGCTTCCATTAGAAAAAC 1554 |||||||||||| | |||||||||||||||||||| |||||||||||||||| || |||| Sbjct 1406 GGTCACGCCGAGAATAAAGTTTAGGTTCATACAAAAACATCAAGCTTCCATTGGAGAAAC 1465 Query 1555 AGAGTAAGCTaaaaaaaTACCCAACCTTTGAAAACATGTTTTGCACATTTCGATTCCTGt 1614 |||||||| ||||||| |||| | ||| ||||||||||||||||||||| |||||||| Sbjct 1466 AGAGTAAGTTAAAAAA---CCCAGCTTTTAAAAACATGTTTTGCACATTTCAATTCCTGT 1522 Query 1615 ttttttttATTCTTG-----GTTTGATCATTGATGGGTGTTGTTGCTTCCATCA-AAAGC 1668 |||||||| || || |||||||||||||| |||||||||||||| ||| ||| | Sbjct 1523 TTTTTTTTTTTTTTTTTATTGTTTGATCATTGATAGGTGTTGTTGCTTCTATCTTAAA-C 1581 Query 1669 AAAACACAGATGATTAGAGTGAGATGTGTTGTTTT---GACTCAAATGTGACAAAAAGAA 1725 ||| | |||||||||||||||| | ||||| |||| |||||||||||||| ||||||| Sbjct 1582 AAACCCCAGATGATTAGAGTGA-ACGTGTTTTTTTTTTGACTCAAATGTGACGAAAAGAA 1640 Query 1726 AAACATTATAGTAAAAACTAAAGCTTCTAGT 1756 |||||||||| |||| ||||||||||||| Sbjct 1641 AAACATTATA--AAAAT-TAAAGCTTCTAGT 1668 > Ahg483106 jgi|Araly1|483106|fgenesh2_kg.4__2166__AT2G40480.1 Length=1678 Score = 436 bits (236), Expect = 2e-121 Identities = 761/1000 (76%), Gaps = 93/1000 (9%) Strand=Plus/Plus Query 377 GGTGGTCGTGGGTT-CTGGGTTCCCTTCAATCTTGAAGACAATTACGACTGTGTGGGAGA 435 ||||||||| |||| |||||||| ||||| |||||||||| || | | | ||||| Sbjct 220 GGTGGTCGT-GGTTATTGGGTTCCTTTCAAGCTTGAAGACAGTTTC-A----AT-GGAGA 272 Query 436 ATTTGACATAAAGAGAATGGAAGAACA-GACAGTGGAGCTTGAGAAGGATCTGATTATGA 494 |||||||||||||||||||||||| || | ||| |||||||||||||||||||||| ||| Sbjct 273 ATTTGACATAAAGAGAATGGAAGAGCATG-CAGCGGAGCTTGAGAAGGATCTGATTGTGA 331 Query 495 AAGAG-TTAGAGACTCTGGATCTTCTTGAAGCTCTTGGATCAACCAAAAGGATTTTTGAA 553 ||||| || || ||| ||||| |||| ||||| ||||||||||| |||||||| ||||| Sbjct 332 AAGAGCTT-GAAACTTTGGATGTTCTGGAAGCACTTGGATCAACGAAAAGGATCGTTGAA 390 Query 554 GATTTGAAGTGGCAGCTTCAGCA-GCAAGCACTGAGATGCAAGGAGACCCCTCAACATTT 612 ||||||||| ||||||||||||| | |||| |||||||||| || || |||| || Sbjct 391 GATTTGAAGCGGCAGCTTCAGCAAG-AAGCCCTGAGATGCACTGA-ACATCTCAG--TTC 446 Query 613 GCGTTCACACTCCAAAGAGATGGTCGATGAGCACTGCCATCGTAATCC----CCTGAAGT 668 | | | || ||||||||| ||||||||| ||||||| ||||| ||| | || Sbjct 447 A-GAT-A---TC-AAAGAGATGAACGATGAGCATTGCCATCACAATCCTATTCCT-ATGT 499 Query 669 C-TC-CG-GATCTGATGACCATGGAAATGAAGCAAGCTG-GTATGAATCTTTGTAAAACC 724 | || | |||||||| |||||| |||||||||| | ||||||||| |||||||| Sbjct 500 CATCTCCTGATCTGATCTTGATGGAATTGAAGCAAGCCAAG-ATGAATCTTGGTAAAACC 558 Query 725 ATGGATGATCTTGCGTTGATCCACTCTTATGCTGAATCTCTGAATATGAAAACGAAGGAA 784 ||||||||||||| ||||||| || | || ||| ||||| |||| ||| | ||||||| Sbjct 559 ATGGATGATCTTGTACTGATCCAATCCTCTGTTGAGTCTCTCAATAAGAAGATGAAGGAA 618 Query 785 GAGAAAGATGTCCTTGGAGTAGCGTCTCTAGCGGAGG-AACTTAACAGTTTG-A--A--G 838 ||||||||| |||||| || || | | |||| || |||||| ||||| | | | Sbjct 619 GAGAAAGATTTCCTTG-AGAAGA--CACGAGCGAAGCTAACTTATGGGTTTGGAGGACCG 675 Query 839 -T-T-TAAACCAGCAGGTCCTGA-TCA-AGTAGAGAGATTCAATACCGAGAATTTACCAG 893 | | | | | | ||| |||| || | || || | | || ||| | || || |||| Sbjct 676 GTGTCTCTAGCTG-AGGAGCTGAGTCGGATTA-AG-G-TA-AA-ACC-ACAAGTT-CCAG 727 Query 894 -TGAATCCAC-AATGTGAACAGATTAAGATGGTAGTTGAAACCTATGATACAGCTTTCCA 951 |||| |||| || | |||||| |||||||||| | ||||||| |||| || | || | Sbjct 728 ATGAA-CCACTAAGG-GAACAGGTTAAGATGGTTGCTGAAACCGATGAAACGGGGTTAAA 785 Query 952 TAAACAGAGCAA-AACCTGCCCGAGAACTGCAGATATGAGATTGGTTGCTGCAAGAAAAA 1010 |||| ||| |||| | | |||||||||||| ||||||||||||||||| ||||||| Sbjct 786 CCTGCAGAACAAGAACC-GTCTGAGAACTGCAGAGATGAGATTGGTTGCTGCTAGAAAAA 844 Query 1011 TGGAAGAGGCAGCAAGAGCAGCGGAAGCACTTGCGCTTGCTGAAATGACCATATTATC-- 1068 ||||||| || |||||||||||||||||||||||| |||||||||| || || ||||| Sbjct 845 TGGAAGAAGCTGCAAGAGCAGCGGAAGCACTTGCGATTGCTGAAATTACAATGTTATCAT 904 Query 1069 C-AGCAGAAGAAA-CCAAGACGCTC-T-C----T---GCTTCCCTA-AGACACCATGTTT 1116 | | | | |||| |||||||| | | | | |||| || | || | ||| | | Sbjct 905 CCAACGGT-GAAAGCCAAGACGATGATTCGGAATTTTGCTTTCC-AGAGCCTCCAAGATC 962 Query 1117 TCCATTAACACTTAAAGCAC-A-G-AT-GAACAAAGAATTATCCACC-A-A-T-GTCTCA 1168 ||| |||||| | || || | | || || || || || |||||| | | | | |||| Sbjct 963 TCCCGTAACACCGAGAGGACTAAGGATTGAT-AATGACTTCTCCACCGATAATAG-CTCA 1020 Query 1169 AGAATAGAGA-TCTTGAGGAAGCTGGAGGAAGCTAACGAAGAAGTTAAACAAAGTAAACA 1227 |||| || || | || | |||||| |||||||||| ||||| |||||||||||||||||| Sbjct 1021 AGAAGAG-GAATTTTAAAGAAGCTTGAGGAAGCTACCGAAGGAGTTAAACAAAGTAAACA 1079 Query 1228 AGCCTTGGAAGTTGCGTTAAACCGGGTAGAAATCGCTAGTGTGAAGCAACTTGAAGCAGA 1287 ||| || |||| |||||||||||| ||||| || |||| |||||||||||||| ||| || Sbjct 1080 AGCTTTAGAAGCTGCGTTAAACCGAGTAGAGATTGCTAATGTGAAGCAACTTGCAGCTGA 1139 Query 1288 AGAGGCATTTCGGCAG-TGGAACATA-GAGTCATGGAAAG 1325 | | || |||| | | |||| || | || |||| ||||| Sbjct 1140 AAATGC-TTTCCGTGGGTGGA-CAAAAGACTCATCGAAAG 1177 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65896123850 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5