BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56270.1
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486067 jgi|Araly1|486067|fgenesh2_kg.5__2059__AT3G56270.1 2045 0.0
Ahg483106 jgi|Araly1|483106|fgenesh2_kg.4__2166__AT2G40480.1 436 2e-121
> Ahg486067 jgi|Araly1|486067|fgenesh2_kg.5__2059__AT3G56270.1
Length=1668
Score = 2045 bits (1107), Expect = 0.0
Identities = 1521/1711 (89%), Gaps = 67/1711 (4%)
Strand=Plus/Plus
Query 70 GTGACTTTCATTACCGAGAAAAACACAATCATAGAGAAGCTCTCAATCTTGTTTGCTTCT 129
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1 GTGACTTTCATTACCGAG-AAAACATAATTATAGAGAAGCTCTCAATCTTGTTTGCTTCT 59
Query 130 GATCAGTAACTATGATTACTGTAAATAGATCACTCTTTCATTATCTTTCCCTTTCACTTG 189
| ||||| ||||||||||||| ||| |||| |||||| ||||||||||||||||| ||
Sbjct 60 GGGCAGTATCTATGATTACTGT-AATGGATCCCTCTTTAATTATCTTTCCCTTTCAAGTG 118
Query 190 TACAAACCAATTCGTTCT-C-GAGCTAACGGAAATGGCGGAGAGGCAAC-AGAGCCCTGC 246
|||| |||| || ||||| | |||| | || |||||||| | ||| | | | ||||||
Sbjct 119 TACACACCAGTTGGTTCTCCAGAGC--GCAGAGATGGCGGAAATGCATCTA-AACCCTGC 175
Query 247 GGCGGAGACGATTCCCGGTACACCCGTAATCCGGGAAGTGAGAACCGGAACCGGGTCCGA 306
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 176 GGCGGAGACGATTCCCGGTACACCCGTAATCCGGGAGGTGAGAACCGGATCCGGGTCCCA 235
Query 307 GAATTTCAACCCGGAGAATACAAGGAGAGGATG-CTTGAGAGCTGAAATCGACATTTCTC 365
||||||||||||||||| ||||||||||||| | | ||||||||||||| |||||||||
Sbjct 236 GAATTTCAACCCGGAGAGTACAAGGAGAGGAGGAC-TGAGAGCTGAAATGGACATTTCTT 294
Query 366 CACAGTTATATGGTGGTCGTGGGTTCT-GGGTTCCCTTCAATCTT-GAAGACAATTACGA 423
||| ||||| ||||||||||||| ||| ||||||| ||| ||||| ||| |||| |||||
Sbjct 295 CACCGTTATTTGGTGGTCGTGGG-TCTCGGGTTCCGTTCGATCTTGGAA-ACAACTACGA 352
Query 424 CTGTGTGGGAGAATTTGACATAAAGAGAATGGAAGAACAGACAGTGGAGCTTGAGAAGGA 483
| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 353 CGGTGTGGGAGATTTTGACATAAAGAGGATGAAAGAACAGACAGTGGAGCTTGAGAAGGA 412
Query 484 TCTGATTATGAAAGAGTTAGAGACTCTGGATCTTCTTGAAGCTCTTGGATCAACCAAAAG 543
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 413 TCTGATTATGAAAGAGTTAGAAACACTAGATCTTCTTGAAGCTCTTGGATCAACCAAAAG 472
Query 544 GATTTTTGAAGATTTGAAGTGGCAGCTTCAGCAGCAAGCACTGAGATGCAAGGAGACCCC 603
||| |||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||
Sbjct 473 CATTGTTGAAGATTTGAAGTGGCAGCTCCAGCAACAAGCACTTAGATGCATGGAGACCCC 532
Query 604 TCAACATTTGCGTTCACAC-TCCAAAGAGATGGTCGATGAGCACTGCCATCGTAATCCCC 662
||||||||||||||||||| | |||||||||| ||||||| || | | ||| ||
Sbjct 533 TCAACATTTGCGTTCACACAT-CAAAGAGATGATCGATGA--AC-G-C-TCG------CC 580
Query 663 TGAAGTCTCCGGATCTGATGACCATGGAAATGAAGCAAGCTGGTATGAATCTTTGTAAAA 722
| | ||| || | | | ||||| |||||||||| |||||||| || ||||||
Sbjct 581 AG-A-TCT---GA-C-CCT---CTTGGAATTGAAGCAAGCAAGTATGAATATTGGTAAAA 630
Query 723 CCATGGATGATCTTGCGTTGATCCACTCTTATGCTGAATCTCTGAATATGAAAACGAAGG 782
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 631 CCATGGATGATCTTGCGTTGATCCACTCTTATGCTGAATCTCTGAATATAAAAACGAAGG 690
Query 783 AAGAGAAAGATGTCCTTGGAGTAGCGTCTCTAGCGGAGGAACTTAACAGTTTGAAGTTTA 842
|||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 691 AAGAGAAAGATGTCTTTGGAGTAGCGTCTCTAGCTGAGGAGCTTAACAGTTTGAGGTTTA 750
Query 843 AACCAGCAGGTCCTGATCAAGTAGAGAGATTCAATACCGAGAATTTAC-CAGTGAATCCA 901
| ||||||||||||||| ||| |||||| |||||||||||| |||||| | ||||| |||
Sbjct 751 ACCCAGCAGGTCCTGATGAAGGAGAGAGGTTCAATACCGAGGATTTACTC-GTGAACCCA 809
Query 902 CAATGTGAACAGATTAAGATGGTAGTTGAAACCTATGATACAGCTTTCCATAAACAGAGC 961
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 810 CAATGTGAACAGATTAAGATGGTAGTTGAAACCAATGATACAGCTTTTCATAAACAGAGC 869
Query 962 AAAACCTGCCCGAGAACTGCAGATATGAGATTGGTTGCTGCAAGAAAAATGGAAGAGGCA 1021
|| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 870 AAGACCTGCCTGAGAACTGCAGAAATGAGATTGGTTGCTGCAAGAAAAATGGAAGAGGCT 929
Query 1022 GCAAGAGCAGCGGAAGCACTTGCGCTTGCTGAAATGACCATATTATCCAGCAG-AAGAAA 1080
||| ||||||||||||||||||||||| ||||||||||||||||||||||| | || |||
Sbjct 930 GCACGAGCAGCGGAAGCACTTGCGCTTTCTGAAATGACCATATTATCCAGC-GTAAAAAA 988
Query 1081 CCAAGACGC-TCTCTGCTTCCCTAAGACACCATGTTTTCCATTAACACTTAAAGCACAGA 1139
| ||||| | | |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 989 CGAAGACACAT-TCTGCTTCCCGGAGCCACCATGTTTTCCATTAACACTTAAAGCACAGA 1047
Query 1140 TGAACAAAGAATTATCCACCAATGTCTCAAGAATAGAGATCTTGAGGAAGCTGGAGGAAG 1199
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TGAACAAAGAATTATCCGCCAATGTCTCAAGAATAGAGATCTTGAGGAAGCTGGAGGAAG 1107
Query 1200 CTAACGAAGAAGTTAAACAAAGT-AAACAAGCCTTGGAAG-TTGCGTTAAACCGGGTAGA 1257
|||| |||||||||||||||||| ||| |||| |||| || |||||||||||||||||
Sbjct 1108 CTAATGAAGAAGTTAAACAAAGTCAAA-AAGCTTTGG-AGACGGCGTTAAACCGGGTAGA 1165
Query 1258 AATCGCTAGTGTGAAGCAACTTGAAGCAGAAGAGGCATTTCGGCAGTGGAACATAGAGTC 1317
| |||| | | |||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 1166 AGTCGCCAATACGAAGCAACTTGAAGCACAAGATGCGTTTCGGCAGTGGAACATAGAGTC 1225
Query 1318 ATGGAAAGACCAGAAAGCTGTTGGAGCAAAACGCTCGATGAAAAGAGAAAGCTTTCCTCA 1377
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1226 ATGGAAAGACCAGAAAGCTGTTGGAGCAAAACGCTCAATGAAAAGAGACAGCTTTCCTCA 1285
Query 1378 GCGCTCTTTCTTGAGCCATATCAATCAGCACGAGCCACTGATCGATCTCCCTGAGCCAAT 1437
||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1286 ACGCTCCTTCTTGAGCCATGTGAAGCAGCACGAGCCACTGATCGATCTCCCTGAGCCAAT 1345
Query 1438 GCTGAAACGTAACGTCTCAATGGGTAAT---GCTCTTAACCGAAAAGATGAGAAACAGTT 1494
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1346 GCTGAAACGTAACGTCTCAATGGGTAATAATGTTCTTAACCGAAAAGATGAGAAACAGTT 1405
Query 1495 GGTCACGCCGAGGAGAAAGTTTAGGTTCATACAAACACATCAAGCTTCCATTAGAAAAAC 1554
|||||||||||| | |||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 1406 GGTCACGCCGAGAATAAAGTTTAGGTTCATACAAAAACATCAAGCTTCCATTGGAGAAAC 1465
Query 1555 AGAGTAAGCTaaaaaaaTACCCAACCTTTGAAAACATGTTTTGCACATTTCGATTCCTGt 1614
|||||||| ||||||| |||| | ||| ||||||||||||||||||||| ||||||||
Sbjct 1466 AGAGTAAGTTAAAAAA---CCCAGCTTTTAAAAACATGTTTTGCACATTTCAATTCCTGT 1522
Query 1615 ttttttttATTCTTG-----GTTTGATCATTGATGGGTGTTGTTGCTTCCATCA-AAAGC 1668
|||||||| || || |||||||||||||| |||||||||||||| ||| ||| |
Sbjct 1523 TTTTTTTTTTTTTTTTTATTGTTTGATCATTGATAGGTGTTGTTGCTTCTATCTTAAA-C 1581
Query 1669 AAAACACAGATGATTAGAGTGAGATGTGTTGTTTT---GACTCAAATGTGACAAAAAGAA 1725
||| | |||||||||||||||| | ||||| |||| |||||||||||||| |||||||
Sbjct 1582 AAACCCCAGATGATTAGAGTGA-ACGTGTTTTTTTTTTGACTCAAATGTGACGAAAAGAA 1640
Query 1726 AAACATTATAGTAAAAACTAAAGCTTCTAGT 1756
|||||||||| |||| |||||||||||||
Sbjct 1641 AAACATTATA--AAAAT-TAAAGCTTCTAGT 1668
> Ahg483106 jgi|Araly1|483106|fgenesh2_kg.4__2166__AT2G40480.1
Length=1678
Score = 436 bits (236), Expect = 2e-121
Identities = 761/1000 (76%), Gaps = 93/1000 (9%)
Strand=Plus/Plus
Query 377 GGTGGTCGTGGGTT-CTGGGTTCCCTTCAATCTTGAAGACAATTACGACTGTGTGGGAGA 435
||||||||| |||| |||||||| ||||| |||||||||| || | | | |||||
Sbjct 220 GGTGGTCGT-GGTTATTGGGTTCCTTTCAAGCTTGAAGACAGTTTC-A----AT-GGAGA 272
Query 436 ATTTGACATAAAGAGAATGGAAGAACA-GACAGTGGAGCTTGAGAAGGATCTGATTATGA 494
|||||||||||||||||||||||| || | ||| |||||||||||||||||||||| |||
Sbjct 273 ATTTGACATAAAGAGAATGGAAGAGCATG-CAGCGGAGCTTGAGAAGGATCTGATTGTGA 331
Query 495 AAGAG-TTAGAGACTCTGGATCTTCTTGAAGCTCTTGGATCAACCAAAAGGATTTTTGAA 553
||||| || || ||| ||||| |||| ||||| ||||||||||| |||||||| |||||
Sbjct 332 AAGAGCTT-GAAACTTTGGATGTTCTGGAAGCACTTGGATCAACGAAAAGGATCGTTGAA 390
Query 554 GATTTGAAGTGGCAGCTTCAGCA-GCAAGCACTGAGATGCAAGGAGACCCCTCAACATTT 612
||||||||| ||||||||||||| | |||| |||||||||| || || |||| ||
Sbjct 391 GATTTGAAGCGGCAGCTTCAGCAAG-AAGCCCTGAGATGCACTGA-ACATCTCAG--TTC 446
Query 613 GCGTTCACACTCCAAAGAGATGGTCGATGAGCACTGCCATCGTAATCC----CCTGAAGT 668
| | | || ||||||||| ||||||||| ||||||| ||||| ||| | ||
Sbjct 447 A-GAT-A---TC-AAAGAGATGAACGATGAGCATTGCCATCACAATCCTATTCCT-ATGT 499
Query 669 C-TC-CG-GATCTGATGACCATGGAAATGAAGCAAGCTG-GTATGAATCTTTGTAAAACC 724
| || | |||||||| |||||| |||||||||| | ||||||||| ||||||||
Sbjct 500 CATCTCCTGATCTGATCTTGATGGAATTGAAGCAAGCCAAG-ATGAATCTTGGTAAAACC 558
Query 725 ATGGATGATCTTGCGTTGATCCACTCTTATGCTGAATCTCTGAATATGAAAACGAAGGAA 784
||||||||||||| ||||||| || | || ||| ||||| |||| ||| | |||||||
Sbjct 559 ATGGATGATCTTGTACTGATCCAATCCTCTGTTGAGTCTCTCAATAAGAAGATGAAGGAA 618
Query 785 GAGAAAGATGTCCTTGGAGTAGCGTCTCTAGCGGAGG-AACTTAACAGTTTG-A--A--G 838
||||||||| |||||| || || | | |||| || |||||| ||||| | | |
Sbjct 619 GAGAAAGATTTCCTTG-AGAAGA--CACGAGCGAAGCTAACTTATGGGTTTGGAGGACCG 675
Query 839 -T-T-TAAACCAGCAGGTCCTGA-TCA-AGTAGAGAGATTCAATACCGAGAATTTACCAG 893
| | | | | | ||| |||| || | || || | | || ||| | || || ||||
Sbjct 676 GTGTCTCTAGCTG-AGGAGCTGAGTCGGATTA-AG-G-TA-AA-ACC-ACAAGTT-CCAG 727
Query 894 -TGAATCCAC-AATGTGAACAGATTAAGATGGTAGTTGAAACCTATGATACAGCTTTCCA 951
|||| |||| || | |||||| |||||||||| | ||||||| |||| || | || |
Sbjct 728 ATGAA-CCACTAAGG-GAACAGGTTAAGATGGTTGCTGAAACCGATGAAACGGGGTTAAA 785
Query 952 TAAACAGAGCAA-AACCTGCCCGAGAACTGCAGATATGAGATTGGTTGCTGCAAGAAAAA 1010
|||| ||| |||| | | |||||||||||| ||||||||||||||||| |||||||
Sbjct 786 CCTGCAGAACAAGAACC-GTCTGAGAACTGCAGAGATGAGATTGGTTGCTGCTAGAAAAA 844
Query 1011 TGGAAGAGGCAGCAAGAGCAGCGGAAGCACTTGCGCTTGCTGAAATGACCATATTATC-- 1068
||||||| || |||||||||||||||||||||||| |||||||||| || || |||||
Sbjct 845 TGGAAGAAGCTGCAAGAGCAGCGGAAGCACTTGCGATTGCTGAAATTACAATGTTATCAT 904
Query 1069 C-AGCAGAAGAAA-CCAAGACGCTC-T-C----T---GCTTCCCTA-AGACACCATGTTT 1116
| | | | |||| |||||||| | | | | |||| || | || | ||| | |
Sbjct 905 CCAACGGT-GAAAGCCAAGACGATGATTCGGAATTTTGCTTTCC-AGAGCCTCCAAGATC 962
Query 1117 TCCATTAACACTTAAAGCAC-A-G-AT-GAACAAAGAATTATCCACC-A-A-T-GTCTCA 1168
||| |||||| | || || | | || || || || || |||||| | | | | ||||
Sbjct 963 TCCCGTAACACCGAGAGGACTAAGGATTGAT-AATGACTTCTCCACCGATAATAG-CTCA 1020
Query 1169 AGAATAGAGA-TCTTGAGGAAGCTGGAGGAAGCTAACGAAGAAGTTAAACAAAGTAAACA 1227
|||| || || | || | |||||| |||||||||| ||||| ||||||||||||||||||
Sbjct 1021 AGAAGAG-GAATTTTAAAGAAGCTTGAGGAAGCTACCGAAGGAGTTAAACAAAGTAAACA 1079
Query 1228 AGCCTTGGAAGTTGCGTTAAACCGGGTAGAAATCGCTAGTGTGAAGCAACTTGAAGCAGA 1287
||| || |||| |||||||||||| ||||| || |||| |||||||||||||| ||| ||
Sbjct 1080 AGCTTTAGAAGCTGCGTTAAACCGAGTAGAGATTGCTAATGTGAAGCAACTTGCAGCTGA 1139
Query 1288 AGAGGCATTTCGGCAG-TGGAACATA-GAGTCATGGAAAG 1325
| | || |||| | | |||| || | || |||| |||||
Sbjct 1140 AAATGC-TTTCCGTGGGTGGA-CAAAAGACTCATCGAAAG 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65896123850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5