BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56280.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348712 jgi|Araly1|348712|fgenesh1_pg.C_scaffold_5002104 1314 0.0
> Ahg348712 jgi|Araly1|348712|fgenesh1_pg.C_scaffold_5002104
Length=1089
Score = 1314 bits (711), Expect = 0.0
Identities = 818/870 (94%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 13 TCGAGTTCGTGGATGTTAGACCCGATCACCTTACGAAAACTTGGCTGTCTCGGCCAAGGC 72
||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 223 TCGAGTTCGTGGATGTTAGACGCGACCACCTTACCAAAACTTGGCTGTCTCGGCCAAGGC 282
Query 73 GAGCATGGCTACATCTCTCTCGTTCAAACCACCGATGGTTTACTCATGGCTAAGAAAACA 132
| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 283 CACCATGGCTACATCTCTCTCGTGAAAACCCCCGATGGTCTACTCATGGCTAAGAAAACA 342
Query 133 TCTCTCCGCAAATACTCAGAGAATCTCGAGAAAGAAC-AGAGGATCTTACATCACTTCAA 191
|||| |||||||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct 343 TCTCACCGCAAATACTCAGAGGATCTCGAGAAAGAACTA-AGGATCTTACATCACTTCAA 401
Query 192 CTCGATCAATTTCAACATCGTAAGACCCACAAGCCCTATCGTCTATTACGAAACCATGCC 251
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 402 CTCCATCAATTTCAACATCGTAAGACCCACAAGCCCTATCATCTATTACGAAACCATGCC 461
Query 252 GTTCAATGTCAAGATCTGCTCAATTTACATGGAAATCGCACCACATGGTTCACTCGGAGA 311
| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 462 GGTAAATGTCAAGATCTGCTCTATTTACATGGAAATCGCACCACATGGTTCACTCGAAGA 521
Query 312 CATGATAATCAAAGCCGGTGGGAGATTACCGGAGAACGTGGTCGGGTACTGCACTCTCTT 371
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CATGATGACCAAAGCCGGTGGGAGATTACCGGAGAACGTGGTCGGGTACTGCACTCTCTT 581
Query 372 GATTCTTGAATGACTCAAGGATCTTCACAAAGATGGTTACGTTCACTGTGATCTCGGGCC 431
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 582 GATTCTTGAAGGACTCAAGGATCTTCACAAAGATGGTTACGTCCACTGTGATCTCATGCC 641
Query 432 AGAGAACATGCTTATCTTCCCGACCTACACTCATGGAGAGCTTTGTGAACTCAAACTCGC 491
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 642 AGAGAACATACTTATCTTCCCGACCTACACTCATGGAGAGCTTTGTGAACTCAAACTTGC 701
Query 492 TGATTTCGGCTTAGCAAAAGAGCCTAATGGACCTAATCCATTGGATGGATCTCTCTTCGA 551
||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 702 TGATTTCGGTTTAGCCAAGGAGCCTAATGGACCTAATCCATTGGATGGGTCTCTGTTCCA 761
Query 552 GGGATGTCCTGCA-TATTTGGCTCCAGAGGCGGTCGGGCCATGTCGAATTATTTCGTCTG 610
|||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GGGAAATCC-GGAGTATTTGGCTCCAGAGGCGGTCGGGCCATGTCGAATTATTTCGTCTG 820
Query 611 CGGTTGATATTTGGTCTTTAGGTGTTATGGTAATCGAGATGTTGGGGGTTAATGGAGGAG 670
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct 821 CGGTTGATATTTGGTCTTTAGGTGTTATGGTAATTGAGATGTTGGGGGCTAATGTAGGAG 880
Query 671 GAAGAAATGATTACTTGTCACAGACGCTATCATCGATGGCTTGGGACTTTGTGAGGAAAT 730
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 881 GAAGAAATGATTACTTGTCAGAGACGCTATCACCGATGGCTTGGGACTTTGTGAGGAAAT 940
Query 731 GCAAAGTGCATGACTGGGAG-AGTAGAGCCACCGCAGAGGAGCTGCTGAGCCATCCTTTC 789
||||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 941 GCAAAGTGCGTGATTGGGAGGA-TAGAGCCACCGCAGAGGAGCTGCTGAGCCATCCTTTT 999
Query 790 GTTAACCAAAGTATTGGGGTTCCACCGTTTGAGATGCTTCCTGTTCCTTATTGCTTAACT 849
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1000 GTTAACCAAAGTATTGGGGTTCCACCGCTTGAGATGCTTCCTGTTCCTCATTGCTTAACT 1059
Query 850 GATGGAGTGGTTCAAGGAAGGTTTTTCTGA 879
|| ||||||||||||||||||||||| |||
Sbjct 1060 GACGGAGTGGTTCAAGGAAGGTTTTTTTGA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5