BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56290.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938584 jgi|Araly1|938584|scaffold_502775.1 817 0.0
> Ahg938584 jgi|Araly1|938584|scaffold_502775.1
Length=559
Score = 817 bits (442), Expect = 0.0
Identities = 524/562 (93%), Gaps = 12/562 (2%)
Strand=Plus/Plus
Query 14 GTGAAAACCATAAGATGGGTTTTAGAGCACTGCCTCTTCAACACAGCAGTGGGTTCATCT 73
||||||| || ||||||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 7 GTGAAAATCACAAGATGGGTCTTAGAGCACTGCCAATTCAACACAACAGTGGATTCCTCT 66
Query 74 CCACGACCAAAGTATCC-ATCTCAAGAACCTCGCCCAGGATTT-TCCGGAACCCTAGATG 131
| ||||||||||| || ||||||||||||||||| | ||||| |||||||||||||||
Sbjct 67 CTACGACCAAAGT-CCCGATCTCAAGAACCTCGCCGA-GATTTAGCCGGAACCCTAGATG 124
Query 132 GGTCGTTGTCTCAGCAAAGCAAGAGAAAGATGAGGATAAGAAGAAGAATGAAGAGGAGAC 191
||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 125 GGTCGTTGTCTCAGCAAAGCAAGAGAAAGAT---GATGAGAAGAAGAAGGAAGAGGAGAC 181
Query 192 TTCGTTGTTTACTCAATTAACGGATGCCTTGGACTTCTCACAAGTTCGATCGGAGAAAGA 251
|||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 182 TTCGTTGTTTACGAAATTAACTGATGCGTTGGACTTCTCACAAGTTCGGTCGGAGAAAGA 241
Query 252 CGCTGAGCTTCTCTACGAGGCTCGAGAAGCCACCAAATCTGGTCGCAAGATGACCCAAGA 311
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 242 CGCTGAGCTTCTCTACGAGGCTCGAGAAGCCACCAAATCTGGTGGCAAGATGACCCAAGA 301
Query 312 ACAGTATGGGGCATTGAGGAGAAAAATCGGAGGAACATACAAGGACTTTTTTAAATCCTA 371
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 302 ACAGTATGGGGCATTGAGGAGAAAAATCGGAGGGACGTACAAGGACTTCTTTAAATCCTA 361
Query 372 CGTTGAAGTGGATGGGCAATATGTGG-AGGAGGGATGGGTGGACAAAACATGTAAGATAT 430
|||||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||
Sbjct 362 CGTTGAAGTGGATGGGAAATATGTGGAAGAAGGG-TGGGTGGACAAAACATGTAAGATAT 420
Query 431 GCAAAAAGGACACAAAGGGTGAGGCAAGACAAGTGGACAAGTTAGGGAGATATGCTCATG 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCAAAAAGGACACAAAGGGTGAGGCAAGACAAGTGGACAAGTTAGGGAGATATGCTCATG 480
Query 491 TCTCTTGTCTTCAAAATCCTCCCTCTGGAAATTTCTTCACCAGACTCTTCTCTAGATGAT 550
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 TCTCTTGTCTTCAAAATCCTCCCTCTGGAAATTTCTTCACCAGGCTCTTCTCTAGATGAT 540
Query 551 GATGATCAATTTCCCAAATCAT 572
||| ||||||||||||||||
Sbjct 541 GAT---CAATTTCCCAAATCAT 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5