BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56320.1
Length=2424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898575 jgi|Araly1|898575|Al_scaffold_0005_2541 2534 0.0
Ahg934858 jgi|Araly1|934858|scaffold_402846.1 584 9e-166
> Ahg898575 jgi|Araly1|898575|Al_scaffold_0005_2541
Length=1809
Score = 2534 bits (1372), Expect = 0.0
Identities = 1704/1850 (92%), Gaps = 79/1850 (4%)
Strand=Plus/Plus
Query 314 ATGGGTGAAATTCAAGAAAGATTGTCAGTTTCATCATCTTCGTCTTCTTCATCATCCTCA 373
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGATATTCAAGAAAGATTGTCAGTTTCATCATCTTCGTCTTCTTCATCATCCTCA 60
Query 374 TTGTCACTATCAACGGCACTACCTAAAG-GAGATTCATTGCCGATAGATGCA-GATTCTT 431
|||||||||||||| ||| |||||||| | |||||||||| |||||| | | || ||||
Sbjct 61 TTGTCACTATCAACATCACAACCTAAAGCG-GATTCATTGCTGATAGA-GGAGGAATCTT 118
Query 432 GGATGATTGCAGAGGAGAGAGCTCATGAGATACTTTGCACTATCCAACCTGCCCTTGTTT 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GGATGATTGCAGAGGAGAGAGCTCATGAGATACTTTGCACTATCCAACCTGCCCTTGTTT 178
Query 492 CAGACAGAAGTAGGAATGAGATCATTGATTATGTACGAACTCTTATCATGAGTCATGAGG 551
|||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 179 CAGACAAAAGTAGGAATGAGATCATTGATTATGTACGAACTCTAATCAAGAGTCATGATG 238
Query 552 GAATTGAGGTCTTTTCATTTGGTTCAGTGCCACTAAAAACCTATCTCCCGGACGGGGATA 611
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 239 GAATTGAGGTCTTTTCATTTGGTTCAGTGCCACTAAAAACTTATCTCCCAGACGGAGATA 298
Query 612 TCGATCTGACTGTCCTAACTAAGCAAAATATGGATGACGATTTTTATGGACAATTGTGCA 671
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 299 TCGACCTGACTGTCCTAACTAAGCAAAATATGGACGACGATTTTTATGGACAATTATGCA 358
Query 672 GTAGGCTTCAGAATGAAGAAAGAGAATCTGAATTCCATGCAACAGATGTTCAG-TTTATC 730
| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 359 GCCGGCTTCAAAATGAAGAAAGAGAATCTGAATTCCATGCAACAGATGTTC-GATTTATC 417
Query 731 CCTGCACAGGTCAAGGTCATAAAATGCAATATCAGGAACATTGCTGTTGATATCTCTTTT 790
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 CCTGCACAGGTCAAGGTCATAAAATGCAATATCAGGAACATTGCTGTGGATATCTCTTTT 477
Query 791 AATCAAACGGCAGGTCTCTGTGCTTTATGTTTTCTGGAGCAGGTTGACCAACTCTTTGGG 850
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 478 AATCAAACGGCAGGTCTCTGTGCTTTATGTTTTCTCGAACAGGTTGACCAACTCTTTGGG 537
Query 851 AGAGATCATCTTTTCAAGCGTAGCATCATCCTTGTCAAAGCTTGGTGCTATTACGAGAGT 910
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 538 AGAGATCATCTTTTCAAGCGTAGCATCATCCTAGTCAAAGCTTGGTGCTATTACGAGAGT 597
Query 911 CGAATTCTTGGTGCTAACACTGGATTGATCTCAACATATGCATTGGCAGTACTAGTTTTG 970
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 CGAATTCTTGGTGCTAACACTGGATTGATCTCAACATATGCATTGGCAGTGCTAGTTTTG 657
Query 971 TACATCATCAACCTGTTTCATTCATCTTTATCTGGCCCTTTAGCGGTTCTGTATAAGTTC 1030
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TACATCATCAACCTATCTCATTCATCTTTATCTGGCCCTTTAGCGGTTCTGTATAAGTTC 717
Query 1031 TTGGATTACTATGGTTCATTTGATTGGAACAACTACTGTATCAGTGTCAATGGTCCTGTG 1090
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGGATTACTATGGTTCATTTGACTGGAACAACTACTGTATCAGTGTCAATGGTCCTGTG 777
Query 1091 CCAATATCGTCCCTTCCAGAACTTACAGCAGCATCTCCAGAAAATGGGCATGAGTTATTA 1150
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 778 CCAATATCTTCCCTTCCAGAACTTACGGCAGCTTCTCCAGAAAATGGGCATGAGTTATTG 837
Query 1151 CTTGACGAGAAGTTTTTAAGAAACTGTGTAGAGTTATATTCTGCTCCAACTAAAGCTGTT 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTTGACGAGAAGTTTTTAAGAAACTGTGTAGAGTTATATTCTGCTCCAACTAAAGCTGTT 897
Query 1211 GACTCAAATGGTCTTGAGTTTCCTATCAAACATCTCAACATAGTTGATCCTCTAAAATAC 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GACTCAAATGGTCTTGAGTTTCCTATCAAACATCTCAACATAGTTGATCCTCTAAAATAC 957
Query 1271 AGCAACAACCTCGGCAAAAGTGTTACACAAGGAAATGTCCAACGAATAAGACATGCTTTT 1330
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGCAACAACCTCGGAAAAAGTGTTACACAAGGAAATGTCCAACGAATAAGACATGCTTTT 1017
Query 1331 ACACTTGGAGCTCGAAAGCTAAGAGATGTTCTTTCACTACCTGGTGACACCATGGGATGG 1390
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1018 ACACTTGGAGCTCGAAAGCTCAGAGATGTTCTTTCATTACCTGGTGACACCATGGGATGG 1077
Query 1391 AGATTGGAGAAGTTCTTTCGTAACTCTTTGGAGAGAAATGGTAAGGGACAAAGGCAAGAT 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AGATTGGAGAAGTTCTTTCGTAACTCTTTGGAGAGAAATGGTAAGGGACAAAGGCAAGAT 1137
Query 1451 GTGAATGATCCCGTTACTGC-TTTCGGTACTGGAAGATCAGAATTATCTGAACTTAGTGG 1509
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 1138 GTGAATGATCCCGTTACTGCGTTT-GGTACTGGAAGATCAGAATTGTCTGAACTTAGTGG 1196
Query 1510 AGATTTCGATA-GTTCCTTTGGAAGACTTGTGTATGGGCAAATGTATCATGGGCATAGCT 1568
||||||||| | ||| |||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 1197 AGATTTCGA-AGGTTACTTTGGAAGACTTGTGTATGGGCAAA--T-TCATGGGTATAGCT 1252
Query 1569 TACCTGGAACATTTCAGCATGGCTATATCCCGGTTAG-T-TC----T-C--ACCTGAGTG 1619
||||||||||||||||||||||||||||||||||||| | || | | ||| ||||
Sbjct 1253 TACCTGGAACATTTCAGCATGGCTATATCCCGGTTAGTTCTCAAGTTACGGACCCAAGTG 1312
Query 1620 GTTGGGATATTGTTCGTCACCTTGTGACTTACCGAAAGAACGAGTTCCATCTTAGAAGTC 1679
|||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 1313 GTTGGGATATTGTTCGTCACCTTGTGACTTACCGGAAGAACGAGTTTTATCTTAAAAGTC 1372
Query 1680 TCAATGTATCAACCTCTATGCAGCCTTTTCCTTTGCATTCTTTACCTAATGGCTGTCAAA 1739
|||||| | | || | | | | ||||||||||||||||||||||
Sbjct 1373 TCAATG--T--A--TC-A---A--------C----C--TCTTTACCTAATGGCTGTCAAA 1408
Query 1740 ACATGAGAAAGACGAGAGGAACCGGCACTTATATTCCTGACATGAGTCAACAGGTATACT 1799
||| | || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1409 CCAT--G--AG--GAGAGGAACCGGCACTTATATTCCTGAAATGAGTCAACAGGTATACT 1462
Query 1800 CTGACAGGTTCAGAGAATCAGGTACTGGAACCTCATCAACGAATCATTTAGAAGCTTCCT 1859
|||||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||
Sbjct 1463 CTGACAGGTTCAGAGACTCATGTACTGGAACCTCATCAACTCATCACTTAGAAGCTTCCG 1522
Query 1860 CTGAGGCAATAGACAATGATGGAGCCAGTAGTTGCTGCAATCTTTCCGGTGAAGTGTCTA 1919
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1523 CTGAGGCAATAGACAACGATGGAGCCAGTAGTTGCTGCAATCTTTCTGGTGAAGTGTCTA 1582
Query 1920 CTTCTTGTACCAGTAACAAAGGAGAAGAATGTGTGAGACCAGAGA------GT------G 1967
||| ||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 1583 CTT---GTACCGGTAACAAAGGAGAAGAATGTGTGAGACCAGAGACTAATAGTAACCCAG 1639
Query 1968 -T--G---C-TG-----AAATCTCAAAGATCTGCGAATTTGGAGCTTGATGACAATTGCC 2015
| | | || |||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1640 ATCAGAAGCCTGTGCTGAAATCTCAAAGATCTGAGCATTTGGAGATTGATGACAATTGCC 1699
Query 2016 AATTTCCACCACCAGAAAACCTAGTAGAACCTAGAACTTCAAGCACATTGGTATTGGAAA 2075
|||||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 1700 AATTTCCACCACCACAAAACCCAGTAGAACCTCTATCTTCAAGCACATTGGTATTGGAAA 1759
Query 2076 ATGGCAAAGAAGAGAGTATCAGATCCTCCCAAACCATGAACGGCTCTTGA 2125
||||||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct 1760 ATGGCAAAGAAGAGAACAGCAGATCCTCCCAAACCATGAACGGTTCTTGA 1809
> Ahg934858 jgi|Araly1|934858|scaffold_402846.1
Length=1594
Score = 584 bits (316), Expect = 9e-166
Identities = 876/1137 (77%), Gaps = 75/1137 (7%)
Strand=Plus/Plus
Query 412 GCCGATAGATGCAG-ATTCTTGGATGATTGCAGAGGAGAGAGCTCATGAGATAC--TTTG 468
||| |||| || || ||| ||| ||||||| ||||| || ||||| ||||||| ||||
Sbjct 101 GCCAATAGGTGAAGAATT-GTGGTTGATTGCTGAGGAAAGGGCTCAGGAGATACTATTTG 159
Query 469 CACTATCCAACCTGCCCT-TGTTTCAGACAGAAGTAGGAATGAGATCATTGATTATGTAC 527
| | ||||||||| | | ||||||| ||| |||||||||||||||| || || | |
Sbjct 160 C-C-ATCCAACCT-ATGTATCTTTCAGAAAGATGTAGGAATGAGATCATCAATCATCT-C 215
Query 528 GA-ACTCTTATCATGAG-TCATGAGGGAATTGAGGTCTTTTCATTTGGTTCAGTGCCACT 585
| |||||||| | | | | | |||||||||||||||| ||||||||| |||||| |
Sbjct 216 CAGACTCTTATGA-GGGAACGTCTTGGAATTGAGGTCTTTTTATTTGGTTCGGTGCCATT 274
Query 586 AAAAACCTATCTCCCGGACGGGGATATCGATCTGACTGTCCTAACTAAGCAAAATATGGA 645
||||||||||||||| || || ||||| |||||||| || |||||| | ||||||
Sbjct 275 AAAAACCTATCTCCCAGATGGAGATATTGATCTGACAGTTCTAACTCCTTATGGTATGGA 334
Query 646 TGACGA-T-TTTTATGGACAATTGTGCAGTAGGCTTCAGAATGAAGAAA---GAGAATCT 700
|| || | | || | | |||| | | || ||| ||| | |||| |||||||
Sbjct 335 GGAGGACTGTGCTAAAG-C-ATTGCGTAATATACTT--GAA-GCTGAAAGGGGAGAATCA 389
Query 701 GAATTCCATGCAACAGATGTTCAGTTTATCCCTGCACAGGTCAAGGTCATAAAATGCAAT 760
|| ||||| | ||| ||||| |||| ||||| ||||||||||||||||||||| |||| |
Sbjct 390 GATTTCCAAGTAACTGATGTCCAGTATATCCATGCACAGGTCAAGGTCATAAAGTGCACT 449
Query 761 ATCAGGAACATTGCTGTT-GATATCTCTTTTAATCAAACGGCAGGTCTCTGTGCTTTATG 819
||||||||| ||||| || |||||||| || ||||||| ||| || || | |||||||||
Sbjct 450 ATCAGGAACGTTGCT-TTGGATATCTCCTTCAATCAAATGGCGGGACTATCTGCTTTATG 508
Query 820 TTTTCTGGAGCAGGTTGACCAA-CTCTTTGGGAGAGATCATCTTTTCAAGCGTAGCATCA 878
|||||||||||||||||||| || ||||| ||||| ||||| ||||| ||||||||||
Sbjct 509 TTTTCTGGAGCAGGTTGACCGGGCT-TTTGGTAGAGACCATCTGTTCAAACGTAGCATCA 567
Query 879 TCCTTG-TCAAAGCTTGGTGCTATTACGAGAGTCGAATTCTTGGTGCTAACACTGGATTG 937
| ||| | || || ||||| | ||| || || || ||||| ||||| ||||||||||||
Sbjct 568 TT-TTGATTAAGGCCTGGTGTTTTTATGAAAGCCGTATTCTCGGTGCCAACACTGGATTG 626
Query 938 ATCTCAACATATGCATTGGC-AGTACTAGTTTTGTACATCATCAACCTGT-TTCATTCAT 995
|| || || ||||||||||| | |||| || ||| ||||| ||||| ||| || ||||||
Sbjct 627 ATTTCGACGTATGCATTGGCTA-TACTCGTCTTGAACATCGTCAACATGTCTT-ATTCAT 684
Query 996 CTTTATCTGGCCCTTTAGCGGTTCTGTATAAGTTCTTGGATTACTATGGTTCATTTGATT 1055
| |||||||||||||||| || |||||||||||| |||||| |||||| ||||||||||
Sbjct 685 CAGTATCTGGCCCTTTAGCTGTACTGTATAAGTTCATGGATTTCTATGGATCATTTGATT 744
Query 1056 GGAACAACTACTGTATCA-GTGTCAATGGTCCTGTGCCAATATCGTCCCTTCCAGA-ACT 1113
|| | || |||||||||| | |||| |||||| || || ||||| || ||||||| | |
Sbjct 745 GGGAGAATTACTGTATCACG-GTCACTGGTCCGGTCCCGATATCATCTTTTCCAGATA-T 802
Query 1114 TACAGCAGCATCTCCAGAAAATGGGCATGA-GTTATTACTTGACGAGAAGTTTTTAAGA- 1171
||| | | | | | ||||| | ||||| ||| || || || |||||||| || |||
Sbjct 803 TACGGAA--A-C-C-AGAAA-T---CATGAAGTT-TTCCTAGATGAGAAGTTCTTCAGAG 852
Query 1172 AACTGTGTAGAGTTATATTCTGCTCCAACTAAAGCTGTTGACTC-AA-ATGGTCTTGAGT 1229
|| || | |||| |||||| | ||| |||| | |||||| | || | || | | |
Sbjct 853 AA-TGCATTGAGTCATATTCGGGGCCAGCTAATGTTGTTGAAGCCAACA-GGAAAT-ATT 909
Query 1230 TTCCTATCAAACATCT-CAACATAGTTGATCCTCTAAAATACAGCAACAACCTCGG-CAA 1287
||||| | |||||| | ||||||| | |||||||| ||| ||||||| ||||| || |
Sbjct 910 TTCCTGTAAAACAT-TACAACATACTGGATCCTCTGAAACACAGCAATAACCTTGGACGT 968
Query 1288 AAGTGT-TACACAAGGAAATGTCCA-ACGAATAAGACAT-GCTTTTACACTTGGAGCTC- 1343
| |||| | || ||||||||| | | ||| |||||||| | ||||| | |||||||
Sbjct 969 A-GTGTGT-CAGAAGGAAATG-CGATACGTTTAAGACATTG-TTTTAGAAGGGGAGCTCA 1024
Query 1344 GAAAGCTAAGAGATGTTCTTTCACTACCTGGTGACACCATGGGATGGAGATTGGAGAAGT 1403
||| ||| |||||||| ||| |||||||||| || ||| |||| |||| | ||||||| |
Sbjct 1025 GAA-GCTCAGAGATGTGCTTACACTACCTGGAGAGACCGTGGGTTGGAAACTGGAGAACT 1083
Query 1404 TCTTTCGTAACTCTTTGGAGAGAAATGGTAAGGGACAAAGGCAAGATGT-GAATGATCCC 1462
||||| |||| || |||| || || |||||||||||||| ||||| || || || ||
Sbjct 1084 TCTTTGGTAATTCACTGGACAGGAACGGTAAGGGACAAAGACAAGACGTAGAG-GAGCCT 1142
Query 1463 GTTA-CT-GCTTTCGGTACTGGAAGATCAGAATTA-TCTGAA-CTTAGTGGAGATTT 1515
|| | | | ||| || ||||||| | |||| ||| ||| || ||||| ||||||||
Sbjct 1143 GTCATCCCG-TTT-GGCACTGGAAAAGCAGA-TTACTCT-AATCTTAGAGGAGATTT 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91340407510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5