BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56330.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898576 jgi|Araly1|898576|Al_scaffold_0005_2542 1934 0.0
> Ahg898576 jgi|Araly1|898576|Al_scaffold_0005_2542
Length=1296
Score = 1934 bits (1047), Expect = 0.0
Identities = 1219/1303 (94%), Gaps = 8/1303 (1%)
Strand=Plus/Plus
Query 1 ATGTTGTTGACTCTCTCTCCTAAAACCCTATCTTCTTCTTCCTTCTTCACTGTGCACAAA 60
||||||| ||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 1 ATGTTGTCAACTCTCTCTCCTAAAACCCTA---TCTTCTT-C--CTTCACTGTGCACAAA 54
Query 61 TCGCAAAACCCTAAATGTAAATCTCCAGATTCATGTCGATTCAAGAGCTT-GAAATGTAG 119
||||||||||||| ||||||||| ||| |||||||||||||| |||| || ||||||||
Sbjct 55 TCGCAAAACCCTAGATGTAAATCCCCAAATTCATGTCGATTCCAGAG-TTCTAAATGTAG 113
Query 120 TTTTGATCGAATTTTAGTGAAATCCGAGGTTCAAATTGAGAGGAATCTCGAATTTGAAAC 179
|| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 114 ATTCAATCCCATTTTCGTGAAATCCGAGGTTCAGATTGAGAGGAATCTCGAATTTGAAAC 173
Query 180 GGGAGAGACATTTTTCCGCCATGAAAGCGCTAGAGGACGAGACCTCGGTGTTTTGTCAGC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 174 GGGAGAGACATTTTTCCGCCATGAAAGCGCTAGAGGACGAGACCTCGGTGTTTTGTCGGC 233
Query 240 GACGCTATACAAGAGATCTAATGGAAGCTTACGGGTACTCGACGCAATGTGCGGATGTGG 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 234 GACGCTATACAAGAGATCTAATGGAAGCTTACGGGTACTTGACGCAATGTGCGGATGTGG 293
Query 300 AATTAGGTCGCTTCGTTATCTTGTGGAAGCTGAAGCTGATTTCGTGATGGCGAACGACGC 359
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 294 AATTAGGTCGCTTCGTTATCTTGTGGAAGCTGATGCTGATTTCGTGATGGCGAATGACGC 353
Query 360 AAATGATGATAATCGGAGAGTGATTACGGATAATTTGAGTAAAGTAGAGAGAGGTACTGG 419
|| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 354 GAACGATGCTAATCGGAGAGTGATTACGGATAATCTGAGTAAAGTAGAGAGAGGTGTTGG 413
Query 420 AGATGAGAGGAGATGGGTTGTGACTCATATGTTGGCTAATAAAGCGATGATTGAGAGATA 479
||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 414 TGATGAGAGGAGATGGGTCGTGACGCATATGTTGGCTAATAAAGCGATGATTGAGCGATA 473
Query 480 TATGGTTGCGGATTTCTTCGATATGATTGATATTGATTCGTTTGGAAGTGATTCTTCGTT 539
|||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||
Sbjct 474 TATGGTTGCGGATTTCTTCGATATGATTGACATTGATTCGTTTGGGAGCGATTCGTCGTT 533
Query 540 TTTGAGAGATGCGTTTAATGCATTGAGATTGGGTGGTTTGCTTTACTTGACGTCGACTGA 599
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 534 TTTGAGAGATGCGTTTAATGCATTGAGATTGGGTGGTTTGCTTTACCTCACGTCAACTGA 593
Query 600 TGGTTACTCTTCTGGTGGTCACAGACCTTATAATTCTTTAGCAGCTTATGGAGCATTTAT 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 594 TGGTTACTCTTCTGGTGGTCACAGACCTTATAATTCTTTAGCAGCCTATGGAGCATTTAT 653
Query 660 TCGACCAATGCCGTTTGGGAATGAGATTGGGCTGCGGATGCTTATAGGTGGAGCAGTGAG 719
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 654 TCGACCAATGCCATTTGGGAATGAGATTGGGCTACGGATGCTTATAGGCGGAGCAGTAAG 713
Query 720 AGAAGCTGCTCTGCTTGGTTATCATGTTACGCCTCTTTTCTCGTACTATTCTTATCACGG 779
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 714 AGAGGCCGCTCTGCTTGGTTATCATGTTACGCCTCTTTTCTCGTACTATTCTTATCATGG 773
Query 780 ACCTGTGTTTAGAGTCATGCTGAGGGTTCACCGTGGGAAGCTACATGAGGACAGGAACTA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ACCTGTGTTTAGAGTCATGCTGAGGGTTCACCGTGGGAAGCTACATGAGGACAGGAACTA 833
Query 840 TGGTTTTGTCACGCACTGTAATCTATGTGGCCATTCTCATACATTGAGATTCGATGAACT 899
|||||||||||||||||||||||| ||||| ||| |||| |||||||||| ||||||||
Sbjct 834 TGGTTTTGTCACGCACTGTAATCTGTGTGGTCATACTCAAACATTGAGATGGGATGAACT 893
Query 900 TGGTTTGATGGGATGTCCCTGCAGTGATACAAAGGCTTCTTCTTCACTGGTTGTGTCAGG 959
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 894 TGGTTTGATGGGATGTCCCTGCAGTGATACAAAGGCTTCTTCTTCACTAGTTGTGTCAGG 953
Query 960 ACCAATGTGGCTCGGACCGCTTCATGATGCATCCTATGTTACGGAAATGCTGGAATTGGC 1019
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 954 ACCAATGTGGCTTGGACCGCTTCATGATGCATCGTATGTTACGGAAATGCTGGAATTGGC 1013
Query 1020 AAAGGAATGGGGATGGGTCAGTGAAGGCACTGGCATGGATCTGGACAAGCTTCTCAGTAT 1079
|||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||
Sbjct 1014 AAAGGAATGGGGATGGGTCAGTGAAGACACTGGCATGGATCTAGAGAAGCTTCTCAGCAT 1073
Query 1080 AATGATTGAAGAAAGTGATCCCAGACTACCACCTGGATACACAAAAATGGATGAGATGGC 1139
||| || ||||| |||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 1074 AATTATCGAAGAGAGTGATCCAAGACTACCCCCTGGATACACCAAAATGGATGAGATGGC 1133
Query 1140 GAGCCGTGCGAAGATGAACTCACCTCCGTTGAAGAAGATGATGAGTGCACTAGTTAAGGA 1199
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CAGCCGGGCAAAGATGAACTCACCTCCGTTGAAGAAGATGATGAGTGCACTAGTTAAGGA 1193
Query 1200 GGGTTACGCTGCTAGCAGATCTCACATTATTCCCAATGCTCTTAAAACAGATTGTCCCAT 1259
||| ||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1194 GGGATACGCTGTTAGTAGATCTCACATTATCCCCAATGCTCTCAAAACAGATTGTCCCAT 1253
Query 1260 GTCCCATTTTGTTAGGATTGCCAAGGAAAATTTGCATAGTTAA 1302
||| ||||| || ||||||||||| || |||||||| ||||||
Sbjct 1254 GTCACATTTCGTAAGGATTGCCAAAGATAATTTGCAGAGTTAA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5