BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56340.1
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486074 jgi|Araly1|486074|fgenesh2_kg.5__2066__AT3G56340.1 1003 0.0
> Ahg486074 jgi|Araly1|486074|fgenesh2_kg.5__2066__AT3G56340.1
Length=642
Score = 1003 bits (543), Expect = 0.0
Identities = 610/643 (95%), Gaps = 1/643 (0%)
Strand=Plus/Plus
Query 4 TATTTCGCAAATATTAGGGTTCCTGCACTCTTCTTCTTCCCTGTCGCCGCATCAAAGAGA 63
||||| |||||| |||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 1 TATTTTGCAAATTTTAGGGTTACTGAACGCTTCTTCTTCCCTGTCGCCGCATCAAAGAGA 60
Query 64 ACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGACTTTCAAGCGCAGGAATGG 123
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 61 ACTGAAGCAATAAGCTTTTGAAGCTCTCTGCATCAACATGACTTTCAAGCGTAGGAATGG 120
Query 124 TGGCAGGAACAAGCATAACCGTGGTCATGTGAAACCAATCAGGTGTTCCAACTGTGGAAA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGCAGGAACAAGCATAACCGTGGTCATGTGAAACCAATCAGGTGTTCCAACTGTGGAAA 180
Query 184 GTGTTGCCCCAAGGACAAGGCGATTAAGAGATTTATCGTAAGGAACATTGTTGAGCAGGC 243
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 181 GTGTTGCCCCAAGGATAAGGCGATTAAGAGATTCATCGTCAGGAACATTGTTGAGCAGGC 240
Query 244 TGCTATTAGAGATGTTCAAGAAGCTAGCGTCTACGAAGGTTACACTCTCCCAAAGCTTTA 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TGCTATTAGAGATGTTCAAGAAGCTAGCGTCTACGAAGCTTACACTCTCCCAAAGCTTTA 300
Query 304 CGCTAAGACGCAGTACTGTGTCTCGTGTGCTATCCATTCTCACGTTGTGAGAGTCCGATC 363
|||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 301 CGCTAAGACGCAATACTGTGTCTCATGTGCTATCCACTCTCACGTTGTTAGAGTCCGATC 360
Query 364 CCGCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGGAGGATAC 423
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 CCGCACTAACCGTAGGGTTCGTACCCCACCACCTCGTTTCGCCAGACGCAAGGAGGATAC 420
Query 424 ACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGTGGTGCTCCTGCTGCTCC 483
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 TCCCAAGCCTGGACAGCCTGGTCAGGCTCCTCGCCCTGCTGGTGGTGCTCCTGCTGCTCC 480
Query 484 TCGTGCCTGAAGACTTCAAGAAGCTGGCAATCCGAAACTTCTTATATTCTAGTTTCAATC 543
|||||||| |||||||||||||||||||||||| |||||| || ||||||||||||| ||
Sbjct 481 TCGTGCCTAAAGACTTCAAGAAGCTGGCAATCCAAAACTTTTTTTATTCTAGTTTCAGTC 540
Query 544 TCTCTTTTGTCTGAAATTTTTGAAGATGTTTTCTACATTTTGTTAAAGATGATTTCGCCA 603
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 TCTCTGTTGTCTGAAATTTTTGAACATGTTTTCTACATTTTGTTAAAGATGATTTCGCCA 600
Query 604 TATTGGAGCTTTAAACGTTTCAGACCATTTTACCAGTTGATTT 646
||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 601 TAT-GGAGCTTTATATGTTTCAGACCATTTTACCAGTTGATTT 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24703650216
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5