BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56350.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324152 jgi|Araly1|324152|fgenesh1_pm.C_scaffold_5001696 1125 0.0
> Ahg324152 jgi|Araly1|324152|fgenesh1_pm.C_scaffold_5001696
Length=726
Score = 1125 bits (609), Expect = 0.0
Identities = 687/726 (95%), Gaps = 0/726 (0%)
Strand=Plus/Plus
Query 1 ATGACGACCACCGTTATTATCATTATCTTCGTTGCCATCTTCGCTACGACTCTTCACGAC 60
|||||||||||||| ||||||| ||||||| |||| ||||||||||||| |||||| ||
Sbjct 1 ATGACGACCACCGTCATTATCAGTATCTTCCTTGCGATCTTCGCTACGAGTCTTCAAAAC 60
Query 61 GCCAGAGGAGCAACCATGGAACCGTGTCTCGAATCAATGAAGACTGCTTCGCTTCCTGAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GCCAGAGGAGCAACCATGGAACCGTGTCTCGAATCAATGAAGACTGCTTCACTTCCTGAT 120
Query 121 CTTCCGTATGCTTATGATGCGCTAGAGCCAGCAATCAGTGAGGAGATCATGCGGCTACAC 180
|||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 121 CTTCCGTACGCTTATGATGCGTTAGAGCCAGCGATCAGTGAGGAGATCATGCGGCTACAC 180
Query 181 CATCAGAAACACCACCAGACTTATGTCACTCAGTACAACAAAGCCCTCAACAGCCTTCGT 240
|| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 181 CACCAGAAACACCACCAGACATATGTCACTCAGTACAACAAAGCCCTAAACAGCCTTCGC 240
Query 241 TCTGCCATGGCTGACGGTGATCACTCCTCCGTCGTCAAACTCCAAAGCCTCATCAAGTTC 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTGCCATGGCCGACGGTGATCACTCCTCCGTCGTCAAACTCCAAAGCCTCATCAAGTTC 300
Query 301 AACGGCGGAGGGCACGTTAACCATGCAATCTTCTGGAAAAACCTAGCCCCGGTTCATGAA 360
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 AACGGCGGAGGTCACGTTAACCATGCAATCTTCTGGAAAAACCTAGCCCCTGTTCATGAA 360
Query 361 GGAGGTGGCAAACCACCGCATGATCCTTTGGCTTCGGCGATCGATGCTCATTTCGGATCA 420
||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 361 GGAGGTGGCAAGCCACCGCACGATCCTTTGTCTTCGGCGATCGATGCTCATTTCGCATCA 420
Query 421 CTAGAAGGATTGATCCAAAAAATGAACGCGGAAGGCGCTGCTGTACAGGGATCTGGATGG 480
|||| |||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 421 TTAGAGGGATTGATCCAAAAGATGAACGCGGAAGGCGCTGCCGTGCAGGGATCTGGATGG 480
Query 481 GTGTGGTTTGGATTAGACAGAGAGCTTAAGAGACTTGTCGTTGAAACCACAGCCAACCAG 540
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 481 GTGTGGTTTGGATTAGACAGAGAGCTAAAGAGACTTGTCGTTGAGACCACAGCCAATCAG 540
Query 541 GATCCATTGGTGACTAAGGGATCACACCTAGTTCCTCTAATTGGGATTGACGTGTGGGAG 600
|| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 541 GACCCATTGGTGACGAAGGGATCACACTTAGTTCCTCTAATCGGGATTGACGTGTGGGAG 600
Query 601 CATGCCTACTATCCACAGTACAAGAATGCAAGAGCGGAGTACTTGAAGAACATATGGACT 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 CATGCCTACTATCCACAGTACAAGAATGCTAGAGCGGAGTACTTGAAGAACATATGGACT 660
Query 661 GTAATCAACTGGAAATATGCAGCGGACGTCTTCGAGAAGCACACTCGTGATCTTGATATT 720
|| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 661 GTGATCAACTGGAAATATGCCTCGGACGTATTCGAGAAGCACACTCGTGATCTTGATATT 720
Query 721 AACTGA 726
||||||
Sbjct 721 AACTGA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5