BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56380.1
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898581 jgi|Araly1|898581|Al_scaffold_0005_2547 638 0.0
Ahg483126 jgi|Araly1|483126|fgenesh2_kg.4__2186__AT2G40670.1 418 2e-116
> Ahg898581 jgi|Araly1|898581|Al_scaffold_0005_2547
Length=450
Score = 638 bits (345), Expect = 0.0
Identities = 426/463 (92%), Gaps = 14/463 (3%)
Strand=Plus/Plus
Query 1 ATGAATAAGGGCTGTGGAAGTGGAAGTGATTCTTGTTTATCGTCAATGGAGGAGGAGCTT 60
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAATAACGGATGTGGAAGTGGAAGTGAGTCTTGTTTATCGTCAATGGAGGAGGAGCTT 60
Query 61 CATGTTTTAGCAGTAGATGATAATCTAATTGACCGTAAACTT-GTTGAGAGAATCCTCAA 119
||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 61 CATGTTTTAGCAGTAGATGATAATCTAATTGACCGTAAA-TTCCTTGAAAGAATCCTCAA 119
Query 120 GATCTCTTCTTGCAAAGTGACAACTGCAGAAAACGGGCTTAGAGCTTTAGAATATTTAGG 179
|||||||||||||||||||||||| |||||||| ||||||||||| || || || |||||
Sbjct 120 GATCTCTTCTTGCAAAGTGACAACAGCAGAAAATGGGCTTAGAGCATTGGAGTACTTAGG 179
Query 180 CTTGGGAGATCCACAACAGACTGATTCATTGACTAATGTAATGAAGGTGAATCTCATCAT 239
||||||||||||||||| | || | | |||||||||||||||||||| |||||
Sbjct 180 CTTGGGAGATCCACAAC--A--GA--C-----C-AATGTAATGAAGGTGAATCTTATCAT 227
Query 240 CACTGATTATTGTATGCCAGGAATGACAGGTTTTGAGCTGCTTAAGAAAGTGAAGGAATC 299
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 228 CACTGATTATTGTATGCCAGGAATGACAGGTTTTGAGCTTCTGAAGAAAGTGAAGGAATC 287
Query 300 ATCGAATCTAAAGGAAGTACCTGTTGTGATATTGTCTTCAGAGAACATTCCTACCCGCAT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 288 ATCGAATCTAAAGGAAGTACCTGTTGTGATATTGTCTTCAGAGAACATTCCTACTCGCAT 347
Query 360 CAACAAATGTTTAGCGAGTGGAGCACAGATGTTTATGCAGAAGCCACTGAAACTATCTGA 419
||||||||| ||||| || || |||||||||||||||||||||||||||||| |||||||
Sbjct 348 CAACAAATGCTTAGCTAGCGGTGCACAGATGTTTATGCAGAAGCCACTGAAATTATCTGA 407
Query 420 TGTAGAGAAACTGAAATGCCATCTTTTAAATTGCAGAAGCTGA 462
||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 408 TGTTGAGAAACTGAAATGTCATCTTTTAAACTGCAGAAGCTGA 450
> Ahg483126 jgi|Araly1|483126|fgenesh2_kg.4__2186__AT2G40670.1
Length=571
Score = 418 bits (226), Expect = 2e-116
Identities = 355/416 (85%), Gaps = 14/416 (3%)
Strand=Plus/Plus
Query 55 GAGCTTCATGTTTTAGCAGTAGATGATAATCTAATTGACCGTAAACTTGTTGAGAGAA-T 113
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| |
Sbjct 79 GAGCTTCATGTTTTAGCTGTAGATGATAATCTAATTGACCGTAAACTCGT--AGAGAAGT 136
Query 114 C-CTCAAGATCTCTTCTTGCAAAGTGACAACTGCAGAAAACGGGCTTAGAGCTTTAGAAT 172
||||||||||||||||||||||| ||||| ||||| || | | | ||||| || || |
Sbjct 137 TGCTCAAGATCTCTTCTTGCAAAGTCACAACAGCAGAGAATGCGATAAGAGCATTGGAGT 196
Query 173 ATTTAGGCTTGGGAGATCCACAA-CAG-AC-T-GATTCATTGAC-T--AATGTAATGAAG 225
|||| || |||||||| ||| || ||| | | ||| ||||||| | || || ||||||
Sbjct 197 ATTTGGGTTTGGGAGA-CCAAAATCAGCATATTGATGCATTGACCTGTAACGTTATGAAG 255
Query 226 GTGAATCTCATCATCACTGATTATTGTATGCCAGGAATGACAGGTTTTGAGCTGCTTAAG 285
||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 256 GTGAACCTAATCATCACAGATTACTGTATGCCTGGAATGACAGGTTTTGAGCTGCTCAAG 315
Query 286 AAAGTGAAGGAATCATCGAATCTAA-AGGAAGTACCTGTTGTGATATTGTCTTCAGAGAA 344
||||||||||| ||||| ||||| | || | || |||||||||||| |||||||||||||
Sbjct 316 AAAGTGAAGGAGTCATCAAATCTGAGAG-AGGTTCCTGTTGTGATAATGTCTTCAGAGAA 374
Query 345 CATTCCTACCCGCATCAACAAATGTTTAGCGAGTGGAGCACAGATGTTTATGCAGAAGCC 404
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 375 TATTCCTACTCGCATCAACAAATGTTTAGCGAGTGGAGCTCAAATGTTTATGCAGAAGCC 434
Query 405 ACTGAAACTATCTGATGTAGAGAAACTGAAATGCCATCTTTTAAATTGCAGAAGCT 460
||||||| |||||||| |||||||| || || ||||| | || ||||||||||
Sbjct 435 TTTGAAACTGTCTGATGTTGAGAAACTTAAGTGTCATCTCATGAACTGCAGAAGCT 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16712147982
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5