BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56380.1 Length=462 Score E Sequences producing significant alignments: (Bits) Value Ahg898581 jgi|Araly1|898581|Al_scaffold_0005_2547 638 0.0 Ahg483126 jgi|Araly1|483126|fgenesh2_kg.4__2186__AT2G40670.1 418 2e-116 > Ahg898581 jgi|Araly1|898581|Al_scaffold_0005_2547 Length=450 Score = 638 bits (345), Expect = 0.0 Identities = 426/463 (92%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 1 ATGAATAAGGGCTGTGGAAGTGGAAGTGATTCTTGTTTATCGTCAATGGAGGAGGAGCTT 60 |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGAATAACGGATGTGGAAGTGGAAGTGAGTCTTGTTTATCGTCAATGGAGGAGGAGCTT 60 Query 61 CATGTTTTAGCAGTAGATGATAATCTAATTGACCGTAAACTT-GTTGAGAGAATCCTCAA 119 ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| Sbjct 61 CATGTTTTAGCAGTAGATGATAATCTAATTGACCGTAAA-TTCCTTGAAAGAATCCTCAA 119 Query 120 GATCTCTTCTTGCAAAGTGACAACTGCAGAAAACGGGCTTAGAGCTTTAGAATATTTAGG 179 |||||||||||||||||||||||| |||||||| ||||||||||| || || || ||||| Sbjct 120 GATCTCTTCTTGCAAAGTGACAACAGCAGAAAATGGGCTTAGAGCATTGGAGTACTTAGG 179 Query 180 CTTGGGAGATCCACAACAGACTGATTCATTGACTAATGTAATGAAGGTGAATCTCATCAT 239 ||||||||||||||||| | || | | |||||||||||||||||||| ||||| Sbjct 180 CTTGGGAGATCCACAAC--A--GA--C-----C-AATGTAATGAAGGTGAATCTTATCAT 227 Query 240 CACTGATTATTGTATGCCAGGAATGACAGGTTTTGAGCTGCTTAAGAAAGTGAAGGAATC 299 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 228 CACTGATTATTGTATGCCAGGAATGACAGGTTTTGAGCTTCTGAAGAAAGTGAAGGAATC 287 Query 300 ATCGAATCTAAAGGAAGTACCTGTTGTGATATTGTCTTCAGAGAACATTCCTACCCGCAT 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 288 ATCGAATCTAAAGGAAGTACCTGTTGTGATATTGTCTTCAGAGAACATTCCTACTCGCAT 347 Query 360 CAACAAATGTTTAGCGAGTGGAGCACAGATGTTTATGCAGAAGCCACTGAAACTATCTGA 419 ||||||||| ||||| || || |||||||||||||||||||||||||||||| ||||||| Sbjct 348 CAACAAATGCTTAGCTAGCGGTGCACAGATGTTTATGCAGAAGCCACTGAAATTATCTGA 407 Query 420 TGTAGAGAAACTGAAATGCCATCTTTTAAATTGCAGAAGCTGA 462 ||| |||||||||||||| ||||||||||| |||||||||||| Sbjct 408 TGTTGAGAAACTGAAATGTCATCTTTTAAACTGCAGAAGCTGA 450 > Ahg483126 jgi|Araly1|483126|fgenesh2_kg.4__2186__AT2G40670.1 Length=571 Score = 418 bits (226), Expect = 2e-116 Identities = 355/416 (85%), Gaps = 14/416 (3%) Strand=Plus/Plus Query 55 GAGCTTCATGTTTTAGCAGTAGATGATAATCTAATTGACCGTAAACTTGTTGAGAGAA-T 113 ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| | Sbjct 79 GAGCTTCATGTTTTAGCTGTAGATGATAATCTAATTGACCGTAAACTCGT--AGAGAAGT 136 Query 114 C-CTCAAGATCTCTTCTTGCAAAGTGACAACTGCAGAAAACGGGCTTAGAGCTTTAGAAT 172 ||||||||||||||||||||||| ||||| ||||| || | | | ||||| || || | Sbjct 137 TGCTCAAGATCTCTTCTTGCAAAGTCACAACAGCAGAGAATGCGATAAGAGCATTGGAGT 196 Query 173 ATTTAGGCTTGGGAGATCCACAA-CAG-AC-T-GATTCATTGAC-T--AATGTAATGAAG 225 |||| || |||||||| ||| || ||| | | ||| ||||||| | || || |||||| Sbjct 197 ATTTGGGTTTGGGAGA-CCAAAATCAGCATATTGATGCATTGACCTGTAACGTTATGAAG 255 Query 226 GTGAATCTCATCATCACTGATTATTGTATGCCAGGAATGACAGGTTTTGAGCTGCTTAAG 285 ||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 256 GTGAACCTAATCATCACAGATTACTGTATGCCTGGAATGACAGGTTTTGAGCTGCTCAAG 315 Query 286 AAAGTGAAGGAATCATCGAATCTAA-AGGAAGTACCTGTTGTGATATTGTCTTCAGAGAA 344 ||||||||||| ||||| ||||| | || | || |||||||||||| ||||||||||||| Sbjct 316 AAAGTGAAGGAGTCATCAAATCTGAGAG-AGGTTCCTGTTGTGATAATGTCTTCAGAGAA 374 Query 345 CATTCCTACCCGCATCAACAAATGTTTAGCGAGTGGAGCACAGATGTTTATGCAGAAGCC 404 |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 375 TATTCCTACTCGCATCAACAAATGTTTAGCGAGTGGAGCTCAAATGTTTATGCAGAAGCC 434 Query 405 ACTGAAACTATCTGATGTAGAGAAACTGAAATGCCATCTTTTAAATTGCAGAAGCT 460 ||||||| |||||||| |||||||| || || ||||| | || |||||||||| Sbjct 435 TTTGAAACTGTCTGATGTTGAGAAACTTAAGTGTCATCTCATGAACTGCAGAAGCT 490 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16712147982 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5