BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G56390.1

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg898582 jgi|Araly1|898582|Al_scaffold_0005_2548                    412    6e-115


> Ahg898582 jgi|Araly1|898582|Al_scaffold_0005_2548
Length=807

 Score =  412 bits (223),  Expect = 6e-115
 Identities = 308/346 (89%), Gaps = 17/346 (5%)
 Strand=Plus/Plus

Query  1    ATGGAGGAGATATTAATGTCAATGATATTCAACGGAATCAATCTGGTCAAGGAGCTTGAG  60
            |||||||||  | |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  1    ATGGAGGAG--A-TAATGTCAATGATATTCAACGGAATCAATCTGGTTAAGGAGCTAGAG  57

Query  61   TTCAGTTTATCATCACAAGAGTCACCAGAATCAGATTTGTCGAGTTCTCTAAGCTCGATA  120
            ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct  58   TTCAGCTTATCATCACAAGAGTCACCAGAATCAGATTTGTCGAGTTATCTAAGCTCGATC  117

Query  121  TCCACTCTATTCGGAGACGTCAACGAGCGGCTGAAAACCCTACTAGCGTGGAGGAACTCT  180
            ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct  118  TCCACTCTATTCGGAGACGCCAACGAGCGGCTGAAAATCCTACTTGCGTGGAGGAACTCT  177

Query  181  CTGTCACAGTACCAGCCTGAACCGGAACCGGTTTTAATGTTGGATATGACGAATTGACGA  240
             || |||||||||||||||||||||||||||||  |||||| ||||| ||       |||
Sbjct  178  TTGGCACAGTACCAGCCTGAACCGGAACCGGTTCCAATGTTTGATAT-AC-------CGA  229

Query  241  TGCAGATTGAACCGAGTCTGATGCAGGACCACTGGTT-AA-T---G-TATCCAGTTATGC  294
            |||||| ||| | |||||||||||||||||||||||| || |   | |||||||| ||||
Sbjct  230  TGCAGAATGATCAGAGTCTGATGCAGGACCACTGGTTTAACTTTAGGTATCCAGTGATGC  289

Query  295  AGACAGTGGAGGGTAATGAAACCTCGAGACCAAGGCATCGAAGAAG  340
            ||||||||||||||||||  ||||| ||||||||||||| ||||||
Sbjct  290  AGACAGTGGAGGGTAATGCTACCTCAAGACCAAGGCATCAAAGAAG  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12209788480


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5