BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56390.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value Ahg898582 jgi|Araly1|898582|Al_scaffold_0005_2548 412 6e-115 > Ahg898582 jgi|Araly1|898582|Al_scaffold_0005_2548 Length=807 Score = 412 bits (223), Expect = 6e-115 Identities = 308/346 (89%), Gaps = 17/346 (5%) Strand=Plus/Plus Query 1 ATGGAGGAGATATTAATGTCAATGATATTCAACGGAATCAATCTGGTCAAGGAGCTTGAG 60 ||||||||| | |||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1 ATGGAGGAG--A-TAATGTCAATGATATTCAACGGAATCAATCTGGTTAAGGAGCTAGAG 57 Query 61 TTCAGTTTATCATCACAAGAGTCACCAGAATCAGATTTGTCGAGTTCTCTAAGCTCGATA 120 ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 58 TTCAGCTTATCATCACAAGAGTCACCAGAATCAGATTTGTCGAGTTATCTAAGCTCGATC 117 Query 121 TCCACTCTATTCGGAGACGTCAACGAGCGGCTGAAAACCCTACTAGCGTGGAGGAACTCT 180 ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| Sbjct 118 TCCACTCTATTCGGAGACGCCAACGAGCGGCTGAAAATCCTACTTGCGTGGAGGAACTCT 177 Query 181 CTGTCACAGTACCAGCCTGAACCGGAACCGGTTTTAATGTTGGATATGACGAATTGACGA 240 || ||||||||||||||||||||||||||||| |||||| ||||| || ||| Sbjct 178 TTGGCACAGTACCAGCCTGAACCGGAACCGGTTCCAATGTTTGATAT-AC-------CGA 229 Query 241 TGCAGATTGAACCGAGTCTGATGCAGGACCACTGGTT-AA-T---G-TATCCAGTTATGC 294 |||||| ||| | |||||||||||||||||||||||| || | | |||||||| |||| Sbjct 230 TGCAGAATGATCAGAGTCTGATGCAGGACCACTGGTTTAACTTTAGGTATCCAGTGATGC 289 Query 295 AGACAGTGGAGGGTAATGAAACCTCGAGACCAAGGCATCGAAGAAG 340 |||||||||||||||||| ||||| ||||||||||||| |||||| Sbjct 290 AGACAGTGGAGGGTAATGCTACCTCAAGACCAAGGCATCAAAGAAG 335 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12209788480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5