BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56400.1
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486080 jgi|Araly1|486080|fgenesh2_kg.5__2072__AT3G56400.1 1389 0.0
Ahg901655 jgi|Araly1|901655|Al_scaffold_0004_2305 169 5e-41
Ahg321761 jgi|Araly1|321761|fgenesh1_pm.C_scaffold_4001818 169 5e-41
> Ahg486080 jgi|Araly1|486080|fgenesh2_kg.5__2072__AT3G56400.1
Length=1073
Score = 1389 bits (752), Expect = 0.0
Identities = 896/963 (93%), Gaps = 19/963 (2%)
Strand=Plus/Plus
Query 46 CACCAAAAACTTCCTCAAAACT-AACAAATGGATACTAATAAAGCAAAAAAGCTTAAAGT 104
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 34 CACCAAAAACTTCCTCAAAAATCAACAAATGGATACTAATAAAGCAAAAAAGCTTAAAGT 93
Query 105 TATGAACCAACTCGTTGAAGGCCATGACTTAACAACTCAGCTTCAGCAACTCCTCTCTCA 164
|||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 94 GATGAACCAACTCGTCGAAGGCCACGAGTTAACCACTCAGCTTCAGCAACTCCTCTCTCA 153
Query 165 ACCCGGGTCCGGTC----T--A---GAGGATCTAGTGGCTAAAATCTTAGTGTGTTTCAA 215
|||||||||||||| | | ||||||||||||||||||||||||| || ||||||
Sbjct 154 ACCCGGGTCCGGTCTAGGTCCAGCGGAGGATCTAGTGGCTAAAATCTTAGGGTCTTTCAA 213
Query 216 TAACACCATCTCCGTTCTTGATACCTTCGAACCCATCTCCTCCT-C--CTCATCCCTCGC 272
||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 214 TAACAGCATCTCCATTCTTGATACCTTCGAACCCATCTCCTCCTCCTTCTCATCCCTCGC 273
Query 273 CGCCGTTGAGGGATCTCAAAATGCTTCATGTGATAACGACGGCAAGTTTGAAGATTCCGG 332
||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 274 CGCGGTTGAGGGCTCTCAAAATGCTTCATGCGACAACGACGGCAAGTTTGAAGATTCCGG 333
Query 333 CGATAGTCGGAAAAGATTGGGACCCGTTAAGGGTAAAAGAGGATGCTACAAAAGAAA-AA 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 334 CGATAGTCGGAAAAGATTGGGACCCGTTAAGGGTAAAAGAGGATGCTACAAAAGAAAGAA 393
Query 392 AGAGATCGGAGACGTGTACTATAGAGTCGACTATACTTGAGGACGCATTTTCTTGGAGGA 451
| |||||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 394 A-AGATCGGAGACGTGGACTAAAGAATCGACTATACTTGAGGACGAATTTTCTTGGAGGA 452
Query 452 AATATGGACAAAAGGAGATTCTTAATGCCAAATTCCCAAGAAGTTACTTTAGATGCACAC 511
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 453 AATATGGACAAAAGGAGATTCTTAATGCCAAATTCCCAAGGAGTTACTTTAGATGCACAC 512
Query 512 ACAAGTATACCCAAGGGTGCAAGGCAACAAAGCAAGTCCAGAAGGTTGAGCTCGAACCCA 571
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 513 ACAAGTACACTCAAGGGTGCAAGGCAACAAAGCAAGTCCAGAAGGTGGAGCTCGAACCCA 572
Query 572 AGATGTTCAGTATCACATACATAGGAAACCACACGTGTAACACCAACGCAGAAACTCCCA 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 573 AGATGTTCAGTATCACATACATAGGAAACCACACGTGTAACACCAACGCAGAAACACCCA 632
Query 632 AGAGCAAGACTTGTGACCATCATGATGAGATCTTCATGGATTCCGAAGATCACAAGAGTC 691
||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 633 AGAGCAAGACTTGTGACCATCATGATGAGATCTTCATGGATTCCGAAGAGCATAAGAATC 692
Query 692 CTAGTTT-ATCTACCTCAATGAAGGAAGAAGACA-ATCCTCATCGTCATCATGGTTCGTC 749
||||||| | | |||||||||||||| ||||| | | ||||| |||||||||||||||
Sbjct 693 CTAGTTTGA-CGACCTCAATGAAGGAGGAAGA-AGAGAATCATCATCATCATGGTTCGTC 750
Query 750 CACGGAGAATGACTTGTCATTGGTGTGGCCAGAAATGGTTTTCGAAGAAGATTATCATCA 809
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 751 CACGGAGAATGACTTGTCATTGGTGTGGCCAGATATGATTTTCGAAGAAGATTATCATCA 810
Query 810 TCAGGCCAGTTACGTCAATGGGAAAACGAGTACATCTATCGATGTTTTGGGTTCTCAGGA 869
|||||||| ||||||||||||| |||| |||||||||||| ||| ||||||||||| |||
Sbjct 811 TCAGGCCATTTACGTCAATGGGGAAACTAGTACATCTATCAATGATTTGGGTTCTCCGGA 870
Query 870 TCTCATGGTGTTTGGAGGTGGCGGCGATTTCGAGTTTAGCGAAAATGAGCACTTCTCTAT 929
|| | |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 871 TCACTTGGTGTTTGGAGCTGGCGGCGATTTCGGGTTCAGCGAAAATGAGCACTTCTCTAT 930
Query 930 CTTCAGTTCATGTTCGAATCTATCTTGAGTTTACCACTACTATAGGACTAAGACCATGAG 989
||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 931 CTTCAGTCCATGTTCGAATCTATCTTGAGTTTACCACTACTATAGGACTAAGGCTATGAG 990
Query 990 TTT 992
|||
Sbjct 991 TTT 993
> Ahg901655 jgi|Araly1|901655|Al_scaffold_0004_2305
Length=1014
Score = 169 bits (91), Expect = 5e-41
Identities = 220/280 (79%), Gaps = 17/280 (6%)
Strand=Plus/Plus
Query 324 AGATTCCGGCGATAGT-CG--GAAAAGATTGGGACCCGTTAAGGGTAAAAGAGGATGCTA 380
||||||||| |||||| | ||| ||||| ||| | |||||||||||||||||||||
Sbjct 345 AGATTCCGGTGATAGTAAGAAGAAGAGATTAGGAGTTGGTAAGGGTAAAAGAGGATGCTA 404
Query 381 CAAAAGAAAAAAGAGATCGGAGACGTGTACT-ATAG-AGTCGACTA-TACTTGAGGA-CG 436
|| ||||| |||||||| | || | | | | | || | | | | | ||| || |
Sbjct 405 CACTAGAAAGAAGAGATCACATACAAGGA-TCGTGGAAG-CTAGAAGTTC-TGAAGATAG 461
Query 437 CATTTTCTTGGAGGAAATATGGACAAAAGGAGATTCTTAATGCCAAATTCCCAAGAAGTT 496
|| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 462 -ATATGCTTGGAGGAAATATGGACAAAAGGAGATTCTTAATACCACATTCCCAAGAAGTT 520
Query 497 ACTTTAGATGCACACACAAGT-ATACCCAAGGGTGCAAGGCAACAAAGCAAGTCCAGAAG 555
| |||||||||||||||||| | || ||||| ||||| |||||||||||||| |||||
Sbjct 521 ATTTTAGATGCACACACAAGCCA-ACGCAAGGATGCAAAGCAACAAAGCAAGTACAGAAA 579
Query 556 GTTGAGCTCGAACCCA-AGATGTTC-AGTATCACATACAT 593
|||| || ||| |||||||| | |||||||||||
Sbjct 580 AAGGAGCAAGA-CCCTGAGATGTTCCAA-ATCACATACAT 617
> Ahg321761 jgi|Araly1|321761|fgenesh1_pm.C_scaffold_4001818
Length=1014
Score = 169 bits (91), Expect = 5e-41
Identities = 220/280 (79%), Gaps = 17/280 (6%)
Strand=Plus/Plus
Query 324 AGATTCCGGCGATAGT-CG--GAAAAGATTGGGACCCGTTAAGGGTAAAAGAGGATGCTA 380
||||||||| |||||| | ||| ||||| ||| | |||||||||||||||||||||
Sbjct 345 AGATTCCGGTGATAGTAAGAAGAAGAGATTAGGAGTTGGTAAGGGTAAAAGAGGATGCTA 404
Query 381 CAAAAGAAAAAAGAGATCGGAGACGTGTACT-ATAG-AGTCGACTA-TACTTGAGGA-CG 436
|| ||||| |||||||| | || | | | | | || | | | | | ||| || |
Sbjct 405 CACTAGAAAGAAGAGATCACATACAAGGA-TCGTGGAAG-CTAGAAGTTC-TGAAGATAG 461
Query 437 CATTTTCTTGGAGGAAATATGGACAAAAGGAGATTCTTAATGCCAAATTCCCAAGAAGTT 496
|| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 462 -ATATGCTTGGAGGAAATATGGACAAAAGGAGATTCTTAATACCACATTCCCAAGAAGTT 520
Query 497 ACTTTAGATGCACACACAAGT-ATACCCAAGGGTGCAAGGCAACAAAGCAAGTCCAGAAG 555
| |||||||||||||||||| | || ||||| ||||| |||||||||||||| |||||
Sbjct 521 ATTTTAGATGCACACACAAGCCA-ACGCAAGGATGCAAAGCAACAAAGCAAGTACAGAAA 579
Query 556 GTTGAGCTCGAACCCA-AGATGTTC-AGTATCACATACAT 593
|||| || ||| |||||||| | |||||||||||
Sbjct 580 AAGGAGCAAGA-CCCTGAGATGTTCCAA-ATCACATACAT 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41401487862
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5