BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56410.2
Length=4828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486082 jgi|Araly1|486082|fgenesh2_kg.5__2074__AT3G56410.1 6650 0.0
> Ahg486082 jgi|Araly1|486082|fgenesh2_kg.5__2074__AT3G56410.1
Length=5054
Score = 6650 bits (3601), Expect = 0.0
Identities = 4349/4698 (93%), Gaps = 100/4698 (2%)
Strand=Plus/Plus
Query 185 AGTTGGCAAGTAGTAAAGACTTGAAGCATATGTTCAGAGGTATGAGGAGTAGAACCGTGC 244
||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 402 AGTTGGCAAGTGGTAAAGACTTGAAGCATATGTTCAGAGGCATGAGGAGTAAAACCGTGC 461
Query 245 CCGGATTATCTTCTCAATCTAGAATCGTGAGATGTCCTAAGTGCCACAAACTTCTCCAGG 304
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 462 CTGGATTATCTTCTCAGTCTAGGATCGTGAGATGTCCTAAGTGCCACAAACTTCTCCAGG 521
Query 305 AACCTTTAGATGCTACTTCTTACAAATGTGGTGGATGCGACTCGATTCTTCATGCAAAAC 364
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 522 AACCTTTAGATGCGACTTCTTACAAATGTGGTGGATGCGACTCTATTCTTCATGCAAAAC 581
Query 365 GTTGGGAACCT-GACGGCAATGATCACACAAACACTATTCCTGAGGCTCTCCTTTCTTCT 423
|||||||| || || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 582 GTTGGGAA-CTGGAAGGCAATGATCACACAAACACTATTCCTCAGGCTCTCCTTTCTTCT 640
Query 424 CAAAACCGTAGTTTAAGTGCTGAGGTAGAATCTCCAGAAGATGGTAGTAGAACTCCAATG 483
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CAAAACCGCAGTTTAAGTGCTGAGGTAGAATCTCCAGAAGATGGTAGTAGAACTCCAATG 700
Query 484 AGAACTACTCACCGGGAGTACAATTCAAGGCCATCGACTTCTGTTGAAAGAGGTTATCAT 543
|||| |||||||||||| |||||||||||| ||||| ||||| ||||||| |||||||||
Sbjct 701 AGAAGTACTCACCGGGAATACAATTCAAGGGCATCGCCTTCTATTGAAAGGGGTTATCAT 760
Query 544 CCAGAAACTGTTTACAAGCCTGAGACATCTGATATCCGCAGAGAATGGATGAGAAGGACT 603
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 761 CCAGAAACTGTTTACAAGCATGAGACATCCGATATCCGCAGAGAATGGATGAGAAGGACT 820
Query 604 GATGACTTCAGTGAGACCGGTGATTCTGATGTGTTTACTTCAGAAAGAAGCTCTCCATAT 663
|||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||
Sbjct 821 GATGACTTCAGTGAGACCAGTGATTCTGATGCGTTTGCTTCAGCAAGAAGCTCTCCATAT 880
Query 664 AACACACGCAGCAATG-CTGCGCAATGGGCACAACATGAGGGAAGATACGCAGATCCACC 722
|||||||||||||||| || |||||||||||| ||||||||| ||||| | ||||| |||
Sbjct 881 AACACACGCAGCAATGCCT-CGCAATGGGCACGACATGAGGGGAGATATGAAGATCTACC 939
Query 723 TCGGGTTCCTTTCTATCCAGCAAGTCCTTCCCCTTCTTCTGCATATGAATATGGCTACAG 782
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TCAGGTTCCTTTCTATCCAGCAAGTCCTTCCCCTTCTTCTGCATATGAATATGGCTACAG 999
Query 783 TAGTCCTTTTCACGGGTCTTACGTTTCTGCATCAGAGCAGTCTTATTATCATCAACAACC 842
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1000 TAGTCCTTTTCACGGGTCTCACGTTTCTGCATCAGAGCAGTCTTATTATCATCATCAACC 1059
Query 843 AAACCAATTCGAGCAGTATAGCAGAGAAGGCTGGTTTCAAGAATCTTCTGTTGCTTCACC 902
|||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AAACCAATTCAAGCAGTACGGAAGAGAAGGCTGGTTTCAAGAATCTTCTGTTGCTTCACC 1119
Query 903 TACTCGTTTTCCGGGTGAGACATCTGATGGAAAGTACTATCACAGGTCTTCTCAGTCTCA 962
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TACTCGTTTTCAGGGTGAGACATCTGATGGAAAGTACTATCACAGGTCTTCTCAGTCTCA 1179
Query 963 GCTACATGATCTTCAGTATCATAATCTTTATGAACCAAGTAGATCTGAAACCCCGCATCA 1022
||| ||||||||||||||||||||| |||||||||| ||||| |||| || ||| |||||
Sbjct 1180 GCTGCATGATCTTCAGTATCATAATATTTATGAACCCAGTAGCTCTGTAATCCCACATCA 1239
Query 1023 CTCTGTGTACTCTGAGCGTAGTTATGTACCAGCTGCTGCGCCACACCGCTCTACATACTC 1082
|||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct 1240 CTCTGTGTACTCTGAGCGTAATTATGTAGCAGCTGCAGCGCCACACCGCTCTACATACTC 1299
Query 1083 TGAGCATTCTGTAGGGATTTCTAAGAGTGACACAAGTAGTGAAAAGA--GCATTCTAAGG 1140
|||||||| ||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 1300 GGAGCATTCCGTAGGGATTTCTAAGAGTGACACAAGTAGTGAAAAGATCTCA-T-TAAGG 1357
Query 1141 AACAAAAAACGGTATGTCAGGGAAAGGAATCCGGTAGTGAAGCGCCATATTCTCCCTTCA 1200
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1358 AACAAAAAACGGTATGTCAGGGAAAGGAATCCGGTGGTGAAGCGCCATATTCTTCCTTCA 1417
Query 1201 GCCGGCGGTGCACCTTTTGCAACTTGTTCCTATTGCTTGGAACTTCTACAGCTTCCTCAA 1260
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1418 GCAGGCGGTGCACCTTTTGCAACTTGTTCCTATTGCTTGGAACTTCTACATCTTCCTCAG 1477
Query 1261 GTGTCTCCCCAAGGAAAACGTCAAAGATATCAAGTGAGATGTGGCAGTTGTTCCGGTGTA 1320
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1478 GTGTCTCCCCAAGGAAAACGTAAAAGATATCAAGTGAGATGTGGCAGTTGTTCCGGTGTA 1537
Query 1321 CTTAAGTTCTCTATTCGAGAGAAAGCAGATACTGTCCTGGATTCACCTAGCTTTGTGGAT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 CTTAAGTTCTCTATTCGAGAGAAAGCAGATACTGTCCTGGATTCACCTAGCTTTGTGGAT 1597
Query 1381 TATGGCATGGATTTTGCAGATGAGACTGTTACTAATCACCAGGATTCAGCATCAGAAGGT 1440
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1598 TATGGCATGGATTTTGCAGATGAGAATGTTACTAATCATCAGGATTCAGCATCAGAAGGT 1657
Query 1441 CATGAAGAGATTAATCCTGATGGAAGTCATCTGACGTGTTTAGACGACGATTCTGGAGAA 1500
||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||
Sbjct 1658 TATGAAGAGATTTATCCTGATGGAAATCATCTGCCGTGTTTAGACGACGATTTTGGAGAT 1717
Query 1501 ACAATCTGCAAAAGTAACGATGCTGTTATATTGAGTCAAAAAATTCTAGAAACATTTGAG 1560
|||||||||||||| |||||||||||||| |||||||||| | |||||||||||||||
Sbjct 1718 ACAATCTGCAAAAGCAACGATGCTGTTATTTTGAGTCAAAG--T-CTAGAAACATTTGAG 1774
Query 1561 GATAAAGGGATTAAAGAAGACATAAGGAATATATCCACCAAATTTTTAGATTTGAAATTG 1620
||||| ||||||||||||||||| |||||||||||| |||| | |||||||||||||||
Sbjct 1775 GATAAGGGGATTAAAGAAGACATGAGGAATATATCCGGCAAACTATTAGATTTGAAATTG 1834
Query 1621 GAGGCATTACAGCCTCATCTAAAACCTATGGGGAACCGCAGATTAAGCGAGCAACAACCT 1680
|||||||| |||||||||||||||||| ||| ||||| ||||||||| ||||||||||||
Sbjct 1835 GAGGCATTGCAGCCTCATCTAAAACCTGTGGTGAACCCCAGATTAAGGGAGCAACAACCT 1894
Query 1681 ACATCAAGTGAGACTATTGGAGAGACTTCCAAGATTCATCTAGAGCAATCTCAGGAAGCT 1740
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1895 GCATCAAGTGAGACTATTGGAGAGACTTCCAGGATTCATCTAGAGCAATCTCAGGAAGCT 1954
Query 1741 CATTCAGAAAAGTCAACCGAGATGGATAATAACATTTGTGA-------T------AT--A 1785
|||||||||||||||||||||||||||||||||| |||||| | || |
Sbjct 1955 CATTCAGAAAAGTCAACCGAGATGGATAATAACAATTGTGAAAGAGCCTGGTGCGATTTA 2014
Query 1786 GAAGAGCCTGAATATGAGAAGAACGAAATTATTAAGCCAGAAGAAATTGTAGGAGAAGGA 1845
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2015 GAAGAGCTTGAATATGAGAAGAACGAAATTATTAAGCCAGAAGAAATTGTAGGAGAAGGA 2074
Query 1846 TCAGGTGAGTCCTTGGAAGTTCCAGTAAACCAGAACGAAAGGATGAGTGAATCAAGTGAA 1905
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2075 TCAGGTGAGTCCTTGGAAGTTCCAGTATACCAGAACGAAAGGATGAGTGAATCAAGTGAA 2134
Query 1906 GAAGATGAGAGAGTTGCAGAGAGATCGGTATCTCATAGTGAGGAACTTCTATACAAGAAA 1965
|||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 2135 GAAGATGAGAGAGTTGCAGAGAGATCGGTATCTCATAGTGTGGAAATTCTATACGAGAAC 2194
Query 1966 GAATACGTCAGTGAAACACGTGTACAGTCTGAGAATACCGGAGACACTTACGAGTTTGAA 2025
||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 2195 GAATACGTCAGTGAAACACGTGTACAGTCTGAGAATACCGGAGACGCTAACGAGTCTGAG 2254
Query 2026 TGGGAGGAGACTCAAGAAACTGAAGAATATGAAGGTGAAAGTACATTAGAAGAGATCGGA 2085
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 2255 TGGGAGGAGACTCAAGAAAATGAAGAATATGGAGGTGAAAGTACATTGGAAGAGATCGGA 2314
Query 2086 GACAAACCGCAGTTGCATTTGGATAAATCTAGGTACACTCGAGATTCTATATGTGACAGC 2145
||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||
Sbjct 2315 GACAAACCGCAGTTGCATTTGGAGAAATATAGGTACATTCGAGATTCTATCTGTGACAGC 2374
Query 2146 AGCTTAAGCTATGGTGAACCATTTGAGGATACATCAGTCAAGGAAGATACGGAGCACATA 2205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2375 AGCTTAAGCTATGGTGAACCATTTGAGGATACATCAGTCAAGGAAGATACGGAGCACATA 2434
Query 2206 TCAAACACAATTTCAGATGCGAAGTCAGCTACAACACATTCTCCCTTGAACTCTTTGGTG 2265
||||||||||||||||||| | | | || | || | | ||| | | |
Sbjct 2435 TCAAACACAATTTCAGATG--A--TAA-CT-C------TT-TGG-T-GAA-T----GA-G 2473
Query 2266 AATGAGAATCAGAGGTTTATAGGACATCTTGACCAATCAGGCGAGGCTACAGTAACAATA 2325
||| ||| | | ||||||||||||| |||||||||||| || |||||||||||||||
Sbjct 2474 AATCAGA----G-G-TTTATAGGACATCCTGACCAATCAGGTGAAGCTACAGTAACAATA 2527
Query 2326 TCCAGGATCCAGGAGCACTCCAAGTATGAATATGAGAATTTAAGCGAAAGACAAGAGTTG 2385
|| || ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2528 TCTAGTATCCAGGAGCAGTCCAAGTATGAGTATGAGAATTTAAGCGAAAGACAAGAATTG 2587
Query 2386 GAAATGACCATTAGTGACAGAGTCACGTGTA--AGTTAGAGGAGTCTAGATACGAGACAA 2443
||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||
Sbjct 2588 GAAATGACCATTAGTGACAGAGT-ACG-GTATGAGTTAGAGGAGTTTAGATACGAGACAA 2645
Query 2444 ATGAAACTCTTGAGCCGAGCAAGGTGGGCGAAGATGGATCTCTTGTTTCTTTCGAGAAGG 2503
||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||
Sbjct 2646 ATGAAACTCTTGAGCCGAGCAAGGTGGTCGAAGATGGATCAGTTGTTTCTTTCGCGAAGG 2705
Query 2504 TGAGCGAGGCATTCGAAACAATCATAGAAGGCAAGACAGGTGAAGAGAGACTGGTATCTC 2563
||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2706 CGAGTGAGGCATTCGAAACAATCATAGAAGGCGAGACAGGTGGCGAGAGACTGGTATCTC 2765
Query 2564 ATCAAATGGATTCTCCAAACGAGAATGTAGAAAATTCTTATGGAACATTAGAACCGGTTT 2623
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 2766 ATCAAATGGATTCTCCAAACGAGAAAGTAGAAAATTCTTATGGAACACTAGAACCAGTTT 2825
Query 2624 ATCTAGAAGAAAGCGGGTTTGCAGGTGAAAGA-ACATGGGAAGGGACAATAGAAGATAGA 2682
|||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||
Sbjct 2826 ATCTAGAAGAAAGCGGGTTTGCAGGTGAAA-ATACGTGGGAAGGGACAGTAGAAGATAGA 2884
Query 2683 GCGGGGTTACATTTGGAGGAATATGAAAGCAACTATGAGAATTACAGCAGACCATTTGAA 2742
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2885 GCGGCGTTGCATTTGGAGGAATATGAAAGCAACTATGAGAATTACAGCAGACCATTTGAA 2944
Query 2743 TGGACTTCAGAAACAGCTCCAACATTTCGCATGCATGATTATGAGCTAGGGACAATACTT 2802
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2945 TGGACTTCAGAAACAGCTCCAACATTTGGCATGCATGATTATGAGCTAGGGACAATACTT 3004
Query 2803 GAACCAGACGAGTATGCTGACGGAAGATCAGAATCAAGTTCACGGGGCTCCTTCAATGAC 2862
|||||||||||| ||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 3005 GAACCAGACGAGGATGCTGATGGAAGATCAGAATCCAGTTCACGGGGTTCCTTCAATGAT 3064
Query 2863 GATGGAGGTTCAGAAGAGAGGGTCGTTTTTCATGAGTCTCAAGTTGCTATACCTGAGCAG 2922
|||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||
Sbjct 3065 GATGGAAGTTCAGAAGAGAGGGTCATTTTTCATGAGTCTCAAGATGCTATACCCGAGCAG 3124
Query 2923 TCCCACTATGAGTATGAGAACTCAAGCAAAAGACAAGAGTTGAGTGACACCGTTTTTGAC 2982
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3125 TCCCACGATGAGTATGAGAGCTCAAGCAAAAGACAAGAGTTGAGTGACACCGTTTTTGAC 3184
Query 2983 ATAGCAAGGTCTGAATTACAAGAGTATAGATATGAGAGAAATGAAACACTTGAGCCAAGT 3042
|||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 3185 ATAGTAAGGTCTGAATTACAGGAGTATAGATATGAGACCAATGAAACACTTGAGCCAAGC 3244
Query 3043 AAGATGGTTGGAGATGGATCTGTTGTTCCTGTTGAGAAGGCGGGTGAAACTTTCATAAGC 3102
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3245 AAGATGGTTGGAGATGAATCTGTTGTTCCTGTTGAGAAGGCGGGTGAAACTTTCATAAGC 3304
Query 3103 AAAAAGAATGAAGACAGCTCGGTATCTCATCAAATGGAGTCTCAAAATGAAGATATGGAA 3162
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3305 GAAAAGGATGAAGAGAGCTCGGTATCTCATCAAATGGAGTCTCAAAATGAAGATATGGAA 3364
Query 3163 AATTCCTACGGAACAAAAGAACCGGTTTATCCGGAAGGAAGCAGATGTGAAAGTGAAAAT 3222
|||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3365 AATTCCTACGGAACTATAGAACCGGTTTATCTGGAAGGAAGCAGATGTGAAAGTGAAAAT 3424
Query 3223 TCATGGGCAGAGACAATGGGAGATGGAGCGGGGTTGAAGTTAGAGGAATATAATAGCAAT 3282
|||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 3425 CCATGGGCAGAAACAATGGGAGATGAAGTGGGGTTGAAGTTAGAGGAATATAAAAGCAAT 3484
Query 3283 CCATTTGAATGGACTTCTGAAAAAGCTGCAGCATTTCATCTGCATGAGTATGAACGATGG 3342
||||||||||||||||| ||| |||| ||||||| ||||||||||||||||||| ||||
Sbjct 3485 CCATTTGAATGGACTTCCGAACGAGCTCCAGCATTCCATCTGCATGAGTATGAACAATGG 3544
Query 3343 ACAGTGCCTGAACCAGAAGAGGATGCTAATGAAAGATCAATAACCAGTTCACGGGATTCC 3402
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 3545 ACAGTGCCTGAACCAGAAGAGGATGCTAATGGAAGATCAATACCCAGTTCACGGGATTCC 3604
Query 3403 TTTAATGACCATGAAAATTTAAAAGGGATAGCTGTGTCTCATGAGGAGGAGCCCTGGCTA 3462
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 3605 TTTAATGACCATGAAAGTTTAAAAGAGATAGTTGTGTCTCATGAGGAGGAGCCCTGGCTA 3664
Query 3463 GTGGATGAGAACAGAA-CGGAAGCTCTAAAAGTTGGTGTAATGGTGGAAGATGAACCATC 3521
|||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 3665 GTGGATGAGAAC-GAAACGGAAGCACTAAAAGTTGGTGTAATGGTGGAAGATGGACCTTC 3723
Query 3522 GCTGCACCTGACGAAATTTGAAAACGAAACAATGAAATTGGAAGAGACACTTGAATGGAC 3581
||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 3724 GCTGCACCTGACGAAATGCGAAAATGAATCAATGAAATTGGAAGAGACACTTGAATGGAC 3783
Query 3582 TTCAGAAAGAGCTCCAACATTTCGTCTACCTGAGTATGAGCTAGGGGAAATGCTTGAATC 3641
||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 3784 TTCAGAAAGAGCTCCAACATTTCGTCTGCATGAGTATGAACTAGGGGAAATGCTTGAATC 3843
Query 3642 AGACAACGACGTTGATGAAAGATCAGAATATAGTTCAAAGGGTTCCTTCAATGATCATG- 3700
||||||||| ||||||||||||||||| || ||||||| ||||||||||||||| ||||
Sbjct 3844 AGACAACGATGTTGATGAAAGATCAGATTACAGTTCAAGGGGTTCCTTCAATGACCATGG 3903
Query 3701 AAATTCCAA-GA--GAG--TTGTTAAATGAGGAGGATCCCCAGCTGGTGATTGATGGCAG 3755
|||||| || || ||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 3904 AAATTCAAAAGAAAGAGAGTTGTTCAATGAGGAGGAGCCCCAGCTGGTGATTGACGGCAG 3963
Query 3756 AACCGAAGCTG-TACAAGTAGGCGAAATGGCAAAAGATACAGTATCACTGCACTTGGAGG 3814
||||||||| | |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 3964 AACCGAAGC-GCTACAAGTAGGCGAAGTGGCAAAAGATACGGTATCACTGCACTTGGAGG 4022
Query 3815 AATGCGGAAATGAATCAATGAAACTGGATGAGACATTTGAATGGACGTCAGGGAGAACTT 3874
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 4023 AATGCGGAGATGAATCAATGAAACTGGATGAGACATTTGAATGGACTTCAGGGAGAACTT 4082
Query 3875 TAACGTTTCGTCGCCATGGGTATGAGGTAGAGACAAAGCTTGAAGCAGACGAGGATGCTG 3934
||||||||||||||||| |||||||||||| ||||||||||| | |||| ||||||||||
Sbjct 4083 TAACGTTTCGTCGCCATCGGTATGAGGTAGGGACAAAGCTTGCACCAGATGAGGATGCTG 4142
Query 3935 ATGGAAGATCAGAATCTAGTTCAAGGGGTTCCTTCAATGATCGTGGAAGTTCAAAAGAGA 3994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4143 ATGGAAGATCAGAATCTAGTTCAAGGGGTTCCTTCAATGATCGTGGAAGTTCAAAAGAGA 4202
Query 3995 GAGCTGTACTTCACGAGGATGGGTCTTGGCTGGTGGATGATTATGAAACCAAAGCGCTAA 4054
||||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||||
Sbjct 4203 GAGCTGTACTTCACGAGGATGGGCCTTGGCTGGTGGATGATTATGAAAACAACGCACTAA 4262
Query 4055 AAGTAGGCGTAATGGCAGAAGATGGATCATCGCTGCAGTTGGAGAAAG-GCGAAAATGGA 4113
|||||||||||||||||||||||||||| |||||| || ||||| | || |||||| |
Sbjct 4263 AAGTAGGCGTAATGGCAGAAGATGGATC---GCTGCACTTAGAGAA-GTGCAAAAATGAA 4318
Query 4114 AAAATGGATTTGGACGAGACACTTGAACCAAGGGATGATATATTCAGGCTCAGTCTTGAT 4173
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 4319 AAAATGGAATTGGACGAGACACTTGAACAAAGGGATGATATATTCAGGCTCAGTCTTGAT 4378
Query 4174 GACACACTTGAGCAAGAAAGGATGACGTTTCATTTAAAGATGTCTCAAGATAAGCAAGAA 4233
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4379 GACACACTTGAGCAAGATAGGATGACGTTTCATTTAAAGATGTCTCAAGATAAGCAAGAA 4438
Query 4234 AGTCTAAGGCAGACCTTTAAACAAGGTGATGCTGAAAAAGAT-T-C-AG-AC--G-T--A 4284
| ||||||||||||||||||||||||||| |||| ||||||| | | || | | | |
Sbjct 4439 AATCTAAGGCAGACCTTTAAACAAGGTGAGGCTGGAAAAGATATACCAGCATTTGGTTCA 4498
Query 4285 ----T-T-TTCAGAAGGCCATGAATTTCCAAGTAAAATGGCAGAACTAGATAGTGACACT 4338
| | |||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 4499 ACAGTATCTTCAGAGGGCCATGAATCTCCAAGTAAAATGGCAGAACTAGATAGTGACACT 4558
Query 4339 GAAGAGGAGATAGTGGAAGAACAATTAGAACATTTGCAGAAAGAGAATGAGAAGTTAAGT 4398
|||||||||||| ||||||| || ||||||||||||||| ||||||||| ||||| | ||
Sbjct 4559 GAAGAGGAGATATTGGAAGACCACTTAGAACATTTGCAGGAAGAGAATGGGAAGTCAGGT 4618
Query 4399 CTAACCTTTGAACAACATGATCACATCTACAGCACAACGGAGCCTTCTGAAATTGTGGGT 4458
||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct 4619 CTAACCTTTGAACCACATGCTCATATCTACAACACAACGGAGCCTTCTGAAATTGTGGGT 4678
Query 4459 TTGCGTCATGCGTTATACCAAACGCAAAATTCACCTCTACGATCACCTCTCACTTCACCA 4518
||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 4679 TTGCGTCATGCGTTATATCAAACACAAAATTCACCTCTACGATCGCCTCTCACATCACCA 4738
Query 4519 ATTCATACTCCCATTGGTTCTCCGCTGCATTACCTGATGGCTTCACAAATACGTTCTCCA 4578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4739 ATTCATACTCCCATTGGTTCTCCGCTGCATTACCTGATGGCTTCACAAATACGTTCTCCA 4798
Query 4579 ATAGCTTCAACAATGCATAGTCACATAGTTTCACCGCTTCGTTCTCCCATCAACTCCTCT 4638
||||||||| |||||||| |||||||||||||| || ||||||||||||||||| |||
Sbjct 4799 ATAGCTTCACCAATGCATTCCCACATAGTTTCACCACTGCGTTCTCCCATCAACTCATCT 4858
Query 4639 GGATCACTCTCTGATGTATTGTTCTTCAGCAAGAAAACTTGATGGCACGAAAACAGATAA 4698
||||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||||
Sbjct 4859 GGATCACTCTCTGATGTATTGCTCTTCAGCAAGAAAACTTGATGACAAGAAAACATATAA 4918
Query 4699 GCATTGTTCCAAGCTTTCCCCACATACTTGAAGACTTTACCTGCGATACAAAAACAGTGT 4758
| || |||||||||||| | |||| || |||||||||||||| |||||||| ||||||
Sbjct 4919 GTATCCCTCCAAGCTTTCCGC-CATAGTTCAAGACTTTACCTGCAATACAAAA-CAGTGT 4976
Query 4759 GTACATTGTTTCAATTTTGTTTTTGAGTG-----ATT----GTAAGGTTTTCTACAGATA 4809
|||||||| ||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 4977 ATACATTGTCTCAATTTTGTTTTCGAGTGGCTGGATTACATGTAAGGTTTTCTACAGATA 5036
Query 4810 ATAAATCAATTCATTGAG 4827
||||||||||||||||||
Sbjct 5037 ATAAATCAATTCATTGAG 5054
Score = 187 bits (101), Expect = 6e-46
Identities = 113/119 (95%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 68 AAACCATGATGAAGAAGAAGAAACAGAGCAGATCCCAGTCTTCTTCTACCAAGAAAACTT 127
||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 181 AAATCATGATGAAGAAGAAGACACAGAGCAGATCCCAATCTTCTTCTACCAAGAAAAGTC 240
Query 128 TTGAACCATCCTCAGATTCTTCACCTTCACCTAGGCTCCTCTCCATTATCCGTTCTAAG 186
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TTGAACCATCCTCAGATTCTTCACCTTCACCTAGGCTACTCTCCATTATCCGTTCTAAG 299
Score = 135 bits (73), Expect = 2e-30
Identities = 130/156 (83%), Gaps = 9/156 (6%)
Strand=Plus/Plus
Query 3845 AGA-CATTTGAATGGACGTCAGGGAGAACTTTAACGTTTCGTC--GCCATGGGTATGAGG 3901
||| ||||||||||||| |||| | | || ||| ||| | | | |||| ||||||
Sbjct 2933 AGACCATTTGAATGGACTTCAGAAACAGCTCCAACATTT-GGCATG-CATGATTATGAGC 2990
Query 3902 TAGAGACAA-AGCTTGAAGCAGACGAGGATGCTGATGGAAGATCAGAATCTAGTTCAAGG 3960
||| ||||| | |||||| ||||||||||||||||||||||||||||||| |||||| ||
Sbjct 2991 TAGGGACAATA-CTTGAACCAGACGAGGATGCTGATGGAAGATCAGAATCCAGTTCACGG 3049
Query 3961 GGTTCCTTCAATGATCG-TGGAAGTTCAAAAGAGAG 3995
||||||||||||||| | |||||||||| |||||||
Sbjct 3050 GGTTCCTTCAATGAT-GATGGAAGTTCAGAAGAGAG 3084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 182714407973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5