BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G56420.1

Length=650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938597 jgi|Araly1|938597|scaffold_502788.1                        436    7e-122


> Ahg938597 jgi|Araly1|938597|scaffold_502788.1
Length=389

 Score =  436 bits (236),  Expect = 7e-122
 Identities = 250/257 (97%), Gaps = 0/257 (0%)
 Strand=Plus/Plus

Query  394  GCGCGCCATGGTGTGTACCTTGTAAAAAGATAGAACCAGTATTCAGGGACCTTGCTTCTA  453
            ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  113  GCGCGCCGTGGTGTGTACCTTGTAAAAAGATAGAACCAGTATTCAGGGAGCTTGCTTCTA  172

Query  454  GATACCCTTCAATGATATTTGTAACGGTTGATGTCGAAGAGCTCGCTGAGTTTAGTAATG  513
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  173  GATACCCTTCAATGATATTTGTAACTGTTGATGTCGAAGAGCTCGCTGAGTTTAGTAATG  232

Query  514  AATGGAATGTGGAAGCTACACCAACTGTAGTGTTCCTTAAAGATGGGAGACAAATGGATA  573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  233  AATGGAATGTGGAAGCTACACCAACTGTAGTGTTCCTTAAAGATGGGAGACAAATGGATA  292

Query  574  AACTTGTTGGTGCTGAAACCTCAGAGCTTCAGAAGAAGACAGCTGCAGCTGCTGATCTCT  633
            |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct  293  AACTTGTTGGTGCTGAAACCTCAGAGCTGCAAAAGAAGACAGCTGCAGCTGCTGATCTCT  352

Query  634  TTCTCAGAAAACCTTAA  650
            |||||| |||||| |||
Sbjct  353  TTCTCAAAAAACCATAA  369


 Score =  100 bits (54),  Expect = 1e-20
 Identities = 81/92 (88%), Gaps = 9/92 (10%)
 Strand=Plus/Plus

Query  226  TATGGTCATGTATATGCTGCTGCAGcaacaacaacaacaacaGTTATGGTCAAACCCGAA  285
            ||||| |||||||||||||||||||   |||||||||| | ||    | |||||||||||
Sbjct  31   TATGGCCATGTATATGCTGCTGCAG---CAACAACAAC-A-AG----GCTCAAACCCGAA  81

Query  286  GCCAACACGGGTCCAAAGGAAAGGTCCATCCG  317
            ||||||||||||||||||||||||||||||||
Sbjct  82   GCCAACACGGGTCCAAAGGAAAGGTCCATCCG  113



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23826823125


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5