BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56430.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938598 jgi|Araly1|938598|scaffold_502789.1 2198 0.0
> Ahg938598 jgi|Araly1|938598|scaffold_502789.1
Length=1360
Score = 2198 bits (1190), Expect = 0.0
Identities = 1305/1361 (96%), Gaps = 5/1361 (0%)
Strand=Plus/Plus
Query 92 TTCGATCTAAAACCCTAAAAAGATGGTGAAACCTTCCGATTTCAAAGCAGTTCACAAACT 151
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1 TTCGATCTAAAACCCTAAAAAGATGGTGAAACCCTCTGATTTCAAAGCAGTGCACAAACT 60
Query 152 TATTCAATTGCATTACAGTCGAGTCAACCTGTTCACAACGACGGGATGGTCAAAACTCTC 211
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 61 TATTCAATTGCATTACAGTCGAGTCAACCTGGTCACAACGACGGGCCGGTCAAAACTCTC 120
Query 212 AGCTTTGTCTTCTCCGGCTCTTCCTTCAAATGGGGTTTCTCAGCTTCAGCCTAAGTCTGG 271
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 121 CGCTTTGTCTTCTCCGACTCTTCCTTCAAATGGGGTTTCTCAGCTTCAGGCTAAGTCCGG 180
Query 272 TTTCCACACCTTCTCGTCGAGACCCACTTCGAAAAACTTTGGCTTATCCCAGATTCTTCC 331
|||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 181 TTTCCACAGCTTTTCGTCGAGACCCACTGCGAAAAACTTTGGCTTGTCCCAGATTCTTCC 240
Query 332 CTCTAATGGGGTTTCTCAGCTTCAACCTAAGACCAGTTTCCACAGCTTTTTGTCGAGACC 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CTCTAATGGGGTTTCTCAGCTTCAACCTAAGACCAGTTTCCACAGCTTTTTGTCAAGACC 300
Query 392 CACTTCGAAAAATGTGGGATTATCCCAGATTTTACCC---AGTCCTAAGCTCGTACCTGG 448
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 301 CACTTCGAAAAATGTGGGATTATCCCAGATTCTACCCAGTAGTCCTAAGCTCGTACCTAG 360
Query 449 TTTGCAGAATTGTGGTGTAGCCTTGGTTAAGCCCCGTGTTAATATGAACTTTGTATCGGC 508
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct 361 TTTGCAGAATTGTGGTGTAGCGTTGGTTAAGCCCCGTGTTAATGTGAACTTTGCATCGGC 420
Query 509 GTTTAGATTGTTTTCGAGCTCTGGATTTCGAAAAGTTGATGGGAATTTCGCTAGAAAGGT 568
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 421 TTTTAGATTGTTTTCGAGCTCTGGGTTTCGAAAAGTCGATGGGAATTTCGCTAGAAAGGT 480
Query 569 TGTTGACAAGCCAATCAAAGCTGTTAGTTCGACTTTTGCTAGATACCGAATGGCTTTAGG 628
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTTGACAAGCCAATCCAAGCTGTTAGTTCGACTTTTGCTAGATACCGAATGGCTTTAGG 540
Query 629 GTTGCACGTTGATGCATTTTGGAAGAAGAATAACCTTTTGGTGTTTGGAGCAGGAGCTGT 688
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTGCACATTGATGCGTTTTGGAAGAAGAATAACCTTTTGGTGTTTGGAGCAGGAGCTGT 600
Query 689 TTTTGTTTGTATTTTCTTGTGGAGGGTCATGTTTGGAATCGCTAGTACATTCGTTGGCCT 748
|||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||
Sbjct 601 TTTTGTATGTATTTTCTTGTGGAGGATCATGTTTGGAATTGCTAGCACATTCGTTGGTCT 660
Query 749 CTCTGAGGGAATGGCCAAGTATGGCTTCCTTGCTCTCTCATCTGCCATTGTTGCATTTGC 808
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTCTGAGGGAATGGCCAAGTACGGCTTCCTTGCTCTCTCATCTGCCATTGTTGCATTTGC 720
Query 809 TGGTTTATACCTTCGCGCAAGGTTCACGATCAATCCCGATAAAGTTTACAGGATCACTAT 868
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 721 TGGTTTATACCTTCGCGCAAGGTTCACGATAAATCCCGATAAAGTCTATAGGATCACTAT 780
Query 869 GAGGAAGCTCAATACAGCGGCTGATGTTCTTGAAGTTATGGGTGCTCCTCTAGCAGGATC 928
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 781 GAGGAAGCTCAATACAGCGGCTGATGTTCTTGAAGTTATGGGTGCTCCTCTGGCAGGATC 840
Query 929 AGATTTGCGTGCTTATGTGATGTCAGGTGGTGGAATAACATTCAAAAAATTCAAGCCAAC 988
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 841 AGATTTGCGTGCTTATGTGATGTCAGGTGGTGGCATAACATTCAAAAAATTCAAGCCAAC 900
Query 989 AATTAGGAACAAGCGTTGCTTCCTCCTATTCCCGGTTCAAGGTTCTGAGCGAAAGGGACT 1048
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 901 AATTAGGAACAAGCGTTGCTTCCTCCTATTCCCGGTTCAAGGTTCCGAGAGAAAGGGCCT 960
Query 1049 TGTTAGTGTCGAAGTCAAGAAGAAGAAAGGCCAGTATGATATGAAACTACTGGCGGTGGA 1108
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 TGTTAGTGTCGAAGTCAAGAAGAAGAAAGGCCAGTATGATATGAAACTACTGGCAGTGGA 1020
Query 1109 TATTCCGATGGCGTCTGGTCCTGATCAACGCTTATTCCTTATTGGTGATGAAGAAGAGTA 1168
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TATTCCAATGGCGTCTGGTCCTGATCAACGCTTATTCCTTATTGGTGATGAAGAAGAGTA 1080
Query 1169 CAGAGTCGGTGGTGGTTTGATCTCTGAGTTAAGAGATCCTGTGGTAAAAGCAATGGCAGC 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CAGAGTCGGTGGTGGTTTGATCTCTGAGTTAAGAGATCCTGTGGTAAAAGCAATGGCAGC 1140
Query 1229 AACCAAAGAGTTTGATAATCTTGACagaattgaagaggaagaagacgccgaaagagaact 1288
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AACCAAAGAATTTGATAATCTTGACAGAATTGAAGAGGAAGAAGACGCCGAAAGAGAACT 1200
Query 1289 tcaagaagccgaaaggaaggaacgtgaagagaTTGAACTTCAAGAAGCCGAAAGGAAGGA 1348
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1201 TCAAGAAGCCGAAAGGAAGGAACGTGAAGAAATTGAACTTCAAGAAGCCGAAAGGAAAGA 1260
Query 1349 ACGTGAAGAA-TTCGAACTTCAAGAAGCAGAAAGAAAGCAGCGTGAAGAAATCGAGAAGC 1407
|||||||||| || |||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 1261 ACGTGAAGAAATT-GAACTTCAAGAAGCGGAAAGAAAACAGCGTGAAGAAATTGAGAAGC 1319
Query 1408 TTGAAAAATAGAGTTCTTAGTCGGTTCTATCGTACTTGCAC 1448
| | |||| ||||||||||||||||||||||||||||||||
Sbjct 1320 TCGGAAAAGAGAGTTCTTAGTCGGTTCTATCGTACTTGCAC 1360
Score = 110 bits (59), Expect = 4e-23
Identities = 73/79 (92%), Gaps = 4/79 (5%)
Strand=Plus/Plus
Query 1323 GAACTTCAAGAAGCCGAAAGGAAGGAACGTGAAGAA-TTCGAACTTCAAGAAGCAGAAAG 1381
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1196 GAACTTCAAGAAGCCGAAAGGAAGGAACGTGAAGAAATT-GAACTTCAAGAAGCCGAAAG 1254
Query 1382 -AAAGCAGCGTGAAGAAAT 1399
|||| | |||||||||||
Sbjct 1255 GAAAGAA-CGTGAAGAAAT 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5